Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CMH	45748	2025-01-13	2024-07-15	4.0	4.53	4.03	4.1	0.004	0.87	0.0	0.05	14.79	0.00	2.092	27.43	0.77	5.8	94.2	0.0	-1.26	0.61	0.66	—	4.1	0.003	0.84	0.0	0.04	15.66	0.00	2.529	22.08	3.84	5.2	94.8	0.0	-0.98	1.42	0.62	0.68	—	3553	466	2	0	0	0	0	logfile
✔	9iR4	60800	2025-01-19	2024-07-14	3.01	2.32	3.17	2.1	0.002	0.54	0.0	0.04	13.20	0.00	2.127	6.25	0.00	2.7	97.2	0.1	1.06	0.76	0.77	2.60	2.1	0.004	0.60	0.0	0.04	16.07	0.00	2.018	5.62	1.93	2.8	97.1	0.1	1.88	0.93	0.78	0.81	2.67	12604	1584	7	0	2	0	0	logfile
✔	9iR3	60799	2025-01-19	2024-07-13	3.19	2.61	3.23	2.2	0.004	0.64	0.0	0.04	13.70	0.00	2.141	7.89	0.00	2.9	97.0	0.1	1.73	0.76	0.76	1.97	3.1	0.004	0.67	0.0	0.04	16.26	0.00	2.518	7.14	1.86	3.1	96.9	0.1	1.83	0.47	0.77	0.78	1.91	12591	1587	7	0	2	0	0	logfile
✔	9CLP	45728	2025-01-14	2024-07-12	3.43	3.82	3.39	3.8	0.002	0.52	0.0	0.04	12.34	0.00	2.160	4.52	0.00	2.3	97.7	0.0	0.28	0.68	0.78	3.00	3.8	0.002	0.54	0.0	0.04	14.05	0.00	2.287	4.42	1.82	3.0	97.0	0.0	0.21	0.67	0.66	0.79	2.06	5035	650	5	0	11	0	0	logfile
✔	9G2W	50986	2025-01-13	2024-07-11	3.6	4.37	3.63	3.9	0.009	1.17	0.0	0.08	14.47	0.02	2.354	11.68	0.73	1.9	98.1	0.0	-0.44	0.68	0.82	1.48	3.9	0.003	0.65	0.0	0.03	16.61	0.00	2.497	7.53	1.70	1.1	98.9	0.0	5.88	0.72	0.68	0.84	0.72	3838	478	2	0	0	0	0	logfile
✔	9G2U	50984	2025-01-13	2024-07-11	3.45	4.13	3.43	3.8	0.011	1.37	0.0	0.10	12.82	0.02	2.127	9.87	0.26	1.3	98.7	0.0	1.40	0.67	0.77	0.82	3.8	0.003	0.53	0.0	0.03	15.79	0.00	2.572	6.44	1.55	0.7	99.3	0.0	6.39	4.28	0.70	0.83	0.49	3634	456	2	0	0	0	0	logfile
✔	9G2R	50981	2025-01-24	2024-07-11	3.88	4.71	3.95	3.8	0.010	1.24	0.0	0.09	13.90	0.02	2.353	8.96	0.58	1.7	98.3	0.0	0.17	0.81	0.73	0.27	3.9	0.005	0.70	0.0	0.04	15.75	0.00	2.566	12.44	1.03	0.6	99.4	0.0	4.60	1.54	0.85	0.84	0.22	22620	2824	12	0	0	0	0	logfile
✔	9iPU	60781	2025-01-24	2024-07-11	4.3	7.75	4.32	3.7	0.007	1.11	0.0	0.06	27.55	0.01	1.810	11.23	1.63	3.6	96.4	0.0	1.41	0.87	0.66	—	3.7	0.004	0.62	0.0	0.04	27.15	0.00	2.377	14.50	0.00	3.5	96.5	0.0	1.23	1.77	0.92	0.84	—	15750	1130	15	340	2	0	0	logfile
✔	9CKV	45655	2025-01-19	2024-07-09	3.19	3.71	3.28	3.6	0.005	0.66	0.0	0.05	16.35	0.00	1.734	1.63	0.00	4.8	95.2	0.0	-0.12	0.67	0.71	3.86	3.6	0.003	0.53	0.0	0.04	15.01	0.00	1.930	2.22	0.99	4.1	95.9	0.0	-0.27	0.52	0.71	0.77	3.36	13268	872	11	0	26	0	6375	logfile
✔	9CK8	45644	2025-01-16	2024-07-08	3.04	3.30	3.16	3.3	0.005	0.89	0.0	0.06	12.90	0.01	2.121	3.38	0.00	4.0	96.0	0.0	-0.52	0.68	0.84	4.82	3.3	0.005	0.66	0.0	0.05	13.62	0.00	2.474	4.61	2.11	2.9	97.1	0.0	-0.15	0.83	0.64	0.84	4.52	9966	1001	30	0	283	0	0	logfile
