Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BFM	44500	2025-01-21	2024-04-18	2.71	2.98	2.81	2.9	0.004	0.58	0.0	0.05	13.66	0.00	1.952	4.33	0.16	1.3	98.7	0.0	2.36	0.67	0.83	3.74	2.9	0.002	0.49	0.0	0.04	15.74	0.00	2.414	2.98	0.83	1.1	98.9	0.0	2.28	0.35	0.65	0.84	3.52	47609	3100	4	0	1	3	24012	logfile
✔	9BFN	44501	2025-01-21	2024-04-18	2.71	2.89	3.07	3.0	0.004	0.55	1.0	0.04	13.36	0.00	1.997	4.29	0.00	1.2	98.8	0.0	1.98	0.66	0.82	3.38	2.9	0.003	0.51	0.0	0.04	15.64	0.00	2.368	3.12	0.91	1.5	98.5	0.0	2.07	1.56	0.64	0.83	3.12	47679	3100	6	0	3	5	24004	logfile
✔	8Z4L	39767	2025-01-24	2024-04-17	2.85	3.07	2.94	3.1	0.008	1.23	3.0	0.07	18.49	0.01	2.088	7.90	1.54	4.5	95.4	0.1	-2.71	0.70	0.80	2.73	3.1	0.005	0.67	0.0	0.04	19.03	0.00	2.127	9.73	4.00	2.9	97.1	0.0	0.04	1.71	0.70	0.83	3.08	22713	2683	23	89	9	0	0	logfile
✔	9BFi	44497	2025-01-13	2024-04-17	2.66	2.90	2.78	2.9	0.003	0.68	0.0	0.04	12.28	0.01	2.274	2.64	0.00	1.5	98.5	0.0	0.42	0.55	0.80	3.23	2.9	0.003	0.55	0.0	0.04	14.69	0.00	2.608	3.83	0.76	2.1	97.7	0.2	1.91	0.33	0.52	0.81	3.06	3766	489	1	0	0	0	0	logfile
✔	9F0L	50113	2025-01-14	2024-04-17	2.76	3.53	2.77	3.3	0.002	0.43	0.0	0.03	18.24	0.00	2.271	7.78	0.84	0.4	99.6	0.0	3.17	0.87	0.84	2.02	3.3	0.003	0.48	0.0	0.04	18.28	0.00	2.544	5.92	2.52	0.9	99.1	0.0	4.17	0.32	0.83	0.82	1.52	6119	791	1	0	0	0	0	logfile
✔	9BFH	44496	2025-01-21	2024-04-17	2.62	2.80	2.73	2.8	0.005	0.54	0.0	0.04	13.42	0.00	2.196	3.49	0.04	1.2	98.8	0.0	1.99	0.64	0.81	3.62	2.8	0.003	0.52	0.0	0.04	15.90	0.00	2.321	2.80	1.43	1.3	98.7	0.0	1.92	0.37	0.67	0.84	3.54	47579	3100	4	0	1	5	24002	logfile
✔	9BFJ	44498	2025-01-13	2024-04-17	2.35	2.59	2.47	2.6	0.005	0.65	0.0	0.04	15.09	0.01	2.196	3.24	0.00	1.0	99.0	0.0	0.78	0.61	0.86	4.12	2.6	0.002	0.50	0.0	0.04	15.37	0.00	2.283	5.84	1.00	1.4	98.6	0.0	2.08	0.79	0.60	0.86	3.06	3833	496	2	0	3	0	0	logfile
✔	8Z4J	39766	2025-01-23	2024-04-17	2.97	3.22	3.08	3.2	0.008	1.36	1.0	0.07	18.57	0.01	2.067	9.56	1.94	5.6	94.1	0.3	-2.99	0.73	0.81	2.53	3.2	0.005	0.71	0.0	0.04	18.83	0.00	2.100	10.01	3.12	3.8	96.0	0.2	-0.25	0.52	0.73	0.83	2.63	20655	2521	20	72	7	0	0	logfile
✔	9BER	44482	2025-01-23	2024-04-16	4.1	4.97	4.17	4.1	0.005	0.83	1.0	0.06	16.15	0.01	1.899	5.81	0.24	7.4	92.5	0.1	-2.06	0.83	0.81	—	4.2	0.012	0.68	0.0	0.05	12.65	0.00	2.395	11.77	0.00	8.0	92.0	0.0	-1.73	0.83	0.84	0.84	—	20350	2416	36	0	100	0	0	logfile
✔	8Z40	39759	2025-01-24	2024-04-16	3.26	3.96	3.30	3.6	0.003	0.66	0.0	0.04	16.15	0.01	2.201	7.97	0.13	5.2	94.6	0.2	0.15	0.88	0.86	2.25	3.6	0.003	0.59	0.0	0.04	16.53	0.00	2.462	5.31	1.56	4.9	95.0	0.1	0.74	0.35	0.88	0.87	2.09	21893	2810	6	0	0	0	0	logfile
