Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9B5Q	44221	2025-01-16	2024-03-22	2.95	3.41	2.98	3.3	0.003	0.46	0.0	0.04	9.51	0.00	2.007	1.41	1.31	2.0	98.0	0.0	1.02	0.76	0.83	3.93	3.3	0.003	0.51	0.0	0.04	12.82	0.00	2.062	3.32	1.21	2.0	98.0	0.0	1.30	1.17	0.78	0.86	3.24	8935	1133	5	0	4	0	0	logfile
✔	9B5M	44217	2025-01-16	2024-03-22	2.79	3.25	2.83	3.1	0.002	0.45	0.0	0.04	9.70	0.00	2.034	1.18	0.91	2.0	98.0	0.0	1.13	0.67	0.75	3.99	3.1	0.002	0.50	0.0	0.04	13.17	0.00	2.026	2.59	1.11	1.7	98.3	0.0	1.24	1.55	0.68	0.77	3.74	8935	1133	5	0	4	0	0	logfile
✔	9B5D	44208	2025-01-17	2024-03-22	2.8	3.27	2.87	3.2	0.004	0.47	0.0	0.04	9.74	0.00	2.012	1.39	1.06	1.5	98.5	0.0	1.46	0.73	0.79	3.66	3.2	0.003	0.52	0.0	0.04	13.41	0.00	1.989	2.82	1.50	1.3	98.7	0.0	1.57	0.40	0.77	0.85	2.98	10128	1283	6	0	4	0	0	logfile
✔	9B5G	44211	2025-01-16	2024-03-22	2.67	3.11	2.69	3.0	0.003	0.47	0.0	0.04	10.03	0.00	2.032	1.42	0.94	2.0	98.0	0.0	1.47	0.69	0.80	4.23	3.0	0.002	0.50	0.0	0.04	13.55	0.00	2.024	3.21	1.70	1.6	98.4	0.0	1.50	2.40	0.77	0.87	3.41	9536	1209	6	0	4	0	0	logfile
✔	8YRG	39542	2025-01-15	2024-03-21	3.14	2.21	3.09	2.0	0.007	0.69	0.0	0.05	12.79	0.00	2.093	9.25	0.00	7.4	92.6	0.0	-0.87	0.74	0.75	3.71	1.9	0.002	0.59	0.0	0.04	14.86	0.00	2.544	6.14	2.17	3.5	96.5	0.0	0.81	0.94	0.74	0.76	2.70	7977	1079	6	0	1	0	0	logfile
✔	8YRJ	39543	2025-01-13	2024-03-21	3.87	4.13	3.94	4.1	0.003	0.54	0.0	0.04	19.29	0.00	2.240	4.49	0.00	3.6	96.0	0.4	2.39	0.49	0.67	1.42	4.1	0.004	0.87	0.0	0.05	17.06	0.00	2.498	13.62	3.99	5.2	94.2	0.7	1.23	1.64	0.53	0.74	0.90	3748	454	7	0	9	0	0	logfile
✔	9B4F	44179	2025-01-14	2024-03-20	3.27	3.55	3.32	3.6	0.003	0.57	2.0	0.04	12.09	0.00	2.032	7.44	1.68	9.1	90.9	0.0	-2.07	0.58	0.80	3.31	3.6	0.002	0.52	0.0	0.04	14.47	0.00	2.583	4.48	1.51	7.1	92.9	0.0	1.37	0.84	0.51	0.78	2.94	5612	670	4	0	2	0	0	logfile
✔	9B41	44164	2025-01-17	2024-03-20	3.2	3.57	3.20	3.5	0.004	0.79	0.0	0.05	17.58	0.01	2.202	6.83	0.89	5.7	94.3	0.0	-0.45	0.75	0.86	2.02	3.5	0.003	0.60	0.0	0.04	18.04	0.00	2.485	7.93	3.23	5.6	94.4	0.0	0.43	1.38	0.75	0.86	1.72	55608	7080	24	0	0	0	0	logfile
✔	9B3T	44155	2025-01-21	2024-03-20	3.53	4.31	3.67	4.1	0.003	0.62	0.0	0.04	18.61	0.00	2.215	11.95	2.81	3.3	96.7	0.0	0.30	0.83	0.76	1.34	4.1	0.003	0.73	0.0	0.04	18.40	0.00	2.286	10.34	3.58	3.1	96.9	0.0	2.26	1.48	0.84	0.82	1.03	16389	2049	8	0	0	0	0	logfile
✔	8YQX	39509	2025-01-14	2024-03-20	2.97	3.17	3.00	3.2	0.003	0.52	0.0	0.04	16.27	0.00	2.198	8.03	0.72	3.7	96.3	0.0	-0.18	0.56	0.85	2.68	3.2	0.005	0.60	0.0	0.05	16.99	0.00	2.451	6.91	3.33	4.2	95.8	0.0	-0.15	0.31	0.55	0.86	2.39	6167	766	3	0	0	0	0	logfile
