Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZWL	60532	2025-01-13	2024-06-13	3.4	3.16	3.10	3.5	0.008	0.92	0.0	0.06	11.35	0.00	2.273	8.06	0.00	5.4	94.6	0.0	-4.31	0.30	0.81	4.89	3.4	0.004	0.65	0.0	0.05	13.63	0.00	2.614	4.24	1.26	2.0	98.0	0.0	-2.95	0.51	0.33	0.85	4.78	3468	456	6	0	0	0	0	logfile
✔	8ZWM	60533	2025-01-13	2024-06-13	3.2	3.28	2.96	3.3	0.005	0.67	0.0	0.05	11.92	0.00	2.167	4.43	0.00	2.3	97.7	0.0	-3.69	0.35	0.90	6.45	3.3	0.003	0.54	0.0	0.05	14.68	0.00	2.613	2.72	0.76	2.5	97.5	0.0	-2.22	1.26	0.33	0.90	5.89	3435	453	6	0	0	0	0	logfile
✔	8ZWJ	60529	2025-01-13	2024-06-13	3.1	2.80	2.17	3.2	0.006	0.74	0.0	0.05	15.84	0.00	2.218	14.51	0.00	10.1	89.9	0.0	-4.10	0.44	0.86	4.88	3.2	0.003	0.52	0.0	0.05	15.83	0.00	2.573	3.76	3.33	8.7	91.3	0.0	-2.16	1.27	0.42	0.86	4.43	2760	378	8	6	0	0	0	logfile
✔	8ZWK	60530	2025-01-13	2024-06-13	3.4	2.76	2.79	3.4	0.003	0.60	0.0	0.05	16.32	0.00	2.253	13.62	0.00	8.2	91.8	0.0	-5.39	0.34	0.79	3.91	3.4	0.003	0.57	0.0	0.05	16.54	0.00	2.606	5.91	5.19	8.2	91.8	0.0	-3.46	1.50	0.36	0.82	4.46	2760	378	8	6	0	0	0	logfile
✔	9C88	45300	2025-01-24	2024-06-12	2.6	3.12	2.61	2.9	0.002	0.50	0.0	0.04	9.78	0.02	1.909	3.07	0.03	2.4	97.6	0.0	0.74	0.78	0.81	3.79	2.9	0.002	0.52	0.0	0.04	14.01	0.00	1.888	4.10	0.38	2.7	97.3	0.0	1.21	1.33	0.79	0.82	3.26	73908	4723	27	0	20	0	37082	logfile
✔	8ZW8	60519	2025-01-18	2024-06-12	3.05	3.27	3.06	3.3	0.003	0.60	0.0	0.04	16.41	0.00	2.140	9.12	0.65	3.8	96.2	0.0	1.59	0.63	0.82	1.79	3.3	0.005	0.61	0.0	0.04	16.60	0.00	2.550	7.16	3.33	4.1	95.9	0.0	1.70	0.24	0.64	0.83	2.27	11652	1491	3	0	0	0	0	logfile
✔	9FoR	50628	2025-01-13	2024-06-12	2.75	2.54	2.63	2.8	0.012	2.11	5.0	0.10	12.86	0.01	2.496	1.38	3.17	7.4	91.5	1.1	-5.01	0.49	0.92	7.55	2.7	0.004	0.90	0.0	0.04	16.08	0.01	2.626	0.92	1.59	7.2	92.8	0.0	-5.35	0.40	0.53	0.91	6.30	3405	490	10	0	0	0	0	logfile
✔	9C87	45299	2025-01-25	2024-06-12	3.7	4.25	3.77	4.0	0.004	0.70	1.0	0.04	12.08	0.00	2.039	3.80	0.00	0.1	99.9	0.0	-1.93	0.84	0.76	1.30	3.9	0.004	0.60	1.0	0.04	14.62	0.00	1.757	6.88	0.89	4.4	95.6	0.0	-0.04	0.85	0.85	0.77	1.41	77104	4927	28	0	11	0	38668	logfile
✔	9C86	45298	2025-01-19	2024-06-12	2.9	3.44	3.01	3.3	0.004	0.59	0.0	0.04	16.83	0.00	1.947	43.20	4.30	4.8	95.2	0.1	0.38	0.64	0.73	2.64	3.3	0.004	0.57	0.0	0.04	16.94	0.00	1.413	42.06	4.44	6.6	93.4	0.0	0.03	0.24	0.61	0.71	2.51	14540	1942	5	0	0	0	44	logfile
✔	9C8R	45308	2025-01-18	2024-06-12	2.83	3.00	2.86	3.0	0.003	0.55	0.0	0.04	15.12	0.00	2.220	3.55	0.95	2.4	97.6	0.0	-0.07	0.70	0.90	4.57	3.0	0.002	0.49	0.0	0.04	15.65	0.00	2.433	2.55	1.26	2.0	98.0	0.0	0.32	0.74	0.73	0.91	4.25	12220	1544	3	0	0	0	0	logfile
