Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YPU	39494	2025-01-24	2024-03-18	2.97	3.16	2.96	3.1	0.006	0.68	3.0	0.05	16.03	0.01	2.065	9.57	0.25	2.7	97.3	0.0	-0.23	0.77	0.86	3.78	3.1	0.004	0.71	1.0	0.04	16.54	0.00	2.532	5.69	2.87	3.1	96.9	0.0	0.12	0.22	0.75	0.88	3.54	22476	2820	4	0	0	0	0	logfile
✔	9B33	44124	2025-01-13	2024-03-18	4.07	4.25	4.00	4.2	0.007	1.56	0.0	0.08	13.12	0.01	2.141	8.98	0.49	23.2	75.3	1.5	-6.09	0.63	0.62	—	4.1	0.004	1.02	0.0	0.06	12.59	0.01	1.977	22.31	0.00	22.6	76.4	1.1	-4.71	1.20	0.68	0.68	—	3619	474	4	0	4	0	0	logfile
✔	8YPT	39493	2025-01-25	2024-03-18	3.05	3.26	3.06	3.3	0.003	0.59	0.0	0.05	15.68	0.00	2.167	7.27	0.80	1.9	98.1	0.0	0.24	0.68	0.84	3.33	3.3	0.003	0.52	0.0	0.04	16.21	0.00	2.536	4.47	3.23	2.4	97.6	0.0	0.32	1.21	0.72	0.87	3.52	23068	2894	5	0	0	0	0	logfile
✔	9B34	44125	2025-01-13	2024-03-18	3.58	3.87	3.58	3.9	0.007	1.47	0.0	0.08	12.86	0.01	2.121	8.00	0.49	23.6	74.5	1.9	-5.95	0.68	0.68	1.73	3.8	0.004	1.03	0.0	0.05	16.69	0.01	2.096	16.14	3.21	22.6	76.6	0.9	-4.24	2.02	0.70	0.71	0.92	3619	474	4	0	4	0	0	logfile
✔	9B35	44128	2025-01-19	2024-03-18	3.4	3.76	3.53	3.7	0.008	1.24	0.0	0.06	10.75	0.01	2.030	5.09	0.65	11.7	87.4	0.9	-5.51	0.68	0.81	3.08	3.7	0.005	0.78	0.0	0.04	14.50	0.01	2.468	10.33	1.94	11.3	88.6	0.2	-0.93	0.81	0.67	0.82	1.98	14132	1780	8	0	0	0	0	logfile
✔	9B2X	44117	2025-01-17	2024-03-17	3.28	3.63	3.33	3.6	0.003	0.58	0.0	0.05	15.74	0.00	2.029	3.98	0.47	6.5	93.5	0.0	-1.06	0.71	0.81	3.26	3.6	0.004	0.60	0.0	0.05	14.87	0.00	2.520	3.47	0.71	7.9	92.1	0.0	-0.72	1.39	0.73	0.84	2.98	10860	1386	6	0	6	0	0	logfile
✔	9B2M	44112	2025-01-21	2024-03-15	3.09	3.32	3.10	3.3	0.023	1.91	3.0	0.12	9.98	0.01	1.499	3.03	0.26	2.1	97.9	0.0	0.77	0.70	0.70	2.48	3.3	0.005	0.81	0.0	0.05	14.80	0.00	2.466	16.10	2.79	5.1	94.9	0.0	-0.18	1.48	0.71	0.74	2.09	17412	2187	15	0	15	0	0	logfile
✔	9EoE	19852	2025-01-13	2024-03-14	2.3	2.15	2.26	2.2	0.009	1.54	2.0	0.10	14.88	0.01	2.621	4.14	4.41	8.0	92.0	0.0	-3.08	0.21	0.80	6.35	2.2	0.005	0.82	0.0	0.06	16.92	0.01	2.631	1.68	4.41	4.0	96.0	0.0	-2.35	1.27	0.27	0.84	7.38	595	77	1	0	0	0	0	logfile
✔	9B23	44095	2025-01-14	2024-03-14	3.2	4.35	3.32	3.8	0.003	0.59	0.0	0.04	14.70	0.01	1.981	10.54	0.39	2.8	97.2	0.0	0.97	0.81	0.69	0.94	3.8	0.003	0.68	0.0	0.04	16.83	0.00	2.481	9.57	1.35	2.5	97.5	0.0	1.26	1.31	0.82	0.71	1.29	4670	568	2	0	0	0	0	logfile
✔	9EoG	19854	2025-01-13	2024-03-14	3.0	3.00	2.79	3.2	0.009	1.63	6.0	0.10	12.85	0.01	2.445	5.03	4.48	6.7	93.3	0.0	-4.10	0.39	0.90	4.14	3.2	0.006	0.82	0.0	0.05	15.30	0.00	2.534	9.36	1.24	5.8	94.2	0.0	-1.89	1.09	0.37	0.88	3.53	3522	462	6	0	0	0	0	logfile
