Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9F2K	50149	2025-01-21	2024-04-23	2.48	2.66	2.53	2.7	0.004	0.64	0.0	0.04	16.42	0.00	2.026	10.48	1.14	2.2	97.8	0.0	-0.09	0.65	0.83	4.08	2.7	0.003	0.56	0.0	0.04	16.44	0.00	2.559	4.96	2.80	1.4	98.6	0.0	1.14	0.89	0.66	0.84	4.36	16184	2052	8	0	4	0	0	logfile
✔	8Z9E	39861	2025-01-23	2024-04-23	3.13	3.34	3.22	3.3	0.006	1.06	1.0	0.06	18.26	0.01	2.136	7.61	0.69	4.3	95.3	0.4	-2.57	0.70	0.80	2.47	3.4	0.003	0.59	0.0	0.04	18.56	0.00	2.045	8.79	2.43	2.7	97.2	0.0	0.16	1.07	0.71	0.82	2.68	20770	2484	20	73	7	0	0	logfile
✔	8Z9A	39858	2025-01-18	2024-04-23	3.0	3.24	3.08	3.3	0.005	0.84	0.0	0.04	16.75	0.01	2.163	6.19	1.56	2.3	97.7	0.0	2.18	0.58	0.81	1.75	3.3	0.004	0.53	0.0	0.04	16.81	0.00	2.586	5.43	2.62	2.3	97.7	0.0	3.14	1.11	0.54	0.79	1.85	13021	1557	8	0	8	0	0	logfile
✔	8Z8N	39849	2025-01-19	2024-04-22	2.79	3.11	2.79	3.0	0.003	0.56	0.0	0.04	12.85	0.01	2.114	10.07	0.00	4.2	95.8	0.0	-0.39	0.75	0.84	2.78	3.0	0.003	0.65	0.0	0.04	16.33	0.00	2.451	8.38	2.07	4.3	95.7	0.0	-0.12	1.01	0.77	0.87	2.84	12485	1510	5	15	0	0	0	logfile
✔	8Z90	39852	2025-01-19	2024-04-22	2.87	3.20	2.88	3.1	0.003	0.67	0.0	0.04	14.44	0.01	2.113	10.76	0.00	3.8	96.2	0.0	-0.73	0.81	0.88	3.65	3.1	0.004	0.68	0.0	0.04	16.81	0.01	2.445	9.89	1.20	4.3	95.7	0.0	0.12	1.00	0.81	0.90	3.31	13481	1575	6	35	1	0	0	logfile
✔	9BHT	44552	2025-01-18	2024-04-22	3.26	4.41	3.27	3.3	0.006	1.13	4.0	0.05	19.39	0.01	2.058	21.47	2.05	6.0	93.0	1.0	-0.68	0.84	0.70	1.70	3.4	0.003	0.75	0.0	0.05	18.70	0.00	2.485	11.61	2.69	4.9	94.8	0.3	0.46	1.18	0.91	0.83	1.22	12725	1562	12	4	2	0	0	logfile
✔	9F29	50140	2025-01-19	2024-04-22	2.94	2.21	—	2.0	0.003	0.49	0.0	0.04	13.45	0.00	2.256	3.38	0.00	3.7	96.3	0.0	-0.15	0.81	0.82	3.62	2.0	0.002	0.51	0.0	0.04	16.32	0.00	2.409	3.60	1.58	3.0	97.0	0.0	0.47	1.04	0.81	0.82	2.85	13520	1688	5	0	4	0	0	logfile
✔	9BHW	44555	2025-01-15	2024-04-22	2.72	3.56	2.84	3.3	0.005	0.72	0.0	0.05	14.14	0.00	2.158	6.79	0.31	2.0	98.0	0.0	0.77	0.85	0.86	4.93	3.3	0.004	0.63	0.0	0.04	15.95	0.00	2.464	5.02	1.13	2.4	97.6	0.0	1.94	0.67	0.79	0.85	4.16	8759	1071	8	4	0	0	0	logfile
✔	9F2A	50143	2025-01-19	2024-04-22	2.91	2.22	—	2.0	0.004	0.55	0.0	0.04	12.98	0.01	2.218	3.12	0.00	2.7	97.3	0.0	0.23	0.82	0.82	3.64	2.0	0.004	0.58	0.0	0.05	16.42	0.01	2.146	3.37	0.96	3.0	97.0	0.0	0.40	0.37	0.82	0.82	3.00	13557	1692	5	0	4	0	0	logfile
✔	8Z8J	39848	2025-01-20	2024-04-22	3.16	3.46	3.17	3.4	0.002	0.55	0.0	0.04	13.58	0.01	2.218	9.57	0.00	4.7	95.3	0.0	-0.26	0.79	0.87	2.49	3.4	0.002	0.57	0.0	0.04	15.13	0.00	2.442	7.96	1.20	4.3	95.7	0.0	0.36	0.37	0.80	0.89	2.13	13766	1665	5	15	0	0	0	logfile
