Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9B1o	44086	2025-01-13	2024-03-13	3.1	3.49	3.20	3.4	0.004	0.76	0.0	0.04	11.21	0.01	2.424	0.63	0.00	1.6	98.4	0.0	-0.17	0.57	0.83	3.90	3.4	0.003	0.59	0.0	0.04	13.58	0.00	2.520	4.26	0.96	1.8	98.2	0.0	2.34	0.53	0.56	0.83	3.27	3945	515	2	0	2	0	0	logfile
✔	9B1E	44075	2025-01-14	2024-03-13	4.4	2.66	—	2.4	0.003	0.97	0.0	0.08	19.82	0.01	1.929	8.24	0.00	2.8	97.2	0.0	0.62	0.69	0.67	—	2.0	0.003	0.72	0.0	0.04	20.03	0.00	1.884	12.58	0.00	3.0	97.0	0.0	0.24	0.76	0.69	0.67	—	49842	5333	30	362	20	0	0	logfile
✔	9B1N	44085	2025-01-13	2024-03-13	3.1	3.52	3.27	3.5	0.005	0.79	0.0	0.04	11.09	0.01	2.454	0.75	0.00	1.6	98.4	0.0	-0.18	0.58	0.83	3.67	3.5	0.003	0.62	0.0	0.04	12.95	0.00	2.545	3.87	0.24	1.4	98.6	0.0	2.60	0.49	0.63	0.84	2.85	3954	515	2	0	2	0	0	logfile
✔	9B1J	44081	2025-01-13	2024-03-13	3.0	3.35	3.08	3.3	0.006	0.83	0.0	0.04	11.22	0.01	2.389	1.00	0.00	1.2	98.8	0.0	0.31	0.52	0.79	4.08	3.3	0.003	0.61	0.0	0.04	14.15	0.00	2.520	4.25	1.68	2.1	97.9	0.0	2.26	0.78	0.54	0.79	2.77	3953	515	2	0	3	0	0	logfile
✔	9ENC	19831	2025-01-14	2024-03-12	3.36	4.12	3.44	3.9	0.002	0.51	0.0	0.04	21.40	0.00	2.232	3.79	0.20	5.3	94.7	0.0	-0.18	0.88	0.87	2.37	3.9	0.003	0.49	0.0	0.03	21.57	0.00	2.485	3.18	1.20	4.5	95.5	0.0	0.36	0.98	0.88	0.87	1.81	6249	566	3	75	0	0	0	logfile
✔	8Yo3	39434	2025-01-17	2024-03-12	3.62	3.81	3.65	3.8	0.002	0.57	0.0	0.04	16.91	0.00	2.177	10.08	0.73	4.6	95.4	0.0	0.06	0.73	0.79	1.70	3.8	0.003	0.60	0.0	0.04	17.01	0.00	2.361	8.95	2.66	4.9	95.1	0.0	0.19	1.77	0.73	0.80	1.68	11514	1430	4	0	0	0	0	logfile
✔	8Yo4	39435	2025-01-18	2024-03-12	3.2	3.42	3.23	3.4	0.003	0.57	0.0	0.04	19.70	0.00	2.047	9.54	0.24	8.1	91.9	0.0	-2.05	0.70	0.82	2.08	3.4	0.003	0.57	0.0	0.04	19.99	0.00	2.030	7.14	3.88	7.6	92.3	0.1	-1.29	0.29	0.69	0.81	1.77	12698	1452	8	48	4	0	0	logfile
✔	8Yo1	39433	2025-01-14	2024-03-12	3.55	3.65	3.49	3.8	0.006	0.81	0.0	0.05	16.11	0.00	2.117	13.57	0.46	3.9	96.1	0.0	-0.33	0.55	0.67	1.75	3.8	0.004	0.63	0.0	0.05	16.11	0.00	2.386	10.89	3.06	3.9	96.1	0.0	-0.27	0.39	0.60	0.69	1.50	5969	746	4	0	3	0	0	logfile
✔	9B0K	44045	2025-01-25	2024-03-12	3.03	3.69	—	3.2	0.005	0.96	0.0	0.06	13.38	0.01	2.097	1.93	0.00	3.0	97.0	0.0	-2.06	0.84	0.83	2.02	3.2	0.003	0.63	0.0	0.04	14.60	0.00	1.965	6.07	0.66	3.5	96.5	0.0	1.39	0.43	0.84	0.84	1.68	23896	3020	14	0	12	0	0	logfile
✔	8Yo5	39436	2025-01-17	2024-03-12	3.93	4.14	3.96	4.0	0.003	0.63	0.0	0.04	18.80	0.00	2.130	13.20	0.54	5.6	94.4	0.0	-1.41	0.81	0.81	0.90	4.0	0.003	0.66	0.0	0.04	19.29	0.00	2.443	11.51	3.97	5.5	94.5	0.0	-1.08	0.40	0.81	0.82	0.71	10342	1284	4	0	0	0	0	logfile