✔	9FoF	50621	2025-01-13	2024-06-11	2.9	2.55	2.80	3.2	0.011	1.53	6.0	0.08	13.93	0.01	2.332	9.79	1.56	4.2	94.8	1.0	-4.04	0.27	0.57	3.42	2.8	0.006	0.98	0.0	0.05	17.69	0.00	2.593	1.76	1.56	7.8	92.2	0.0	-4.69	1.98	0.51	0.89	5.50	4176	600	12	0	0	0	0	logfile
✔	9C7U	45294	2025-01-14	2024-06-11	3.65	4.10	3.63	4.0	0.003	0.61	0.0	0.04	16.99	0.00	2.138	11.43	0.29	9.2	90.8	0.0	-0.72	0.71	0.83	2.04	4.0	0.004	0.62	0.0	0.04	17.57	0.00	2.540	10.83	5.96	9.4	90.6	0.0	-0.65	0.31	0.69	0.83	2.00	6848	896	4	0	1	0	0	logfile
✔	9FNB	50587	2025-01-13	2024-06-10	2.64	2.64	2.37	2.6	0.008	1.34	0.0	0.16	15.19	0.01	2.042	3.52	0.79	6.8	93.2	0.0	-2.48	0.52	0.93	6.97	2.6	0.005	0.69	0.0	0.05	15.91	0.00	2.514	6.26	0.79	6.6	93.4	0.0	-2.37	0.87	0.50	0.92	6.33	4568	540	8	0	16	0	0	logfile
✔	9C6Q	45254	2025-01-16	2024-06-08	3.18	3.22	3.07	3.3	0.005	0.64	0.0	0.04	15.43	0.00	2.139	5.91	0.19	6.6	93.4	0.1	-0.07	0.59	0.70	0.92	3.3	0.002	0.53	0.0	0.04	17.11	0.00	2.519	2.82	1.14	6.6	93.4	0.0	0.40	0.66	0.66	0.80	2.09	9841	1190	2	12	0	0	0	logfile
✔	9FMV	50571	2025-01-17	2024-06-07	3.43	2.30	3.33	2.1	0.004	0.65	0.0	0.04	15.23	0.01	2.203	9.66	0.55	3.2	96.8	0.0	1.60	0.75	0.72	1.40	2.1	0.004	0.65	0.0	0.04	16.10	0.01	2.459	7.49	2.12	2.9	97.1	0.0	1.95	0.35	0.75	0.74	1.71	10272	1254	5	0	0	0	0	logfile
✔	9FMU	50570	2025-01-20	2024-06-07	4.46	4.84	4.61	4.6	0.005	1.18	4.0	0.07	13.08	0.01	1.959	20.15	0.00	4.3	95.4	0.3	-1.25	0.80	0.73	—	4.6	0.004	0.75	0.0	0.04	13.59	0.00	1.451	14.76	0.00	5.1	94.9	0.0	-0.23	1.69	0.82	0.79	—	14763	1919	10	0	10	0	0	logfile
✔	9FMS	50566	2025-01-22	2024-06-07	2.65	3.44	2.78	3.2	0.012	1.83	3.0	0.10	14.00	0.02	1.881	0.67	0.20	4.2	95.8	0.0	-1.29	0.75	0.71	4.44	3.2	0.003	0.61	0.0	0.04	15.79	0.00	2.230	2.75	0.61	2.6	97.4	0.0	1.01	2.18	0.75	0.76	3.67	17805	1102	4	0	1	0	8842	logfile
✔	8ZTR	60470	2025-01-19	2024-06-07	3.26	3.32	3.25	3.3	0.005	0.81	1.0	0.04	17.60	0.00	2.195	7.58	0.45	4.8	95.2	0.1	-0.75	0.61	0.59	1.19	3.3	0.003	0.65	0.0	0.04	18.43	0.00	2.442	10.32	3.43	4.4	95.6	0.0	-0.23	1.13	0.62	0.61	0.74	14072	1694	4	0	0	0	0	logfile
✔	9C6i	45247	2025-01-15	2024-06-07	2.56	3.19	2.65	2.9	0.008	0.68	0.0	0.04	25.62	0.01	1.892	11.33	0.00	0.0	0.0	0.0	—	0.92	0.89	—	2.9	0.010	0.74	0.0	0.05	25.15	0.01	1.844	9.20	0.00	0.0	0.0	0.0	—	1.28	0.93	0.93	—	8471	0	2	393	21	0	0	logfile
✔	9C6J	45248	2025-01-15	2024-06-07	2.41	3.08	2.55	2.9	0.008	0.79	0.0	0.05	25.12	0.01	1.871	10.86	0.00	0.0	0.0	0.0	—	0.87	0.89	—	2.9	0.008	0.67	0.0	0.04	24.39	0.01	1.886	8.14	0.00	0.0	0.0	0.0	—	0.26	0.87	0.91	—	8345	0	2	387	21	0	0	logfile

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