Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9ERM	19926	2025-01-13	2024-03-24	2.3	2.49	2.28	2.5	0.009	1.43	0.0	0.09	11.15	0.01	2.641	0.85	3.03	4.1	95.9	0.0	-2.04	0.45	0.94	7.10	2.5	0.003	0.67	0.0	0.05	16.50	0.00	2.637	3.25	2.42	2.5	97.5	0.0	-1.25	0.58	0.44	0.93	6.31	2870	375	5	0	0	0	0	logfile
✔	9ERo	19928	2025-01-14	2024-03-24	2.9	3.15	2.93	3.1	0.010	1.67	0.0	0.09	13.22	0.01	2.427	3.65	5.26	5.5	94.5	0.0	-4.12	0.48	0.85	4.87	3.1	0.003	0.74	0.0	0.05	14.75	0.00	2.599	5.09	2.26	0.5	99.5	0.0	-1.63	2.51	0.43	0.82	5.39	5775	750	10	0	0	0	0	logfile
✔	9ERN	19927	2025-01-13	2024-03-24	2.5	2.72	2.52	2.6	0.009	1.38	0.0	0.08	11.58	0.01	2.539	0.00	3.03	2.7	97.3	0.0	-2.81	0.43	0.92	6.38	2.7	0.003	0.59	0.0	0.05	15.91	0.00	2.598	2.28	0.76	1.1	98.9	0.0	-1.59	0.98	0.43	0.91	6.10	3444	450	6	0	0	0	0	logfile
✔	9B69	44250	2025-01-23	2024-03-23	3.69	3.29	3.52	3.3	0.003	0.49	0.0	0.04	16.28	0.00	2.177	5.70	0.36	3.0	97.0	0.0	0.73	0.67	0.80	3.44	3.3	0.004	0.56	0.0	0.04	15.31	0.00	2.391	5.89	3.46	3.6	96.4	0.0	0.32	0.90	0.69	0.82	3.59	11370	1496	9	0	11	0	0	logfile
✔	9B60	44233	2025-01-17	2024-03-23	2.57	2.37	2.54	2.6	0.002	0.45	0.0	0.03	16.62	0.00	2.245	4.52	1.66	3.0	97.0	0.0	3.66	0.54	0.78	3.02	2.6	0.004	0.53	0.0	0.04	16.77	0.00	2.516	4.62	2.86	3.3	96.7	0.0	3.48	0.86	0.55	0.81	3.11	10461	1348	8	0	0	0	0	logfile
✔	9B62	44235	2025-01-22	2024-03-23	2.9	3.27	—	3.1	0.003	0.44	0.0	0.04	10.59	0.00	1.851	4.24	0.62	3.5	96.5	0.0	1.28	0.81	0.84	3.78	3.1	0.003	0.55	0.0	0.04	14.38	0.00	1.853	4.16	1.61	2.6	97.4	0.0	1.29	2.33	0.82	0.87	3.06	19287	2414	9	0	4	0	0	logfile
✔	9B68	44249	2025-01-23	2024-03-23	3.6	3.60	3.54	3.6	0.003	0.61	0.0	0.04	16.03	0.00	2.203	6.44	0.27	2.9	97.1	0.0	-0.07	0.73	0.82	3.47	3.6	0.005	0.62	0.0	0.04	15.13	0.00	2.449	5.98	3.11	4.6	95.4	0.0	0.15	0.40	0.75	0.85	2.95	11364	1496	9	0	11	0	0	logfile
✔	9B63	44244	2025-01-17	2024-03-23	2.76	2.46	2.75	2.8	0.002	0.47	0.0	0.03	17.29	0.00	2.238	5.01	2.22	3.5	96.5	0.0	3.41	0.55	0.78	2.99	2.8	0.003	0.48	0.0	0.04	17.18	0.00	2.574	5.63	3.05	3.3	96.7	0.0	3.88	0.29	0.53	0.79	2.99	10461	1348	8	0	0	0	0	logfile
✔	9B61	44234	2025-01-22	2024-03-23	2.81	3.15	2.76	3.1	0.005	0.80	0.0	0.04	17.30	0.00	2.154	11.12	3.10	2.7	97.3	0.0	1.40	0.63	0.78	1.89	3.1	0.003	0.69	0.0	0.04	17.25	0.00	2.504	9.78	2.33	2.5	97.5	0.0	1.60	0.41	0.64	0.82	1.96	18447	2384	8	0	0	0	0	logfile
✔	9B67	44248	2025-01-22	2024-03-23	3.39	2.74	3.34	3.3	0.003	0.48	0.0	0.04	16.88	0.00	2.168	6.31	0.26	2.3	97.7	0.0	1.73	0.59	0.82	2.61	3.3	0.002	0.50	0.0	0.04	17.10	0.00	2.550	5.58	1.85	2.1	97.9	0.0	2.39	0.88	0.58	0.80	2.24	18435	2372	8	0	0	0	0	logfile
