Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YW5	39623	2025-01-16	2024-03-29	2.84	3.09	2.86	3.1	0.003	0.50	0.0	0.04	11.96	0.00	2.064	4.62	3.79	4.6	95.4	0.0	-0.41	0.61	0.80	3.98	3.1	0.003	0.57	0.0	0.04	14.94	0.00	2.520	4.16	3.25	4.4	95.6	0.0	1.36	0.32	0.61	0.81	3.38	8937	1157	6	0	0	0	0	logfile
✔	8YW1	39619	2025-01-21	2024-03-29	3.44	3.70	3.42	3.7	0.007	0.77	2.0	0.05	15.53	0.01	1.384	8.25	0.18	7.7	92.0	0.3	-1.17	0.58	0.76	1.84	3.7	0.004	0.68	0.0	0.05	14.97	0.00	2.212	5.48	3.51	6.9	92.9	0.2	-1.13	0.80	0.60	0.86	2.58	67744	8673	57	0	72	0	0	logfile
✔	9B7Y	44328	2025-01-15	2024-03-28	2.51	3.13	2.67	3.0	0.004	0.58	0.0	0.04	24.66	0.00	2.333	7.45	0.00	1.2	98.8	0.0	3.53	0.79	0.84	3.28	3.0	0.005	0.53	0.0	0.03	24.80	0.00	2.493	6.17	1.17	1.3	98.7	0.0	3.51	0.97	0.79	0.85	3.50	8361	770	6	120	0	0	0	logfile
✔	9EUT	19981	2025-01-17	2024-03-28	2.95	3.19	—	3.1	0.005	0.76	0.0	0.05	12.33	0.01	2.158	3.55	0.56	2.2	97.8	0.0	-0.11	0.71	0.78	2.76	3.2	0.004	0.67	0.0	0.04	15.32	0.00	2.544	7.24	1.13	1.7	98.3	0.0	1.60	1.13	0.71	0.80	2.61	11456	1456	4	0	2	0	0	logfile
✔	9EUY	19989	2025-01-15	2024-03-28	2.95	3.23	3.00	3.3	0.003	0.74	0.0	0.05	11.99	0.01	2.311	3.09	0.24	1.8	98.2	0.0	0.41	0.69	0.83	3.53	3.3	0.002	0.57	0.0	0.04	16.22	0.00	2.477	5.28	2.27	1.5	98.5	0.0	1.80	0.64	0.68	0.83	2.60	7846	984	4	0	2	0	0	logfile
✔	8YUU	39583	2025-01-15	2024-03-27	2.7	2.89	2.72	2.9	0.005	0.83	0.0	0.06	10.47	0.00	2.076	10.31	0.00	3.5	96.5	0.0	1.48	0.68	0.83	4.11	2.9	0.004	0.63	0.0	0.04	14.37	0.00	2.539	4.51	1.84	2.7	97.3	0.0	1.81	0.53	0.66	0.83	3.56	9037	1145	6	0	2	0	0	logfile
✔	9B78	44303	2025-01-18	2024-03-27	2.59	2.74	2.62	2.8	0.002	0.51	0.0	0.05	11.21	0.00	2.252	4.07	0.00	1.2	98.8	0.0	0.40	0.65	0.80	2.80	2.8	0.005	0.59	0.0	0.05	15.00	0.00	2.527	4.99	3.14	1.4	98.6	0.0	0.89	1.26	0.66	0.83	2.77	11814	1566	6	0	0	0	0	logfile
✔	9EUP	19979	2025-01-20	2024-03-27	3.0	3.45	3.02	3.4	0.010	0.82	0.0	0.05	13.77	0.01	2.130	5.45	0.12	3.3	96.7	0.0	-1.46	0.67	0.83	4.18	3.4	0.004	0.56	0.0	0.04	14.20	0.01	2.122	4.85	1.11	3.3	96.7	0.0	0.59	0.35	0.56	0.77	3.32	14966	965	4	0	6	0	7364	logfile
✔	9B79	44304	2025-01-15	2024-03-27	2.71	2.95	2.77	3.0	0.003	0.60	0.0	0.05	12.08	0.00	2.229	6.42	0.00	2.4	97.6	0.0	0.94	0.58	0.72	2.58	3.0	0.005	0.72	0.0	0.05	15.57	0.00	2.441	7.68	3.54	2.4	97.6	0.0	1.08	1.76	0.63	0.79	2.22	7876	1044	4	0	0	0	0	logfile
✔	9B73	44299	2025-01-15	2024-03-27	1.96	2.85	2.08	2.6	0.004	0.50	0.0	0.05	14.71	0.01	1.936	6.02	0.36	0.0	100.0	0.0	0.18	0.76	0.90	5.56	2.6	0.003	0.52	0.0	0.04	13.78	0.00	2.011	4.94	0.95	0.9	99.1	0.0	0.82	1.22	0.76	0.90	4.44	8016	978	9	0	15	66	0	logfile