✔	8YR0	39532	2025-01-25	2024-03-20	3.06	3.79	3.10	3.5	0.004	0.67	0.0	0.04	18.96	0.01	2.200	5.40	0.13	2.2	97.8	0.0	0.91	0.78	0.84	1.02	3.5	0.002	0.54	0.0	0.04	16.18	0.00	2.459	4.31	2.56	2.2	97.8	0.0	1.89	0.58	0.80	0.89	1.28	23128	3084	6	0	6	0	0	logfile
✔	9B3i	44141	2025-01-20	2024-03-19	2.88	3.47	—	3.0	0.006	0.78	0.0	0.05	13.83	0.00	1.769	10.80	0.30	1.8	98.2	0.0	0.61	0.82	0.73	2.51	3.1	0.004	0.82	0.0	0.04	15.88	0.00	1.862	11.64	1.97	1.7	98.3	0.0	1.24	0.99	0.81	0.80	2.13	14951	1854	7	0	2	0	0	logfile
✔	9EPR	19884	2025-01-14	2024-03-19	4.9	4.87	4.71	4.7	0.004	0.93	0.0	0.05	17.43	0.01	2.296	13.12	14.42	7.8	91.8	0.5	-3.94	0.67	0.73	—	4.7	0.003	0.73	0.0	0.04	12.72	0.00	2.502	12.91	0.00	5.7	94.3	0.0	-1.13	3.80	0.66	0.72	—	7046	890	5	0	1	0	0	logfile
✔	9B3D	44135	2025-01-25	2024-03-19	3.41	4.16	3.57	3.8	0.005	0.88	0.0	0.05	15.33	0.01	2.099	1.98	0.00	3.7	96.2	0.1	-3.30	0.79	0.76	1.16	3.8	0.003	0.72	0.0	0.04	15.98	0.00	1.883	9.39	0.98	3.5	96.5	0.1	0.50	0.79	0.80	0.80	1.22	23621	2967	14	0	12	0	0	logfile
✔	9B3M	44145	2025-01-13	2024-03-19	3.21	3.37	3.16	3.4	0.004	0.76	1.0	0.04	16.77	0.00	2.215	12.22	2.33	1.1	98.9	0.0	2.89	0.61	0.83	1.19	3.4	0.003	0.62	0.0	0.04	17.01	0.00	2.568	10.91	6.61	1.4	98.6	0.0	3.21	0.28	0.61	0.84	1.28	2669	365	1	0	0	0	0	logfile
✔	9EPo	19881	2025-01-14	2024-03-19	1.9	2.08	1.97	2.1	0.005	0.86	0.0	0.06	10.14	0.01	2.140	1.04	0.00	0.3	99.7	0.0	1.04	0.41	0.58	5.97	2.1	0.004	0.63	0.0	0.04	15.94	0.00	2.561	4.23	2.55	0.6	99.4	0.0	2.18	1.64	0.67	0.83	5.40	5860	692	6	0	6	94	0	logfile
✔	9B3L	44144	2025-01-13	2024-03-19	3.25	3.40	3.16	3.4	0.003	0.54	0.0	0.04	15.96	0.00	2.274	9.17	0.40	2.6	97.4	0.0	2.14	0.61	0.84	1.47	3.4	0.004	0.66	0.0	0.04	16.28	0.00	2.550	9.36	6.32	2.3	97.7	0.0	2.24	0.41	0.60	0.84	1.68	2623	358	1	0	0	0	0	logfile
✔	8YQQ	39502	2025-01-14	2024-03-19	3.95	2.96	3.87	3.4	0.008	1.28	0.0	0.07	17.14	0.04	1.447	16.88	8.03	9.9	87.3	2.8	-3.12	0.87	0.83	2.44	3.4	0.003	0.71	0.0	0.05	15.68	0.00	2.016	7.39	2.79	5.9	94.1	0.0	-1.43	0.96	0.88	0.84	2.57	5141	649	4	0	6	0	0	logfile
✔	9B3P	44148	2025-01-17	2024-03-19	3.0	2.71	3.02	3.0	0.002	0.37	0.0	0.03	24.09	0.00	2.292	3.54	0.16	4.6	94.9	0.6	-5.86	0.70	0.70	1.67	2.9	0.005	0.64	0.0	0.04	27.70	0.00	2.521	5.14	2.30	3.5	96.5	0.0	1.23	0.99	0.81	0.86	3.74	11067	738	10	256	0	0	0	logfile
✔	9B35	44128	2025-01-19	2024-03-18	3.4	3.76	3.53	3.7	0.008	1.24	0.0	0.06	10.75	0.01	2.030	5.09	0.65	11.7	87.4	0.9	-5.51	0.68	0.81	3.08	3.7	0.005	0.78	0.0	0.04	14.50	0.01	2.468	10.33	1.94	11.3	88.6	0.2	-0.93	0.81	0.67	0.82	1.98	14132	1780	8	0	0	0	0	logfile

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