Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CHU	45602	2025-01-14	2024-07-02	3.49	3.92	3.50	3.9	0.006	0.86	3.0	0.06	14.03	0.00	2.165	7.85	0.41	6.6	93.4	0.0	-1.06	0.71	0.80	2.51	3.9	0.003	0.67	0.0	0.04	15.95	0.00	2.440	4.32	2.85	5.8	94.2	0.0	-0.09	0.46	0.71	0.83	1.47	7009	887	5	0	2	0	0	logfile
✔	9iM6	60685	2025-01-16	2024-07-02	3.21	3.45	3.24	3.4	0.003	0.62	0.0	0.04	18.98	0.01	2.142	7.20	0.20	6.4	93.2	0.4	1.15	0.65	0.84	1.89	3.4	0.003	0.57	0.0	0.04	19.02	0.00	2.571	6.31	1.93	6.5	93.3	0.3	1.83	0.29	0.64	0.83	1.74	8982	1134	2	0	0	0	0	logfile
✔	9Ci8	45614	2025-01-17	2024-07-02	3.01	3.35	3.04	3.4	0.004	0.80	0.0	0.05	16.95	0.01	2.258	6.33	4.93	3.7	96.3	0.0	-0.84	0.59	0.67	1.46	3.4	0.005	0.71	1.0	0.04	17.06	0.00	2.309	11.84	5.63	4.7	95.3	0.0	-0.19	0.99	0.60	0.71	1.52	10466	1382	12	0	0	0	0	logfile
✔	9CHV	45603	2025-01-14	2024-07-02	3.95	4.29	3.77	4.3	0.009	1.53	33.0	0.11	15.28	0.01	2.106	11.74	4.86	6.9	93.1	0.0	-1.78	0.65	0.66	0.86	4.3	0.003	0.75	0.0	0.04	16.92	0.00	2.384	8.03	3.19	5.2	94.8	0.0	-0.83	1.52	0.70	0.75	1.13	6644	873	4	0	1	0	0	logfile
✔	9CGZ	45589	2025-01-14	2024-07-01	2.69	2.42	2.56	2.8	0.011	1.91	0.0	0.09	12.93	0.01	2.545	0.00	0.26	6.8	92.0	1.2	-2.13	0.26	0.62	4.31	2.8	0.003	0.65	0.0	0.05	17.79	0.00	2.481	5.13	1.56	7.7	92.3	0.0	-2.43	0.97	0.39	0.79	5.02	6822	438	6	0	0	0	3480	logfile
✔	9CHR	45599	2025-01-22	2024-07-01	3.5	3.52	3.44	3.6	0.013	1.70	0.0	0.09	11.42	0.02	2.557	0.00	0.00	2.2	97.8	0.0	-0.87	0.50	0.76	3.88	3.6	0.003	0.55	0.0	0.04	14.73	0.00	2.413	2.99	0.98	4.4	95.6	0.0	2.33	0.91	0.51	0.77	2.64	19104	1172	4	0	0	0	9596	logfile
✔	9CGX	45588	2025-01-14	2024-07-01	2.97	2.72	2.90	3.0	0.011	2.03	0.0	0.09	13.19	0.01	2.510	0.00	2.82	4.9	92.4	2.8	-2.56	0.26	0.63	4.86	3.1	0.003	0.63	0.0	0.05	16.40	0.00	2.529	3.74	1.28	7.6	92.1	0.2	-2.80	1.38	0.35	0.77	4.81	6960	444	6	0	0	0	3540	logfile
✔	9iLP	60672	2025-01-14	2024-07-01	3.4	3.10	3.17	3.2	0.005	0.81	6.0	0.05	13.89	0.01	2.197	8.33	0.49	7.1	91.8	1.2	-0.33	0.63	0.81	2.30	3.1	0.004	0.66	0.0	0.04	16.60	0.00	2.320	5.35	2.90	7.1	92.4	0.6	0.07	2.00	0.63	0.84	2.12	51180	6444	24	0	0	0	0	logfile
✔	9CHP	45597	2025-01-22	2024-07-01	3.3	3.33	3.28	3.4	0.013	1.75	0.0	0.09	11.61	0.02	2.568	0.00	0.00	1.8	98.2	0.0	-0.91	0.53	0.78	3.14	3.4	0.003	0.51	0.0	0.04	15.32	0.00	2.439	1.78	1.18	4.0	96.0	0.0	2.56	1.28	0.52	0.78	3.03	19104	1172	4	0	0	0	9596	logfile
✔	9CHS	45600	2025-01-22	2024-07-01	3.4	3.17	3.29	3.3	0.013	1.70	0.0	0.09	11.67	0.02	2.560	0.00	0.00	1.9	98.1	0.0	-0.93	0.52	0.79	3.56	3.3	0.002	0.47	0.0	0.04	14.72	0.00	2.363	2.46	1.18	1.8	98.2	0.0	2.92	1.73	0.50	0.79	2.44	19104	1172	4	0	0	0	9596	logfile