✔	9B5Z	44232	2025-01-22	2024-03-23	2.71	2.93	2.67	2.9	0.003	0.56	0.0	0.04	17.45	0.00	2.227	8.03	2.18	2.6	97.3	0.0	1.82	0.70	0.86	2.45	2.9	0.003	0.59	0.0	0.04	17.47	0.00	2.473	7.49	2.79	2.5	97.5	0.0	2.09	0.93	0.68	0.86	2.47	18680	2406	8	0	0	0	0	logfile
✔	9B6A	44251	2025-01-22	2024-03-23	3.35	2.74	3.31	3.1	0.003	0.50	0.0	0.04	16.79	0.00	2.196	7.53	0.26	2.1	97.9	0.0	2.10	0.57	0.79	2.33	3.1	0.002	0.49	0.0	0.04	16.99	0.00	2.448	7.23	2.16	2.4	97.6	0.0	2.43	0.32	0.57	0.79	2.39	18493	2378	8	0	0	0	0	logfile
✔	9B5L	44216	2025-01-17	2024-03-22	3.3	4.02	3.61	3.8	0.004	0.49	0.0	0.04	10.25	0.00	1.933	2.48	1.42	2.2	97.8	0.0	1.42	0.80	0.81	2.28	3.8	0.002	0.56	0.0	0.04	13.99	0.00	2.468	5.30	1.15	2.0	98.0	0.0	1.39	1.65	0.82	0.84	1.85	10117	1283	6	0	2	0	0	logfile
✔	9B5M	44217	2025-01-16	2024-03-22	2.79	3.25	2.83	3.1	0.002	0.45	0.0	0.04	9.70	0.00	2.034	1.18	0.91	2.0	98.0	0.0	1.13	0.67	0.75	3.99	3.1	0.002	0.50	0.0	0.04	13.17	0.00	2.026	2.59	1.11	1.7	98.3	0.0	1.24	1.55	0.68	0.77	3.74	8935	1133	5	0	4	0	0	logfile
✔	9B5Q	44221	2025-01-16	2024-03-22	2.95	3.41	2.98	3.3	0.003	0.46	0.0	0.04	9.51	0.00	2.007	1.41	1.31	2.0	98.0	0.0	1.02	0.76	0.83	3.93	3.3	0.003	0.51	0.0	0.04	12.82	0.00	2.062	3.32	1.21	2.0	98.0	0.0	1.30	1.17	0.78	0.86	3.24	8935	1133	5	0	4	0	0	logfile
✔	9B5C	44207	2025-01-16	2024-03-22	2.5	3.00	2.51	2.8	0.003	0.48	0.0	0.04	10.21	0.00	2.036	1.37	0.66	1.7	98.3	0.0	1.33	0.70	0.80	4.37	2.8	0.003	0.50	0.0	0.04	13.51	0.00	2.013	2.74	1.89	1.3	98.7	0.0	1.55	0.26	0.72	0.82	3.75	9536	1209	6	0	4	0	0	logfile
✔	9B5T	44224	2025-01-16	2024-03-22	3.16	3.62	3.24	3.5	0.003	0.45	0.0	0.04	9.54	0.00	2.024	1.58	0.91	1.9	98.1	0.0	1.13	0.74	0.82	2.66	3.5	0.003	0.53	0.0	0.04	13.16	0.00	1.901	4.96	2.52	1.9	98.1	0.0	0.94	1.19	0.78	0.85	2.49	8935	1133	5	0	4	0	0	logfile
✔	9B5i	44213	2025-01-16	2024-03-22	2.7	3.19	2.75	3.0	0.003	0.49	0.0	0.04	9.58	0.00	1.989	1.16	0.85	1.8	98.2	0.0	1.34	0.68	0.77	4.07	3.0	0.002	0.47	0.0	0.04	13.06	0.00	2.010	3.11	1.41	1.5	98.5	0.0	1.54	1.10	0.67	0.77	3.37	9536	1209	7	0	5	0	0	logfile
✔	9B5S	44223	2025-01-16	2024-03-22	2.96	3.46	3.02	3.3	0.003	0.46	0.0	0.04	9.82	0.00	1.986	1.18	1.21	2.0	98.0	0.0	1.20	0.79	0.85	3.45	3.3	0.003	0.54	0.0	0.04	13.47	0.00	1.994	3.83	1.51	2.2	97.8	0.0	1.18	1.16	0.77	0.84	3.05	8935	1133	5	0	4	0	0	logfile
✔	9B5F	44210	2025-01-16	2024-03-22	2.78	3.21	2.81	3.1	0.004	0.47	0.0	0.04	9.87	0.00	2.027	1.58	0.94	2.1	97.9	0.0	1.49	0.66	0.78	3.78	3.1	0.003	0.51	0.0	0.04	13.11	0.00	1.971	2.74	1.41	1.9	98.1	0.0	1.49	0.26	0.66	0.78	3.40	9536	1209	6	0	4	0	0	logfile

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