✔	8YoY	39460	2025-01-14	2024-03-14	3.21	4.39	3.38	4.0	0.003	0.50	0.0	0.04	14.42	0.00	2.189	7.69	0.00	3.7	96.3	0.0	-1.35	0.72	0.43	0.88	3.9	0.003	0.78	0.0	0.05	16.13	0.00	2.505	18.32	4.00	5.4	94.5	0.2	-1.18	1.49	0.85	0.74	0.44	5081	653	2	0	0	0	0	logfile
✔	9EoH	19855	2025-01-13	2024-03-14	2.8	3.08	2.71	3.1	0.009	1.45	6.0	0.09	11.76	0.01	2.465	4.31	0.00	9.7	90.3	0.0	-3.95	0.48	0.89	6.19	3.1	0.005	0.81	0.0	0.05	17.65	0.00	2.547	6.32	4.87	5.3	94.7	0.0	-2.78	1.36	0.42	0.88	5.91	3414	444	6	0	0	0	0	logfile
✔	9Eo7	19846	2025-01-13	2024-03-14	2.8	2.99	2.48	3.0	0.009	1.59	1.0	0.10	12.22	0.01	2.583	3.31	1.47	6.7	93.3	0.0	-4.16	0.28	0.88	5.19	3.0	0.002	0.54	0.0	0.05	13.60	0.01	2.543	6.71	2.94	1.3	98.7	0.0	-1.78	0.74	0.27	0.87	3.36	595	77	1	0	0	0	0	logfile
✔	9Eo9	19849	2025-01-13	2024-03-14	3.3	3.30	3.20	3.4	0.016	1.57	0.0	0.10	14.49	0.01	2.638	3.72	5.88	7.3	92.7	0.0	-4.62	0.25	0.84	3.70	3.5	0.006	0.87	0.0	0.05	15.00	0.00	2.494	4.14	2.94	6.0	94.0	0.0	-2.85	1.24	0.29	0.79	3.58	1190	154	2	0	0	0	0	logfile
✔	9B27	44099	2025-01-25	2024-03-14	3.51	4.14	3.65	3.8	0.004	0.82	0.0	0.05	15.44	0.01	1.519	2.38	0.23	3.7	96.1	0.1	-3.27	0.79	0.79	1.00	3.7	0.004	0.69	0.0	0.04	15.99	0.00	1.888	6.75	0.81	4.1	95.9	0.0	0.91	1.67	0.80	0.80	0.87	23828	2991	14	0	12	0	0	logfile
✔	9Eo4	19845	2025-01-16	2024-03-14	2.66	2.89	2.68	3.0	0.006	0.72	0.0	0.04	15.98	0.02	1.915	5.57	0.87	1.8	98.2	0.0	1.45	0.49	0.83	4.04	3.0	0.003	0.49	0.0	0.04	14.93	0.00	2.082	4.90	0.66	1.3	98.7	0.0	1.60	1.09	0.51	0.85	4.48	8781	546	2	0	7	4	4322	logfile
✔	9B2C	44103	2025-01-13	2024-03-14	3.0	3.28	3.00	3.4	0.011	1.61	7.0	0.09	13.71	0.02	2.392	3.17	3.41	2.6	96.6	0.8	-0.08	0.71	0.78	5.61	3.4	0.004	0.64	0.0	0.04	13.44	0.00	2.578	5.52	2.84	2.9	96.9	0.2	-0.26	1.10	0.61	0.76	4.99	4596	657	6	0	4	0	0	logfile
✔	9B1o	44086	2025-01-13	2024-03-13	3.1	3.49	3.20	3.4	0.004	0.76	0.0	0.04	11.21	0.01	2.424	0.63	0.00	1.6	98.4	0.0	-0.17	0.57	0.83	3.90	3.4	0.003	0.59	0.0	0.04	13.58	0.00	2.520	4.26	0.96	1.8	98.2	0.0	2.34	0.53	0.56	0.83	3.27	3945	515	2	0	2	0	0	logfile
✔	9B1J	44081	2025-01-13	2024-03-13	3.0	3.35	3.08	3.3	0.006	0.83	0.0	0.04	11.22	0.01	2.389	1.00	0.00	1.2	98.8	0.0	0.31	0.52	0.79	4.08	3.3	0.003	0.61	0.0	0.04	14.15	0.00	2.520	4.25	1.68	2.1	97.9	0.0	2.26	0.78	0.54	0.79	2.77	3953	515	2	0	3	0	0	logfile
✔	9B1N	44085	2025-01-13	2024-03-13	3.1	3.52	3.27	3.5	0.005	0.79	0.0	0.04	11.09	0.01	2.454	0.75	0.00	1.6	98.4	0.0	-0.18	0.58	0.83	3.67	3.5	0.003	0.62	0.0	0.04	12.95	0.00	2.545	3.87	0.24	1.4	98.6	0.0	2.60	0.49	0.63	0.84	2.85	3954	515	2	0	2	0	0	logfile

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