✔	9CHQ	45598	2025-01-22	2024-07-01	3.0	2.94	3.01	3.2	0.013	1.73	4.0	0.09	11.63	0.02	2.549	0.00	0.00	1.4	98.6	0.0	-0.39	0.51	0.78	3.82	3.2	0.003	0.52	0.0	0.04	16.04	0.00	2.479	1.94	1.57	1.9	98.1	0.0	2.64	1.72	0.49	0.77	3.35	19104	1172	4	0	0	0	9596	logfile
✔	9CGi	45580	2025-01-20	2024-06-29	2.92	3.60	3.10	3.4	0.005	0.88	2.0	0.05	12.93	0.01	2.249	3.35	0.24	2.3	97.7	0.0	-0.05	0.85	0.88	3.34	3.4	0.003	0.67	0.0	0.04	15.75	0.00	2.446	6.40	1.32	2.6	97.4	0.1	2.00	1.45	0.76	0.84	2.67	14751	1839	5	0	0	0	0	logfile
✔	9CES	45517	2025-01-20	2024-06-27	3.28	3.52	3.31	3.5	0.013	1.96	0.0	0.10	23.23	0.03	2.515	1.01	0.91	4.1	95.9	0.0	-0.87	0.56	0.46	2.49	3.4	0.005	0.67	0.0	0.04	23.34	0.01	2.196	7.83	1.64	6.0	94.0	0.0	0.85	1.27	0.72	0.76	2.44	15839	612	4	181	0	0	7001	logfile
✔	9iKC	60655	2025-01-18	2024-06-27	1.9	2.03	1.95	2.0	0.002	0.47	0.0	0.05	15.82	0.00	2.221	3.12	0.50	2.3	97.7	0.0	0.18	0.75	0.89	6.25	2.0	0.005	0.70	0.0	0.05	15.87	0.00	2.534	2.95	1.22	2.7	97.3	0.0	-0.17	1.14	0.75	0.89	6.57	12555	1587	6	0	0	150	0	logfile
✔	9CF0	45525	2025-01-21	2024-06-27	3.47	3.80	3.65	3.7	0.013	1.83	2.0	0.10	20.15	0.02	1.887	0.70	0.00	4.3	95.2	0.5	-1.20	0.71	0.62	2.71	3.7	0.003	0.62	0.0	0.04	20.57	0.00	2.352	5.51	0.76	4.1	95.8	0.1	0.73	0.99	0.77	0.79	2.25	17040	888	5	79	0	0	8166	logfile
✔	9CF3	45528	2025-01-21	2024-06-27	3.2	3.49	3.29	3.5	0.002	0.72	0.0	0.05	18.41	0.00	1.968	5.72	0.00	2.2	97.8	0.0	2.31	0.66	0.61	3.23	3.5	0.003	0.60	0.0	0.04	20.49	0.00	2.208	6.00	1.52	3.5	96.4	0.1	1.05	2.76	0.74	0.80	3.14	17651	888	5	98	0	0	8383	logfile
✔	9CF1	45526	2025-01-21	2024-06-27	3.52	3.91	3.74	3.8	0.013	1.84	1.0	0.10	20.92	0.02	1.358	1.05	0.76	6.0	93.5	0.5	-1.31	0.72	0.61	2.15	3.7	0.006	0.76	0.0	0.04	21.40	0.01	2.279	11.31	1.64	7.6	92.3	0.1	-1.03	1.09	0.77	0.76	1.47	17138	888	5	82	0	0	8199	logfile
✔	9CF2	45527	2025-01-22	2024-06-27	3.15	2.38	3.26	2.8	0.002	0.61	0.0	0.04	18.51	0.00	1.441	3.97	0.00	1.4	98.6	0.0	2.60	0.67	0.60	2.80	2.8	0.005	0.62	0.0	0.04	20.98	0.00	2.366	5.98	1.01	4.5	95.5	0.0	1.03	1.44	0.74	0.78	3.22	18387	888	7	121	0	0	8649	logfile
✔	9FVD	50803	2025-01-16	2024-06-26	3.2	3.54	3.13	3.4	0.003	0.61	0.0	0.04	15.20	0.00	0.014	16.91	0.00	2.5	97.5	0.0	1.52	0.47	0.80	3.04	3.5	0.008	2.04	1.0	0.19	22.29	0.01	1.716	36.24	3.16	5.3	94.7	0.0	-0.29	2.28	0.43	0.72	1.68	10146	1143	8	54	0	0	0	logfile
✔	9CEJ	45503	2025-01-22	2024-06-26	2.53	2.84	2.56	2.8	0.003	0.60	0.0	0.04	12.85	0.00	2.060	7.19	0.04	1.7	98.2	0.1	0.38	0.56	0.84	3.63	2.8	0.004	0.50	0.0	0.03	15.12	0.00	2.382	4.21	1.60	0.7	99.3	0.0	4.33	0.90	0.55	0.85	3.39	69696	9720	36	0	0	0	0	logfile

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