✔	9BF1	44486	2025-01-22	2024-04-16	3.1	2.28	3.13	3.8	0.003	0.48	0.0	0.04	14.85	0.00	2.174	7.67	0.00	5.3	94.7	0.0	0.71	0.47	0.28	0.12	2.0	0.003	0.56	0.0	0.04	17.07	0.00	2.518	8.77	1.65	4.4	95.6	0.0	0.71	1.45	0.72	0.73	1.93	18158	2244	2	0	0	0	0	logfile
✔	9BF5	44490	2025-01-23	2024-04-16	3.07	2.31	3.11	2.0	0.002	0.50	0.0	0.04	16.90	0.00	2.131	5.28	0.00	5.7	94.3	0.0	-0.15	0.77	0.76	1.93	2.0	0.003	0.56	0.0	0.04	17.66	0.00	2.331	3.43	2.37	6.5	93.5	0.0	0.07	0.31	0.77	0.77	1.99	19742	2380	4	26	0	0	0	logfile
✔	9BF6	44491	2025-01-23	2024-04-16	4.5	7.51	4.66	4.5	0.003	0.67	2.0	0.05	12.77	0.00	2.022	3.80	0.10	8.4	91.4	0.2	-1.57	0.83	0.78	—	4.5	0.003	0.69	0.0	0.05	12.86	0.00	2.356	11.90	0.00	8.8	91.0	0.1	-1.52	0.87	0.84	0.81	—	20330	2367	39	0	130	0	0	logfile
✔	9BEi	44479	2025-01-14	2024-04-15	4.16	4.77	4.14	4.2	0.003	0.78	0.0	0.05	14.43	0.01	2.016	21.15	0.00	9.2	90.7	0.1	-1.93	0.85	0.73	—	4.2	0.003	0.73	0.0	0.04	14.57	0.01	2.444	15.81	0.00	8.1	91.8	0.1	-1.44	0.43	0.85	0.73	—	6649	862	5	0	0	0	0	logfile
✔	9BEE	44477	2025-01-13	2024-04-15	3.4	3.98	3.21	3.9	0.013	1.84	1.0	0.10	11.72	0.02	2.467	4.56	0.00	11.9	88.1	0.0	-2.32	0.47	0.59	1.69	3.9	0.002	0.58	0.0	0.05	15.83	0.00	2.356	6.19	3.45	3.8	96.2	0.0	-0.44	1.53	0.50	0.68	2.14	3046	189	2	0	7	0	1501	logfile
✔	9EZM	50089	2025-01-21	2024-04-12	2.9	2.91	2.78	2.9	0.004	0.69	0.0	0.05	13.38	0.01	2.054	2.95	0.00	1.7	98.3	0.0	-1.94	0.55	0.87	3.26	2.9	0.005	0.68	0.0	0.05	16.92	0.00	2.460	1.87	4.05	2.6	97.4	0.0	-0.15	1.20	0.55	0.89	3.19	68022	8766	18	0	0	0	0	logfile
✔	8Z27	39743	2025-01-19	2024-04-12	2.86	3.87	2.96	3.2	0.007	1.41	9.0	0.11	24.39	0.02	2.290	7.15	32.69	1.4	98.2	0.4	3.16	0.64	0.48	0.87	3.2	0.003	0.78	0.0	0.04	18.35	0.01	2.552	14.65	3.63	4.2	95.6	0.2	0.17	1.35	0.77	0.74	0.79	8596	1047	8	0	14	0	0	logfile
✔	9BDE	44450	2025-01-21	2024-04-11	4.18	4.60	4.16	4.2	0.002	0.59	0.0	0.04	13.84	0.00	2.153	18.99	0.00	6.7	93.3	0.0	-1.80	0.86	0.78	—	4.2	0.004	0.71	0.0	0.04	13.90	0.00	2.098	17.93	0.00	8.8	91.2	0.0	-2.36	0.36	0.87	0.80	—	17216	2340	8	0	12	0	0	logfile
✔	8Z1F	39726	2025-01-18	2024-04-11	4.3	4.91	4.67	4.5	0.002	0.52	0.0	0.04	18.29	0.00	1.966	6.76	0.00	5.3	94.1	0.6	0.23	0.74	0.55	—	4.5	0.004	0.67	0.0	0.05	19.18	0.00	1.753	14.17	0.00	9.9	89.7	0.5	-1.72	1.26	0.77	0.64	—	12569	668	3	66	3	0	5934	logfile
✔	9EZ8	50071	2025-01-22	2024-04-11	2.7	2.74	2.62	2.7	0.003	0.54	0.0	0.05	10.65	0.02	2.160	5.49	3.36	0.0	100.0	0.0	2.00	0.82	0.87	3.78	2.7	0.002	0.44	0.0	0.05	16.01	0.00	2.589	5.65	2.30	1.3	98.7	0.0	1.23	0.55	0.80	0.88	3.19	69480	9420	60	0	0	0	0	logfile

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