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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 9B9Y | 44392 | 2025-01-14 | 2024-04-03 | 3.5 | 3.81 | 3.47 | 3.6 | 0.006 | 1.16 | 0.0 | 0.05 | 14.20 | 0.01 | 2.288 | 4.18 | 0.20 | 3.0 | 97.0 | 0.0 | 0.65 | 0.74 | 0.84 | 1.97 | 3.6 | 0.003 | 0.69 | 0.0 | 0.04 | 16.03 | 0.00 | 2.521 | 6.06 | 3.93 | 2.7 | 97.3 | 0.0 | 1.71 | 1.57 | 0.74 | 0.85 | 2.13 | 4753 | 601 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 9BA4 | 44395 | 2025-01-20 | 2024-04-03 | 3.54 | 2.59 | 3.62 | 3.7 | 0.010 | 1.24 | 2.0 | 0.07 | 12.63 | 0.01 | 2.392 | 1.86 | 0.00 | 5.8 | 94.2 | 0.0 | -1.80 | 0.66 | 0.68 | 1.73 | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 13.91 | 0.00 | 2.494 | 6.92 | 0.93 | 2.8 | 97.2 | 0.0 | -0.30 | 0.46 | 0.66 | 0.64 | 2.00 | 15204 | 1940 | 10 | 0 | 16 | 0 | 0 | logfile |
✔ | 8YY0 | 39662 | 2025-01-19 | 2024-04-03 | 3.6 | 4.03 | 3.54 | 2.6 | 0.004 | 0.85 | 0.0 | 0.05 | 5.98 | 0.01 | 2.470 | 1.56 | 0.00 | 5.8 | 94.0 | 0.2 | 1.32 | 0.67 | 0.72 | — | 2.5 | 0.003 | 0.56 | 0.0 | 0.04 | 5.80 | 0.00 | 2.415 | 0.71 | 0.00 | 7.5 | 92.5 | 0.0 | 1.42 | 0.21 | 0.67 | 0.72 | — | 14117 | 1845 | 14 | 0 | 0 | 0 | 5020 | logfile |
✔ | 8YX7 | 39649 | 2025-01-19 | 2024-04-02 | 2.8 | 3.51 | 2.95 | 3.3 | 0.007 | 0.58 | 0.0 | 0.04 | 10.87 | 0.00 | 2.030 | 7.55 | 0.00 | 0.9 | 99.1 | 0.0 | 2.69 | 0.62 | 0.82 | 3.35 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 14.51 | 0.00 | 2.512 | 7.77 | 1.19 | 1.9 | 98.1 | 0.0 | 2.02 | 0.58 | 0.56 | 0.79 | 3.69 | 13070 | 1620 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 9B9G | 44382 | 2025-01-14 | 2024-04-02 | 3.5 | 4.01 | 3.71 | 3.5 | 0.003 | 0.73 | 0.0 | 0.04 | 16.80 | 0.00 | 2.073 | 11.89 | 2.32 | 4.7 | 95.3 | 0.0 | 0.73 | 0.81 | 0.78 | 0.84 | 3.5 | 0.003 | 0.71 | 0.0 | 0.04 | 17.15 | 0.00 | 2.415 | 8.74 | 2.64 | 4.5 | 95.5 | 0.0 | 1.32 | 0.90 | 0.81 | 0.79 | 0.66 | 48676 | 6075 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 8YX8 | 39650 | 2025-01-19 | 2024-04-02 | 2.8 | 3.36 | 2.85 | 3.2 | 0.007 | 0.58 | 0.0 | 0.04 | 12.02 | 0.00 | 2.281 | 8.00 | 0.00 | 0.0 | 100.0 | 0.0 | 2.24 | 0.62 | 0.82 | 3.60 | 3.2 | 0.006 | 0.63 | 0.0 | 0.04 | 15.22 | 0.00 | 2.584 | 10.20 | 2.38 | 1.5 | 98.5 | 0.0 | 1.49 | 1.07 | 0.64 | 0.86 | 3.72 | 13070 | 1620 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 8YX6 | 39648 | 2025-01-19 | 2024-04-02 | 2.9 | 3.57 | 2.95 | 3.4 | 0.007 | 0.55 | 0.0 | 0.04 | 8.16 | 0.00 | 1.968 | 7.32 | 0.00 | 0.3 | 99.7 | 0.0 | 2.41 | 0.64 | 0.83 | 4.03 | 3.4 | 0.005 | 0.60 | 0.0 | 0.04 | 13.47 | 0.00 | 1.590 | 8.49 | 1.68 | 1.2 | 98.8 | 0.0 | 1.90 | 0.52 | 0.57 | 0.81 | 3.57 | 13080 | 1620 | 15 | 0 | 25 | 0 | 0 | logfile |