✔	9CK3	45639	2025-01-14	2024-07-08	2.04	2.11	1.97	2.0	0.004	0.64	0.0	0.05	19.96	0.00	2.532	3.88	2.08	1.5	98.5	0.0	-0.15	0.59	0.90	8.74	2.0	0.008	0.74	0.0	0.07	19.13	0.00	2.632	3.46	4.86	4.5	95.5	0.0	-0.58	0.32	0.59	0.91	8.59	5748	840	12	0	0	0	0	logfile
✔	9CK7	45643	2025-01-16	2024-07-08	3.45	3.77	3.60	3.8	0.005	0.96	0.0	0.06	13.79	0.02	2.103	4.85	0.11	4.6	95.4	0.0	-1.41	0.64	0.78	3.38	3.7	0.005	1.08	2.0	0.04	14.25	0.01	2.291	9.23	3.85	4.8	95.2	0.0	-0.61	0.87	0.67	0.80	2.79	10026	1001	32	0	292	0	0	logfile
✔	9iNY	60712	2025-01-15	2024-07-08	3.6	3.79	3.23	4.0	0.003	0.75	4.0	0.05	12.39	0.00	1.909	10.87	0.71	7.2	92.0	0.7	-1.95	0.66	0.82	2.41	4.0	0.005	0.69	0.0	0.05	14.11	0.00	2.566	9.26	2.33	9.0	90.1	0.9	-2.75	1.37	0.66	0.85	2.32	8793	1125	3	0	0	0	0	logfile
✔	9CJ8	45625	2025-01-16	2024-07-05	3.74	3.98	3.80	3.9	0.006	1.08	0.0	0.06	14.81	0.01	1.437	4.05	0.00	4.3	95.7	0.0	-1.31	0.65	0.76	2.04	3.9	0.004	0.85	0.0	0.05	16.06	0.00	2.414	13.63	3.44	4.4	95.6	0.0	-0.91	0.58	0.67	0.79	1.63	9750	989	22	0	269	0	0	logfile
✔	9iN6	60702	2025-01-24	2024-07-05	2.8	3.08	2.61	3.0	0.004	0.58	0.0	0.04	12.03	0.00	2.266	4.11	0.13	3.1	96.9	0.0	-0.28	0.56	0.89	4.04	3.0	0.003	0.60	0.0	0.04	14.40	0.00	2.564	3.95	0.94	2.5	97.5	0.0	-0.05	2.43	0.55	0.91	3.46	22373	2897	8	0	0	0	0	logfile
✔	9iMV	60695	2025-01-14	2024-07-04	4.0	3.94	3.45	3.9	0.005	0.76	2.0	0.05	14.71	0.01	2.195	15.73	0.38	7.9	91.4	0.7	-1.09	0.73	0.85	—	3.9	0.005	0.93	4.0	0.05	17.03	0.00	2.233	13.14	2.45	8.4	91.4	0.2	-0.55	0.46	0.75	0.87	—	51420	6480	24	0	0	0	0	logfile
✔	9CiA	45615	2025-01-15	2024-07-03	3.39	3.87	3.61	3.8	0.004	0.80	0.0	0.05	13.15	0.01	2.263	5.57	0.12	4.4	95.6	0.0	-1.69	0.58	0.73	2.21	3.8	0.004	0.72	0.0	0.04	16.11	0.00	2.450	13.20	4.83	4.8	95.2	0.0	-0.85	0.58	0.60	0.75	1.72	7918	1025	13	0	1	0	0	logfile
✔	9iMH	60689	2025-01-14	2024-07-03	4.2	3.96	3.75	4.1	0.006	1.06	7.0	0.08	15.41	0.01	2.171	19.62	0.70	12.0	84.5	3.5	-2.10	0.51	0.74	—	4.1	0.005	0.96	0.0	0.05	15.50	0.01	2.506	15.67	0.00	13.6	84.8	1.6	-1.61	0.82	0.51	0.78	—	7674	960	6	0	0	0	0	logfile
✔	9Ci8	45614	2025-01-17	2024-07-02	3.01	3.35	3.04	3.4	0.004	0.80	0.0	0.05	16.95	0.01	2.258	6.33	4.93	3.7	96.3	0.0	-0.84	0.59	0.67	1.46	3.4	0.005	0.71	1.0	0.04	17.06	0.00	2.309	11.84	5.63	4.7	95.3	0.0	-0.19	0.99	0.60	0.71	1.52	10466	1382	12	0	0	0	0	logfile
✔	9CHV	45603	2025-01-14	2024-07-02	3.95	4.29	3.77	4.3	0.009	1.53	33.0	0.11	15.28	0.01	2.106	11.74	4.86	6.9	93.1	0.0	-1.78	0.65	0.66	0.86	4.3	0.003	0.75	0.0	0.04	16.92	0.00	2.384	8.03	3.19	5.2	94.8	0.0	-0.83	1.52	0.70	0.75	1.13	6644	873	4	0	1	0	0	logfile

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