✔	9ENE	19832	2025-01-15	2024-03-12	3.15	3.87	3.19	3.4	0.004	0.64	0.0	0.06	22.56	0.01	2.233	7.49	1.04	5.9	94.1	0.0	-0.77	0.89	0.87	2.75	3.4	0.003	0.62	0.0	0.06	22.25	0.00	2.250	3.45	2.77	6.7	93.3	0.0	-0.76	0.25	0.89	0.87	2.12	8484	658	4	146	0	0	0	logfile
✔	9ENF	19833	2025-01-15	2024-03-12	2.97	4.02	3.10	3.1	0.003	0.61	0.0	0.04	24.22	0.00	2.114	15.41	0.00	7.6	92.4	0.0	-1.68	0.78	0.64	1.13	3.1	0.003	0.67	0.0	0.04	24.31	0.00	2.101	12.23	1.50	6.3	93.7	0.0	-2.10	0.99	0.78	0.66	0.69	8235	530	4	182	0	0	0	logfile
✔	9ENB	19830	2025-01-15	2024-03-12	2.66	3.33	2.75	3.1	0.006	0.55	0.0	0.04	22.37	0.00	2.149	4.96	0.72	4.7	95.3	0.0	-0.08	0.86	0.88	4.12	3.1	0.005	0.55	0.0	0.04	22.15	0.00	2.104	3.28	0.18	4.5	95.5	0.0	0.54	0.87	0.85	0.87	3.93	8264	636	6	144	6	0	0	logfile
✔	8Yo7	39437	2025-01-17	2024-03-12	3.16	3.32	3.21	3.3	0.005	0.65	1.0	0.04	20.57	0.00	1.597	13.44	1.06	5.9	94.1	0.0	-0.79	0.73	0.78	1.60	3.3	0.003	0.57	0.0	0.04	20.54	0.00	2.058	9.69	3.19	4.8	95.2	0.0	-0.50	0.35	0.72	0.79	1.64	11395	1310	14	38	4	2	0	logfile
✔	9B0L	44046	2025-01-14	2024-03-12	2.99	3.13	2.98	3.1	0.004	0.58	0.0	0.04	21.94	0.00	1.888	7.55	0.23	3.7	96.3	0.0	1.24	0.64	0.66	1.96	3.1	0.004	0.59	0.0	0.04	22.36	0.00	2.078	10.62	1.83	3.0	97.0	0.0	0.69	1.12	0.78	0.80	2.38	7051	466	6	155	2	0	0	logfile
✔	8YNM	39427	2025-01-22	2024-03-11	3.49	4.11	3.70	3.9	0.002	0.39	0.0	0.03	13.83	0.00	2.250	5.11	0.00	2.8	97.2	0.0	1.72	0.78	0.82	0.83	3.9	0.002	0.56	0.0	0.04	16.01	0.00	2.470	5.61	1.17	3.1	96.9	0.0	2.03	1.10	0.78	0.83	0.79	15663	1913	11	0	0	0	0	logfile
✔	9AZL	44015	2025-01-17	2024-03-11	2.99	3.39	3.10	3.3	0.003	0.60	0.0	0.04	15.61	0.00	2.016	6.97	1.39	3.2	96.8	0.0	1.55	0.57	0.80	2.93	3.3	0.004	0.62	0.0	0.04	16.12	0.00	1.966	5.27	1.64	3.7	96.3	0.0	1.52	0.70	0.67	0.87	2.68	11252	1428	4	0	5	0	0	logfile
✔	9EMC	19817	2025-01-20	2024-03-11	3.26	3.86	3.07	3.6	0.011	1.34	0.0	0.08	18.59	0.01	2.075	5.04	1.44	2.5	97.5	0.0	-3.73	0.75	0.68	0.35	3.6	0.003	0.57	0.0	0.04	17.58	0.00	1.897	5.55	1.62	2.4	97.6	0.0	1.52	1.15	0.82	0.90	2.05	15489	1977	12	0	12	0	0	logfile
✔	8YNL	39426	2025-01-21	2024-03-11	3.55	4.16	3.78	4.0	0.002	0.39	0.0	0.03	13.83	0.00	2.280	5.24	0.00	1.9	98.1	0.0	1.87	0.80	0.83	0.94	4.0	0.002	0.57	0.0	0.04	16.21	0.00	2.407	6.55	1.35	3.1	96.9	0.0	1.64	2.03	0.81	0.84	0.67	12977	1583	9	0	0	0	0	logfile
✔	8YNK	39425	2025-01-20	2024-03-11	3.62	4.24	3.85	4.0	0.002	0.40	0.0	0.03	13.75	0.00	2.242	4.95	0.00	3.0	97.0	0.0	1.98	0.81	0.82	0.72	4.0	0.002	0.61	0.0	0.04	16.08	0.00	2.496	6.98	1.82	3.0	97.0	0.0	1.81	0.84	0.82	0.83	0.66	11564	1409	8	0	0	0	0	logfile

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