✔ | 9B8X | 44361 | 2025-01-14 | 2024-04-01 | 3.0 | 3.73 | 2.92 | 3.4 | 0.002 | 0.42 | 0.0 | 0.03 | 9.22 | 0.00 | 2.325 | 4.87 | 0.40 | 2.8 | 97.2 | 0.0 | 2.41 | 0.60 | 0.86 | 2.62 | 3.4 | 0.002 | 0.49 | 0.0 | 0.04 | 12.43 | 0.00 | 2.355 | 3.94 | 0.54 | 2.8 | 97.2 | 0.0 | 2.47 | 0.98 | 0.61 | 0.88 | 2.70 | 7564 | 993 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 9B8Z | 44363 | 2025-01-14 | 2024-04-01 | 3.4 | 4.06 | 3.36 | 3.8 | 0.004 | 0.48 | 0.0 | 0.03 | 10.45 | 0.00 | 2.014 | 3.84 | 0.54 | 4.2 | 95.8 | 0.0 | 2.44 | 0.70 | 0.85 | 2.22 | 3.8 | 0.003 | 0.56 | 0.0 | 0.04 | 14.36 | 0.00 | 2.355 | 5.66 | 2.03 | 2.6 | 97.4 | 0.0 | 2.18 | 0.53 | 0.69 | 0.87 | 1.92 | 7509 | 978 | 2 | 0 | 3 | 0 | 0 | logfile |
✔ | 8YWT | 39644 | 2025-01-19 | 2024-04-01 | 2.8 | 3.14 | 2.88 | 3.2 | 0.013 | 1.93 | 10.0 | 0.09 | 14.34 | 0.02 | 2.228 | 1.55 | 3.36 | 2.1 | 97.6 | 0.3 | -1.45 | 0.50 | 0.68 | 1.86 | 3.2 | 0.006 | 0.69 | 0.0 | 0.04 | 16.18 | 0.01 | 2.570 | 4.54 | 2.01 | 2.7 | 97.3 | 0.0 | 2.00 | 1.02 | 0.67 | 0.87 | 2.32 | 13986 | 1895 | 24 | 0 | 0 | 70 | 0 | logfile |
✔ | 9B91 | 44365 | 2025-01-14 | 2024-04-01 | 3.3 | 4.21 | 3.19 | 3.7 | 0.005 | 0.50 | 0.0 | 0.04 | 11.38 | 0.00 | 2.119 | 6.47 | 0.28 | 3.9 | 96.1 | 0.0 | 1.45 | 0.60 | 0.83 | 2.44 | 3.8 | 0.004 | 0.58 | 0.0 | 0.04 | 13.74 | 0.00 | 2.289 | 6.68 | 2.76 | 3.5 | 96.5 | 0.0 | 2.14 | 0.61 | 0.60 | 0.86 | 2.17 | 7511 | 993 | 2 | 0 | 3 | 0 | 0 | logfile |
✔ | 8YWX | 39646 | 2025-01-14 | 2024-04-01 | 3.4 | 3.68 | 3.38 | 3.6 | 0.009 | 2.56 | 46.0 | 0.13 | 13.58 | 0.01 | 1.898 | 22.95 | 2.43 | 3.4 | 96.6 | 0.0 | -1.55 | 0.67 | 0.73 | 2.13 | 3.6 | 0.005 | 0.84 | 0.0 | 0.05 | 15.08 | 0.01 | 2.295 | 9.84 | 3.18 | 6.0 | 94.0 | 0.0 | -1.52 | 0.74 | 0.69 | 0.76 | 1.30 | 4803 | 623 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 9B8R | 44356 | 2025-01-16 | 2024-03-31 | 3.5 | 3.75 | 3.63 | 3.7 | 0.015 | 1.75 | 3.0 | 0.11 | 15.44 | 0.02 | 2.205 | 9.34 | 2.06 | 4.3 | 94.6 | 1.1 | -1.71 | 0.62 | 0.56 | 1.83 | 3.7 | 0.003 | 0.69 | 0.0 | 0.04 | 17.41 | 0.00 | 2.494 | 9.24 | 2.26 | 2.2 | 97.8 | 0.0 | 1.10 | 1.33 | 0.70 | 0.76 | 1.69 | 9425 | 1119 | 4 | 22 | 1 | 0 | 0 | logfile |