✔	8YUT	39582	2025-01-15	2024-03-27	2.7	2.92	2.83	2.9	0.008	0.81	0.0	0.06	10.59	0.00	2.231	4.63	0.00	1.9	98.1	0.0	1.32	0.63	0.77	3.26	2.9	0.002	0.54	0.0	0.04	14.49	0.00	2.414	4.02	1.68	2.0	98.0	0.0	2.17	0.62	0.61	0.78	2.67	8229	1041	6	0	2	0	0	logfile
✔	9ETM	19944	2025-01-14	2024-03-26	3.35	3.68	3.42	3.7	0.003	0.64	0.0	0.04	17.42	0.01	2.377	2.14	0.00	2.8	97.2	0.0	-0.09	0.58	0.75	2.42	3.7	0.004	0.80	0.0	0.05	17.44	0.00	2.442	9.91	3.23	2.5	97.5	0.0	1.24	1.34	0.57	0.75	2.34	7404	928	15	0	5	0	0	logfile
✔	9B6D	44255	2025-01-17	2024-03-25	3.3	3.65	3.19	3.6	0.005	0.82	0.0	0.06	12.33	0.00	2.027	6.39	0.49	3.1	96.9	0.0	1.86	0.72	0.81	2.12	3.5	0.004	0.52	0.0	0.04	12.97	0.00	2.248	4.07	1.35	4.4	95.6	0.0	1.94	1.24	0.73	0.84	2.38	54584	3732	8	0	20	0	25920	logfile
✔	9B6G	44258	2025-01-17	2024-03-25	2.81	3.36	2.89	3.3	0.007	0.82	0.0	0.06	11.77	0.00	2.108	5.44	0.15	2.6	97.4	0.0	2.73	0.64	0.74	3.07	3.2	0.003	0.54	0.0	0.04	13.70	0.00	2.296	5.86	1.06	3.7	96.2	0.1	2.25	0.63	0.66	0.78	2.56	54152	3660	8	0	28	0	25668	logfile
✔	9B6E	44256	2025-01-17	2024-03-25	2.91	3.48	2.86	3.3	0.005	0.77	0.0	0.05	12.59	0.00	1.988	6.27	0.15	4.5	95.5	0.0	1.79	0.68	0.77	2.75	3.3	0.004	0.56	0.0	0.04	14.05	0.00	2.384	5.99	2.09	5.0	94.9	0.0	1.63	0.65	0.69	0.79	2.84	55244	3716	8	0	20	0	26380	logfile
✔	9B6H	44259	2025-01-17	2024-03-25	2.76	3.38	2.76	3.2	0.007	0.87	0.0	0.05	14.01	0.00	1.507	8.91	0.44	3.2	96.8	0.0	1.49	0.69	0.77	2.65	3.2	0.002	0.51	0.0	0.04	14.07	0.00	2.327	4.78	0.87	4.0	95.9	0.1	2.43	0.53	0.69	0.78	2.54	55692	3736	8	0	24	0	26696	logfile
✔	9ES9	19940	2025-01-21	2024-03-25	2.33	3.04	2.37	2.8	0.003	0.53	0.0	0.04	12.29	0.00	1.994	3.25	0.61	3.2	96.8	0.0	0.37	0.77	0.88	4.87	2.9	0.003	0.61	0.0	0.04	14.82	0.00	2.545	2.58	1.15	3.0	97.0	0.0	1.83	1.26	0.76	0.88	3.45	16450	1974	40	0	24	206	0	logfile
✔	9B6i	44260	2025-01-17	2024-03-25	3.26	3.70	3.19	3.6	0.005	0.79	0.0	0.05	12.46	0.00	2.031	9.07	0.17	2.4	97.6	0.0	1.86	0.67	0.80	1.94	3.6	0.004	0.51	0.0	0.04	13.66	0.00	2.206	5.96	1.29	3.9	96.1	0.0	1.45	0.41	0.63	0.76	2.03	55320	3424	8	0	24	0	27072	logfile
✔	9ES7	19938	2025-01-21	2024-03-25	1.94	2.49	1.96	2.2	0.003	0.51	0.0	0.04	12.59	0.00	1.967	1.81	0.37	1.6	98.4	0.0	1.66	0.83	0.91	5.64	2.2	0.003	0.62	0.0	0.04	14.66	0.00	2.451	2.36	0.85	2.0	98.0	0.0	2.34	0.39	0.80	0.91	4.26	16413	1950	46	0	22	329	0	logfile
✔	8YT8	39568	2025-01-21	2024-03-25	3.5	3.97	3.51	3.8	0.004	0.69	0.0	0.05	19.50	0.00	2.129	9.74	0.24	5.9	93.9	0.1	0.12	0.74	0.81	1.48	3.8	0.003	0.64	0.0	0.04	16.68	0.00	2.390	7.04	3.33	5.4	94.5	0.1	0.28	0.28	0.73	0.79	1.70	16309	2092	24	0	34	0	0	logfile

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