Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YY1	39663	2025-01-16	2024-04-03	3.6	3.97	3.61	3.5	0.003	0.56	0.0	0.04	4.69	0.01	2.275	4.11	0.00	5.8	94.2	0.0	2.17	0.63	0.39	—	2.5	0.003	0.60	0.0	0.04	4.46	0.01	2.593	1.77	0.00	5.3	94.7	0.0	2.41	1.74	0.67	0.72	—	9097	1845	14	0	0	0	0	logfile
✔	8YY0	39662	2025-01-19	2024-04-03	3.6	4.03	3.54	2.6	0.004	0.85	0.0	0.05	5.98	0.01	2.470	1.56	0.00	5.8	94.0	0.2	1.32	0.67	0.72	—	2.5	0.003	0.56	0.0	0.04	5.80	0.00	2.415	0.71	0.00	7.5	92.5	0.0	1.42	0.21	0.67	0.72	—	14117	1845	14	0	0	0	5020	logfile
✔	8YXZ	39661	2025-01-19	2024-04-03	3.0	3.42	3.20	3.4	0.011	1.66	2.0	0.09	12.99	0.01	2.396	0.58	0.08	2.5	97.5	0.1	-0.44	0.73	0.85	2.48	3.3	0.003	0.62	0.0	0.04	15.17	0.00	2.513	5.69	1.49	2.6	97.4	0.0	2.53	0.60	0.75	0.88	1.04	13478	1845	14	0	0	0	0	logfile
✔	9B9G	44382	2025-01-14	2024-04-02	3.5	4.01	3.71	3.5	0.003	0.73	0.0	0.04	16.80	0.00	2.073	11.89	2.32	4.7	95.3	0.0	0.73	0.81	0.78	0.84	3.5	0.003	0.71	0.0	0.04	17.15	0.00	2.415	8.74	2.64	4.5	95.5	0.0	1.32	0.90	0.81	0.79	0.66	48676	6075	12	0	8	0	0	logfile
✔	8YX6	39648	2025-01-19	2024-04-02	2.9	3.57	2.95	3.4	0.007	0.55	0.0	0.04	8.16	0.00	1.968	7.32	0.00	0.3	99.7	0.0	2.41	0.64	0.83	4.03	3.4	0.005	0.60	0.0	0.04	13.47	0.00	1.590	8.49	1.68	1.2	98.8	0.0	1.90	0.52	0.57	0.81	3.57	13080	1620	15	0	25	0	0	logfile
✔	8YX7	39649	2025-01-19	2024-04-02	2.8	3.51	2.95	3.3	0.007	0.58	0.0	0.04	10.87	0.00	2.030	7.55	0.00	0.9	99.1	0.0	2.69	0.62	0.82	3.35	3.3	0.003	0.59	0.0	0.04	14.51	0.00	2.512	7.77	1.19	1.9	98.1	0.0	2.02	0.58	0.56	0.79	3.69	13070	1620	15	0	15	0	0	logfile
✔	8YX8	39650	2025-01-19	2024-04-02	2.8	3.36	2.85	3.2	0.007	0.58	0.0	0.04	12.02	0.00	2.281	8.00	0.00	0.0	100.0	0.0	2.24	0.62	0.82	3.60	3.2	0.006	0.63	0.0	0.04	15.22	0.00	2.584	10.20	2.38	1.5	98.5	0.0	1.49	1.07	0.64	0.86	3.72	13070	1620	15	0	15	0	0	logfile
✔	9B8Z	44363	2025-01-14	2024-04-01	3.4	4.06	3.36	3.8	0.004	0.48	0.0	0.03	10.45	0.00	2.014	3.84	0.54	4.2	95.8	0.0	2.44	0.70	0.85	2.22	3.8	0.003	0.56	0.0	0.04	14.36	0.00	2.355	5.66	2.03	2.6	97.4	0.0	2.18	0.53	0.69	0.87	1.92	7509	978	2	0	3	0	0	logfile
✔	8YWX	39646	2025-01-14	2024-04-01	3.4	3.68	3.38	3.6	0.009	2.56	46.0	0.13	13.58	0.01	1.898	22.95	2.43	3.4	96.6	0.0	-1.55	0.67	0.73	2.13	3.6	0.005	0.84	0.0	0.05	15.08	0.01	2.295	9.84	3.18	6.0	94.0	0.0	-1.52	0.74	0.69	0.76	1.30	4803	623	3	0	0	0	0	logfile
✔	8YWT	39644	2025-01-19	2024-04-01	2.8	3.14	2.88	3.2	0.013	1.93	10.0	0.09	14.34	0.02	2.228	1.55	3.36	2.1	97.6	0.3	-1.45	0.50	0.68	1.86	3.2	0.006	0.69	0.0	0.04	16.18	0.01	2.570	4.54	2.01	2.7	97.3	0.0	2.00	1.02	0.67	0.87	2.32	13986	1895	24	0	0	70	0	logfile