✔ | 9B8Q | 44352 | 2025-01-18 | 2024-03-31 | 3.8 | 4.19 | 4.05 | 4.2 | 0.005 | 0.62 | 0.0 | 0.04 | 16.29 | 0.00 | 2.034 | 10.39 | 3.66 | 4.3 | 95.7 | 0.1 | 2.27 | 0.54 | 0.70 | 0.62 | 4.2 | 0.003 | 0.57 | 0.0 | 0.03 | 17.42 | 0.00 | 2.383 | 7.15 | 5.00 | 2.3 | 97.6 | 0.1 | 3.83 | 0.55 | 0.53 | 0.70 | 0.62 | 12348 | 1886 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 9B8J | 44347 | 2025-01-14 | 2024-03-30 | 3.4 | 2.22 | 3.37 | 2.1 | 0.003 | 0.47 | 0.0 | 0.04 | 11.29 | 0.00 | 2.233 | 4.79 | 0.84 | 4.1 | 95.9 | 0.0 | -0.62 | 0.71 | 0.76 | 3.47 | 2.1 | 0.003 | 0.56 | 0.0 | 0.04 | 14.61 | 0.00 | 2.495 | 5.39 | 2.75 | 3.8 | 96.2 | 0.0 | -0.63 | 0.28 | 0.73 | 0.77 | 2.84 | 7610 | 961 | 10 | 0 | 7 | 0 | 0 | logfile |
✔ | 9B8K | 44348 | 2025-01-19 | 2024-03-30 | 2.96 | 2.30 | 3.10 | 2.1 | 0.011 | 1.26 | 0.0 | 0.06 | 11.29 | 0.00 | 2.047 | 1.95 | 0.13 | 2.4 | 97.3 | 0.3 | 0.90 | 0.71 | 0.65 | 2.50 | 2.0 | 0.003 | 0.68 | 0.0 | 0.04 | 15.28 | 0.01 | 2.350 | 7.34 | 1.48 | 4.2 | 95.7 | 0.1 | -0.01 | 0.68 | 0.71 | 0.66 | 2.06 | 14231 | 1761 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YWA | 39627 | 2025-01-21 | 2024-03-30 | 3.14 | 3.36 | 3.17 | 3.4 | 0.004 | 0.61 | 0.0 | 0.04 | 12.54 | 0.01 | 2.184 | 10.12 | 0.14 | 5.9 | 93.9 | 0.2 | 1.18 | 0.51 | 0.56 | 1.26 | 3.3 | 0.019 | 1.19 | 0.0 | 0.07 | 15.15 | 0.01 | 2.166 | 18.04 | 3.32 | 9.5 | 89.9 | 0.6 | -0.38 | 1.00 | 0.60 | 0.74 | 2.69 | 16619 | 1486 | 11 | 0 | 9 | 0 | 6751 | logfile |
✔ | 8YW4 | 39622 | 2025-01-15 | 2024-03-29 | 3.26 | 3.55 | 3.31 | 3.5 | 0.004 | 0.56 | 0.0 | 0.04 | 18.35 | 0.00 | 2.190 | 7.94 | 0.33 | 5.2 | 94.6 | 0.2 | -0.25 | 0.56 | 0.66 | 0.32 | 3.5 | 0.004 | 0.62 | 0.0 | 0.04 | 18.54 | 0.00 | 2.519 | 6.94 | 3.58 | 5.3 | 94.5 | 0.2 | 0.65 | 1.19 | 0.63 | 0.83 | 1.67 | 8619 | 1082 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YVU | 39614 | 2025-01-13 | 2024-03-29 | 3.9 | 4.30 | 3.86 | 4.2 | 0.003 | 0.71 | 0.0 | 0.04 | 13.76 | 0.00 | 2.277 | 12.74 | 0.00 | 4.1 | 95.5 | 0.4 | 1.38 | 0.50 | 0.63 | 0.56 | 4.2 | 0.003 | 0.71 | 0.0 | 0.04 | 16.38 | 0.00 | 2.599 | 9.64 | 2.83 | 4.3 | 95.5 | 0.2 | 1.55 | 0.51 | 0.53 | 0.66 | -0.19 | 4216 | 530 | 10 | 0 | 2 | 0 | 0 | logfile |
✔ | 8YW5 | 39623 | 2025-01-16 | 2024-03-29 | 2.84 | 3.09 | 2.86 | 3.1 | 0.003 | 0.50 | 0.0 | 0.04 | 11.96 | 0.00 | 2.064 | 4.62 | 3.79 | 4.6 | 95.4 | 0.0 | -0.41 | 0.61 | 0.80 | 3.98 | 3.1 | 0.003 | 0.57 | 0.0 | 0.04 | 14.94 | 0.00 | 2.520 | 4.16 | 3.25 | 4.4 | 95.6 | 0.0 | 1.36 | 0.32 | 0.61 | 0.81 | 3.38 | 8937 | 1157 | 6 | 0 | 0 | 0 | 0 | logfile |