The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 9BC7 | 44426 | 2025-01-20 | 2024-04-08 | 3.3 | 2.73 | 3.21 | 3.4 | 0.015 | 1.83 | 0.0 | 0.10 | 14.65 | 0.01 | 2.210 | 3.53 | 0.55 | 2.2 | 97.8 | 0.0 | -1.65 | 0.52 | 0.66 | 4.43 | 3.4 | 0.002 | 0.59 | 0.0 | 0.04 | 16.58 | 0.00 | 2.525 | 5.35 | 0.97 | 3.5 | 96.5 | 0.0 | 1.99 | 0.65 | 0.63 | 0.77 | 2.99 | 15628 | 2024 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 9EXS | 50048 | 2025-01-20 | 2024-04-08 | 3.28 | 4.23 | 3.43 | 3.9 | 0.012 | 1.63 | 0.0 | 0.09 | 12.22 | 0.02 | 1.879 | 0.00 | 0.37 | 2.1 | 97.9 | 0.0 | 0.19 | 0.83 | 0.76 | 3.45 | 3.9 | 0.002 | 0.56 | 0.0 | 0.04 | 13.53 | 0.00 | 2.199 | 3.31 | 0.37 | 1.6 | 98.4 | 0.0 | 2.28 | 0.75 | 0.82 | 0.79 | 2.91 | 15691 | 1004 | 3 | 0 | 1 | 0 | 7675 | logfile |
✔ | 9BC6 | 44425 | 2025-01-20 | 2024-04-07 | 2.5 | 2.14 | 2.43 | 2.4 | 0.012 | 1.77 | 0.0 | 0.09 | 12.25 | 0.01 | 2.247 | 2.87 | 0.56 | 2.7 | 97.3 | 0.0 | -0.64 | 0.53 | 0.77 | 6.12 | 2.4 | 0.002 | 0.56 | 0.0 | 0.04 | 14.56 | 0.00 | 2.650 | 5.12 | 1.40 | 1.7 | 98.3 | 0.0 | 2.46 | 0.48 | 0.62 | 0.84 | 4.11 | 14972 | 1936 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 8YZi | 39694 | 2025-01-21 | 2024-04-07 | 3.05 | 4.06 | 3.11 | 3.4 | 0.003 | 0.61 | 0.0 | 0.05 | 14.40 | 0.00 | 2.232 | 4.44 | 0.17 | 3.3 | 96.7 | 0.0 | 0.34 | 0.87 | 0.82 | 3.13 | 3.4 | 0.003 | 0.65 | 0.0 | 0.04 | 14.84 | 0.00 | 2.190 | 4.14 | 1.55 | 3.6 | 96.4 | 0.0 | 0.44 | 0.83 | 0.91 | 0.90 | 2.77 | 16699 | 2030 | 18 | 0 | 29 | 0 | 0 | logfile |
✔ | 8YZK | 39696 | 2025-01-14 | 2024-04-07 | 3.4 | 2.39 | 3.43 | 1.7 | 0.003 | 0.76 | 0.0 | 0.04 | 18.28 | 0.01 | 2.181 | 13.45 | 1.07 | 8.9 | 91.1 | 0.0 | -1.21 | 0.68 | 0.59 | 0.53 | 1.6 | 0.004 | 0.76 | 0.0 | 0.04 | 18.29 | 0.00 | 2.463 | 16.15 | 6.13 | 9.5 | 90.5 | 0.0 | -1.02 | 0.90 | 0.69 | 0.63 | 0.38 | 6470 | 866 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 9BBL | 44421 | 2025-01-17 | 2024-04-06 | 2.5 | 2.33 | 2.51 | 2.6 | 0.011 | 2.11 | 2.0 | 0.10 | 10.02 | 0.01 | 2.489 | 0.19 | 0.00 | 9.7 | 88.9 | 1.4 | -2.48 | 0.27 | 0.65 | 5.75 | 2.6 | 0.005 | 0.70 | 0.0 | 0.05 | 16.94 | 0.00 | 2.430 | 3.27 | 0.85 | 8.8 | 91.2 | 0.0 | -3.01 | 2.35 | 0.39 | 0.83 | 5.45 | 10395 | 666 | 9 | 0 | 0 | 0 | 5301 | logfile |
✔ | 9BBM | 44422 | 2025-01-14 | 2024-04-06 | 3.2 | 3.01 | 3.08 | 3.2 | 0.012 | 2.05 | 4.0 | 0.11 | 13.73 | 0.01 | 2.513 | 0.00 | 0.51 | 12.7 | 82.4 | 4.9 | -3.91 | 0.33 | 0.62 | 3.86 | 3.2 | 0.003 | 0.67 | 0.0 | 0.05 | 16.57 | 0.00 | 2.378 | 5.75 | 1.03 | 9.5 | 89.6 | 0.9 | -3.34 | 1.32 | 0.35 | 0.73 | 4.18 | 6966 | 444 | 6 | 0 | 0 | 0 | 3558 | logfile |