✔	9B8X	44361	2025-01-14	2024-04-01	3.0	3.73	2.92	3.4	0.002	0.42	0.0	0.03	9.22	0.00	2.325	4.87	0.40	2.8	97.2	0.0	2.41	0.60	0.86	2.62	3.4	0.002	0.49	0.0	0.04	12.43	0.00	2.355	3.94	0.54	2.8	97.2	0.0	2.47	0.98	0.61	0.88	2.70	7564	993	2	0	2	0	0	logfile
✔	9B91	44365	2025-01-14	2024-04-01	3.3	4.21	3.19	3.7	0.005	0.50	0.0	0.04	11.38	0.00	2.119	6.47	0.28	3.9	96.1	0.0	1.45	0.60	0.83	2.44	3.8	0.004	0.58	0.0	0.04	13.74	0.00	2.289	6.68	2.76	3.5	96.5	0.0	2.14	0.61	0.60	0.86	2.17	7511	993	2	0	3	0	0	logfile
✔	9B8R	44356	2025-01-16	2024-03-31	3.5	3.75	3.63	3.7	0.015	1.75	3.0	0.11	15.44	0.02	2.205	9.34	2.06	4.3	94.6	1.1	-1.71	0.62	0.56	1.83	3.7	0.003	0.69	0.0	0.04	17.41	0.00	2.494	9.24	2.26	2.2	97.8	0.0	1.10	1.33	0.70	0.76	1.69	9425	1119	4	22	1	0	0	logfile
✔	9B8Q	44352	2025-01-18	2024-03-31	3.8	4.19	4.05	4.2	0.005	0.62	0.0	0.04	16.29	0.00	2.034	10.39	3.66	4.3	95.7	0.1	2.27	0.54	0.70	0.62	4.2	0.003	0.57	0.0	0.03	17.42	0.00	2.383	7.15	5.00	2.3	97.6	0.1	3.83	0.55	0.53	0.70	0.62	12348	1886	9	0	0	0	0	logfile
✔	9B8K	44348	2025-01-19	2024-03-30	2.96	2.30	3.10	2.1	0.011	1.26	0.0	0.06	11.29	0.00	2.047	1.95	0.13	2.4	97.3	0.3	0.90	0.71	0.65	2.50	2.0	0.003	0.68	0.0	0.04	15.28	0.01	2.350	7.34	1.48	4.2	95.7	0.1	-0.01	0.68	0.71	0.66	2.06	14231	1761	1	0	0	0	0	logfile
✔	8YWA	39627	2025-01-21	2024-03-30	3.14	3.36	3.17	3.4	0.004	0.61	0.0	0.04	12.54	0.01	2.184	10.12	0.14	5.9	93.9	0.2	1.18	0.51	0.56	1.26	3.3	0.019	1.19	0.0	0.07	15.15	0.01	2.166	18.04	3.32	9.5	89.9	0.6	-0.38	1.00	0.60	0.74	2.69	16619	1486	11	0	9	0	6751	logfile
✔	9B8J	44347	2025-01-14	2024-03-30	3.4	2.22	3.37	2.1	0.003	0.47	0.0	0.04	11.29	0.00	2.233	4.79	0.84	4.1	95.9	0.0	-0.62	0.71	0.76	3.47	2.1	0.003	0.56	0.0	0.04	14.61	0.00	2.495	5.39	2.75	3.8	96.2	0.0	-0.63	0.28	0.73	0.77	2.84	7610	961	10	0	7	0	0	logfile
✔	8YW4	39622	2025-01-15	2024-03-29	3.26	3.55	3.31	3.5	0.004	0.56	0.0	0.04	18.35	0.00	2.190	7.94	0.33	5.2	94.6	0.2	-0.25	0.56	0.66	0.32	3.5	0.004	0.62	0.0	0.04	18.54	0.00	2.519	6.94	3.58	5.3	94.5	0.2	0.65	1.19	0.63	0.83	1.67	8619	1082	6	0	0	0	0	logfile
✔	8YW3	39621	2025-01-16	2024-03-29	2.68	3.44	2.77	3.3	0.004	0.66	0.0	0.04	17.97	0.00	2.163	11.08	7.83	3.2	96.8	0.0	0.63	0.66	0.77	2.00	3.3	0.004	0.63	0.0	0.04	17.80	0.00	2.508	7.35	3.76	4.0	96.0	0.0	0.71	0.27	0.65	0.77	2.36	9231	1160	6	0	0	0	0	logfile
✔	8YVU	39614	2025-01-13	2024-03-29	3.9	4.30	3.86	4.2	0.003	0.71	0.0	0.04	13.76	0.00	2.277	12.74	0.00	4.1	95.5	0.4	1.38	0.50	0.63	0.56	4.2	0.003	0.71	0.0	0.04	16.38	0.00	2.599	9.64	2.83	4.3	95.5	0.2	1.55	0.51	0.53	0.66	-0.19	4216	530	10	0	2	0	0	logfile

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