✔	8Z8X	39850	2025-01-20	2024-04-22	3.06	3.36	3.12	3.3	0.003	0.61	0.0	0.04	14.96	0.01	2.148	12.31	0.00	4.9	95.1	0.0	-0.67	0.80	0.87	2.83	3.3	0.003	0.63	0.0	0.04	16.40	0.00	2.530	8.99	1.09	4.6	95.4	0.0	0.00	1.33	0.82	0.90	2.81	14768	1730	6	35	1	0	0	logfile
✔	8Z85	39838	2025-01-17	2024-04-21	2.3	2.74	2.30	2.6	0.002	0.48	0.0	0.04	13.26	0.00	2.234	7.19	0.00	2.4	97.6	0.0	0.02	0.79	0.86	4.75	2.6	0.005	0.60	0.0	0.04	15.49	0.00	2.471	5.74	1.69	2.6	97.4	0.0	0.61	1.52	0.80	0.88	4.41	10467	1256	5	18	0	0	0	logfile
✔	8Z7N	39820	2025-01-21	2024-04-20	3.58	3.87	3.60	3.6	0.010	1.35	0.0	0.07	22.40	0.01	1.848	53.22	29.65	22.6	76.7	0.7	-5.94	0.61	0.50	0.67	3.6	0.005	0.99	0.0	0.05	18.65	0.01	2.392	24.04	5.40	15.2	84.8	0.0	-3.42	1.86	0.61	0.49	0.50	16641	2094	15	0	18	0	0	logfile
✔	9BHB	44539	2025-01-13	2024-04-19	3.1	3.25	2.99	3.3	0.006	0.81	0.0	0.05	13.80	0.01	2.274	5.99	0.35	6.6	93.4	0.0	-2.11	0.60	0.83	4.31	3.3	0.004	0.59	0.0	0.04	15.08	0.00	2.533	7.72	3.52	5.1	94.9	0.0	0.51	0.81	0.59	0.84	3.98	2626	328	3	0	0	0	0	logfile
✔	9BH8	44536	2025-01-19	2024-04-19	3.6	3.61	3.50	3.5	0.003	0.64	0.0	0.04	15.49	0.01	2.310	1.53	0.15	0.7	99.3	0.0	-2.28	0.74	0.75	2.34	3.5	0.003	0.69	0.0	0.04	17.55	0.00	2.504	6.74	1.47	2.1	97.9	0.0	0.60	1.23	0.76	0.76	1.40	13051	1574	4	44	0	0	0	logfile
✔	9BH7	44535	2025-01-18	2024-04-19	3.5	3.43	3.54	3.6	0.003	0.64	0.0	0.04	12.66	0.01	2.370	1.58	0.00	0.7	99.2	0.1	-1.16	0.83	0.78	2.21	3.6	0.003	0.59	0.0	0.04	15.97	0.00	2.516	6.12	2.40	2.0	98.0	0.0	1.99	1.45	0.83	0.79	0.90	12166	1544	2	0	0	0	0	logfile
✔	9BGV	44524	2025-01-18	2024-04-19	3.65	2.55	3.64	2.1	0.005	0.69	0.0	0.05	14.63	0.00	1.891	11.07	0.07	6.5	93.5	0.0	-0.54	0.71	0.67	1.15	2.1	0.003	0.75	0.0	0.05	16.87	0.00	2.198	9.72	2.64	4.8	95.2	0.0	-0.40	0.52	0.70	0.67	0.75	12588	1574	4	0	2	0	0	logfile
✔	9BH9	44537	2025-01-19	2024-04-19	3.5	3.53	3.42	3.5	0.003	0.68	0.0	0.05	15.03	0.01	2.362	1.75	0.07	0.6	99.4	0.0	-2.11	0.72	0.76	2.80	3.4	0.003	0.66	0.0	0.04	17.72	0.00	2.467	6.92	1.55	2.1	97.9	0.0	0.73	2.06	0.74	0.76	1.53	13155	1574	4	50	0	0	0	logfile
✔	9BHA	44538	2025-01-19	2024-04-19	3.5	3.62	3.42	3.6	0.003	0.65	0.0	0.04	15.47	0.01	2.343	1.70	0.00	0.5	99.4	0.1	-1.83	0.72	0.77	2.78	3.6	0.004	0.65	0.0	0.04	17.81	0.00	2.507	6.46	2.05	2.1	97.9	0.0	0.95	0.80	0.74	0.78	2.04	13264	1586	4	49	0	0	0	logfile
✔	9BH6	44534	2025-01-26	2024-04-19	3.3	2.41	3.32	3.3	0.003	0.61	0.0	0.04	12.64	0.01	2.304	1.35	0.00	0.5	99.4	0.1	-1.51	0.84	0.81	3.48	3.3	0.002	0.58	0.0	0.04	15.39	0.00	2.497	5.15	1.49	1.4	98.6	0.0	1.42	1.36	0.84	0.82	2.35	24388	3096	4	0	0	0	0	logfile

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