✔ | 9BBF | 44419 | 2025-01-23 | 2024-04-05 | 3.6 | 3.87 | 3.69 | 3.9 | 0.004 | 0.71 | 0.0 | 0.05 | 18.12 | 0.01 | 2.231 | 9.08 | 0.36 | 5.8 | 94.2 | 0.0 | -1.44 | 0.71 | 0.81 | 2.25 | 3.8 | 0.004 | 0.78 | 1.0 | 0.05 | 18.37 | 0.00 | 2.081 | 10.11 | 4.18 | 5.5 | 94.5 | 0.0 | -1.18 | 0.73 | 0.72 | 0.82 | 2.51 | 19880 | 2533 | 15 | 0 | 14 | 0 | 0 | logfile |
✔ | 9BAZ | 44415 | 2025-01-15 | 2024-04-05 | 2.76 | 3.45 | 2.80 | 3.3 | 0.004 | 0.63 | 0.0 | 0.04 | 16.56 | 0.00 | 2.117 | 12.04 | 0.50 | 3.2 | 96.8 | 0.0 | 0.19 | 0.71 | 0.71 | 2.69 | 3.3 | 0.004 | 0.67 | 0.0 | 0.04 | 16.88 | 0.00 | 2.426 | 9.84 | 4.15 | 3.6 | 96.4 | 0.0 | 0.19 | 0.29 | 0.72 | 0.72 | 2.60 | 8283 | 1090 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 9BBC | 44417 | 2025-01-15 | 2024-04-05 | 3.3 | 4.25 | 3.36 | 3.7 | 0.003 | 0.92 | 0.0 | 0.05 | 15.19 | 0.00 | 2.206 | 13.57 | 0.56 | 3.7 | 96.2 | 0.1 | 0.51 | 0.81 | 0.82 | 2.28 | 3.8 | 0.004 | 0.88 | 0.0 | 0.05 | 15.57 | 0.00 | 2.450 | 11.40 | 3.37 | 4.6 | 95.3 | 0.1 | 0.25 | 1.19 | 0.82 | 0.83 | 1.95 | 8440 | 1052 | 16 | 0 | 20 | 0 | 0 | logfile |
✔ | 9EWY | 50026 | 2025-01-14 | 2024-04-05 | 3.1 | 2.60 | 3.13 | 3.2 | 0.004 | 0.53 | 0.0 | 0.04 | 15.97 | 0.00 | 2.208 | 3.47 | 0.00 | 1.9 | 98.0 | 0.1 | 2.61 | 0.69 | 0.87 | 2.95 | 3.1 | 0.003 | 0.48 | 0.0 | 0.04 | 17.04 | 0.00 | 2.573 | 3.55 | 1.62 | 1.6 | 98.3 | 0.1 | 2.57 | 0.28 | 0.68 | 0.88 | 2.75 | 6496 | 815 | 2 | 0 | 3 | 0 | 0 | logfile |
✔ | 9EWX | 50025 | 2025-01-25 | 2024-04-05 | 3.17 | 2.84 | 3.08 | 3.0 | 0.002 | 0.42 | 0.0 | 0.04 | 17.57 | 0.00 | 2.031 | 3.78 | 0.88 | 0.7 | 99.3 | 0.0 | 2.80 | 0.68 | 0.88 | 2.05 | 3.0 | 0.004 | 0.56 | 0.0 | 0.05 | 16.82 | 0.00 | 2.541 | 5.51 | 2.92 | 2.7 | 97.3 | 0.0 | 2.50 | 0.96 | 0.68 | 0.89 | 1.85 | 23989 | 3289 | 23 | 0 | 0 | 0 | 0 | logfile |
✔ | 9BAP | 44410 | 2025-01-14 | 2024-04-04 | 2.88 | 3.32 | 2.89 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 15.77 | 0.00 | 2.159 | 9.48 | 0.84 | 3.3 | 96.7 | 0.0 | -0.35 | 0.61 | 0.67 | 2.09 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 16.23 | 0.00 | 2.537 | 7.07 | 4.53 | 2.9 | 97.1 | 0.0 | -0.07 | 0.32 | 0.62 | 0.68 | 1.65 | 6535 | 887 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 9EWQ | 50022 | 2025-01-18 | 2024-04-04 | 3.0 | 3.34 | 3.05 | 3.3 | 0.004 | 0.57 | 0.0 | 0.05 | 13.59 | 0.00 | 2.141 | 4.88 | 0.08 | 5.2 | 94.8 | 0.0 | -1.34 | 0.82 | 0.88 | 4.02 | 3.3 | 0.004 | 0.80 | 1.0 | 0.05 | 15.06 | 0.00 | 2.361 | 3.71 | 1.73 | 3.3 | 96.7 | 0.0 | -1.04 | 0.22 | 0.76 | 0.88 | 3.49 | 11904 | 1540 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 9EWV | 50023 | 2025-01-17 | 2024-04-04 | 2.9 | 2.86 | 2.79 | 3.3 | 0.009 | 0.92 | 0.0 | 0.06 | 15.09 | 0.00 | 2.535 | 7.25 | 0.00 | 5.1 | 94.9 | 0.0 | -3.39 | 0.39 | 0.65 | 2.21 | 3.3 | 0.004 | 0.69 | 0.0 | 0.05 | 16.21 | 0.00 | 2.382 | 19.22 | 1.45 | 14.0 | 86.0 | 0.0 | -4.23 | 1.49 | 0.40 | 0.67 | 3.04 | 11040 | 768 | 12 | 0 | 0 | 0 | 5676 | logfile |
✔ | 9B9R | 44389 | 2025-01-14 | 2024-04-03 | 3.7 | 4.67 | 3.13 | 4.1 | 0.002 | 0.68 | 0.0 | 0.04 | 11.04 | 0.00 | 2.150 | 2.60 | 0.00 | 0.9 | 99.1 | 0.0 | 0.53 | 0.69 | 0.69 | 0.82 | 4.2 | 0.003 | 0.69 | 0.0 | 0.04 | 15.75 | 0.00 | 2.278 | 8.52 | 1.56 | 1.6 | 98.4 | 0.0 | 1.42 | 1.43 | 0.71 | 0.76 | 1.47 | 6928 | 444 | 4 | 0 | 0 | 0 | 3436 | logfile |
✔ | 9BA5 | 44396 | 2025-01-16 | 2024-04-03 | 3.51 | 2.38 | 3.57 | 3.6 | 0.011 | 1.26 | 2.0 | 0.07 | 12.94 | 0.01 | 2.389 | 2.35 | 0.00 | 5.3 | 94.7 | 0.0 | -1.42 | 0.61 | 0.60 | 1.98 | 3.6 | 0.005 | 0.65 | 0.0 | 0.04 | 14.56 | 0.00 | 2.563 | 8.51 | 1.66 | 3.2 | 96.8 | 0.0 | -0.23 | 1.16 | 0.65 | 0.62 | 1.61 | 9012 | 1146 | 4 | 0 | 10 | 0 | 0 | logfile |
✔ | 9BAA | 44402 | 2025-01-15 | 2024-04-03 | 3.39 | 3.77 | 3.55 | 3.7 | 0.004 | 0.63 | 0.0 | 0.04 | 14.98 | 0.00 | 2.231 | 9.22 | 0.12 | 8.1 | 91.7 | 0.2 | 1.06 | 0.63 | 0.81 | 1.62 | 3.7 | 0.004 | 0.96 | 1.0 | 0.04 | 16.68 | 0.00 | 2.256 | 10.28 | 2.47 | 8.3 | 91.4 | 0.3 | 1.76 | 0.34 | 0.61 | 0.81 | 1.23 | 7771 | 994 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 9BA4 | 44395 | 2025-01-20 | 2024-04-03 | 3.54 | 2.59 | 3.62 | 3.7 | 0.010 | 1.24 | 2.0 | 0.07 | 12.63 | 0.01 | 2.392 | 1.86 | 0.00 | 5.8 | 94.2 | 0.0 | -1.80 | 0.66 | 0.68 | 1.73 | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 13.91 | 0.00 | 2.494 | 6.92 | 0.93 | 2.8 | 97.2 | 0.0 | -0.30 | 0.46 | 0.66 | 0.64 | 2.00 | 15204 | 1940 | 10 | 0 | 16 | 0 | 0 | logfile |
✔ | 8YY1 | 39663 | 2025-01-16 | 2024-04-03 | 3.6 | 3.97 | 3.61 | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 4.69 | 0.01 | 2.275 | 4.11 | 0.00 | 5.8 | 94.2 | 0.0 | 2.17 | 0.63 | 0.39 | — | 2.5 | 0.003 | 0.60 | 0.0 | 0.04 | 4.46 | 0.01 | 2.593 | 1.77 | 0.00 | 5.3 | 94.7 | 0.0 | 2.41 | 1.74 | 0.67 | 0.72 | — | 9097 | 1845 | 14 | 0 | 0 | 0 | 0 | logfile |