Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BKB	16095	2024-02-22	2022-11-08	2.2	1.97	2.09	2.0	0.003	0.61	0.0	0.04	17.88	0.00	2.225	1.59	1.40	1.4	98.6	0.0	4.82	0.71	0.86	6.67	2.0	0.005	0.68	0.0	0.04	17.67	0.01	2.092	3.51	2.00	1.8	98.2	0.0	4.47	0.14	0.71	0.87	7.13	35139	4128	54	0	6	1317	0	logfile
✔	8BK9	16093	2024-02-22	2022-11-08	2.1	1.91	2.07	1.9	0.003	0.61	0.0	0.04	17.00	0.00	2.222	1.87	0.49	1.2	98.8	0.0	4.72	0.69	0.87	6.31	1.9	0.005	0.68	0.0	0.04	17.12	0.00	2.246	2.77	0.38	1.8	98.2	0.0	4.48	0.18	0.69	0.88	6.63	34978	4128	54	0	6	1156	0	logfile
✔	8F2U	28827	2024-02-17	2022-11-08	3.53	3.13	3.83	3.3	0.002	0.56	0.0	0.07	15.52	0.00	1.983	6.37	0.00	2.8	97.2	0.0	1.04	0.60	0.70	1.53	3.2	0.004	0.62	0.0	0.04	17.37	0.00	2.069	7.57	1.48	3.8	96.2	0.0	0.65	2.23	0.60	0.72	1.44	17684	2236	12	0	0	0	0	logfile
✔	8F2M	28822	2024-02-13	2022-11-08	3.7	3.60	3.53	3.6	0.003	0.67	0.0	0.04	16.38	0.01	2.253	11.21	0.38	5.0	94.0	1.0	-0.85	0.33	0.72	1.58	3.6	0.004	0.77	0.0	0.04	17.00	0.01	2.178	11.11	3.84	7.4	91.6	1.0	-0.40	0.75	0.36	0.78	1.70	4696	592	4	0	0	0	0	logfile
✔	8BK8	16092	2024-02-22	2022-11-08	2.9	2.39	2.83	2.7	0.003	0.66	0.0	0.05	13.28	0.01	2.252	5.52	0.00	3.2	96.8	0.0	-0.31	0.59	0.80	4.12	2.6	0.004	0.60	0.0	0.05	16.58	0.00	2.206	7.24	3.56	3.2	96.8	0.0	0.18	0.44	0.59	0.83	4.01	32500	4044	4	0	0	0	0	logfile
✔	8HEE	34689	2024-02-18	2022-11-08	3.2	3.38	3.21	3.4	0.006	0.88	0.0	0.05	15.88	0.01	1.796	14.37	0.64	7.5	92.5	0.0	-1.31	0.73	0.78	2.45	3.4	0.003	0.63	0.0	0.04	16.70	0.00	2.118	11.29	3.99	6.7	93.3	0.0	-0.97	0.57	0.72	0.79	2.58	21905	2775	15	0	0	0	0	logfile
✔	8BK7	16091	2024-02-22	2022-11-08	3.3	3.07	3.32	3.2	0.004	0.77	0.0	0.05	18.14	0.01	2.168	7.75	2.95	3.6	96.4	0.0	-0.64	0.55	0.80	2.37	3.1	0.004	0.61	0.0	0.04	18.03	0.00	2.146	9.93	5.58	4.1	95.9	0.0	-0.22	0.47	0.58	0.82	2.65	32500	4044	4	0	0	0	0	logfile
✔	8F2R	28825	2024-02-21	2022-11-08	3.12	3.35	3.19	3.4	0.004	0.80	0.0	0.04	15.27	0.01	2.031	6.01	0.12	2.2	97.6	0.2	0.09	0.64	0.69	2.21	3.4	0.003	0.56	0.0	0.03	15.84	0.00	2.058	6.12	1.73	2.0	98.0	0.1	2.23	1.24	0.67	0.78	2.25	29276	1837	10	0	0	0	14772	logfile
✔	8HEB	34686	2024-02-21	2022-11-08	3.53	3.94	3.42	3.8	0.004	0.57	0.0	0.05	14.17	0.00	2.053	6.58	0.03	4.5	95.4	0.1	-0.25	0.82	0.84	2.43	3.8	0.003	0.55	0.0	0.04	14.44	0.00	2.064	7.48	2.66	4.6	95.4	0.0	-0.05	0.35	0.83	0.86	2.23	29912	3769	30	0	63	0	0	logfile
✔	8HEC	34687	2024-02-21	2022-11-08	3.5	4.09	3.54	3.8	0.004	0.60	0.0	0.05	14.80	0.00	2.203	8.43	0.12	4.7	95.1	0.1	-0.28	0.82	0.84	1.80	3.8	0.003	0.55	0.0	0.04	14.98	0.00	2.124	9.40	3.65	4.8	95.2	0.0	-0.13	0.30	0.83	0.85	1.88	29925	3769	29	0	61	0	0	logfile
✔	8HED	34688	2024-02-13	2022-11-08	3.59	4.08	3.68	3.9	0.004	0.67	0.0	0.04	13.89	0.00	2.247	6.94	0.00	6.7	93.1	0.2	-0.46	0.77	0.83	2.95	3.9	0.003	0.64	0.0	0.04	14.96	0.00	2.219	6.78	1.96	6.4	93.3	0.2	-0.65	0.95	0.77	0.83	2.42	3318	427	5	0	3	0	0	logfile
✔	8HDZ	34684	2024-02-15	2022-11-07	3.05	3.28	3.11	3.3	0.002	0.44	0.0	0.04	13.94	0.00	2.174	9.75	0.00	4.3	95.7	0.1	0.18	0.49	0.48	0.43	3.3	0.002	0.58	0.0	0.04	16.12	0.00	2.083	14.74	2.01	4.8	95.1	0.1	-0.26	1.02	0.54	0.57	0.70	11861	1457	3	0	0	0	0	logfile
✔	8F2B	28812	2024-02-14	2022-11-07	2.0	1.79	2.02	1.9	0.004	0.55	0.0	0.04	14.23	0.00	2.278	5.13	1.32	1.0	99.0	0.0	-2.02	0.54	0.74	4.60	1.9	0.003	0.63	0.0	0.04	16.03	0.00	2.172	6.20	1.98	2.6	97.4	0.0	1.21	0.96	0.55	0.75	5.08	10360	1273	12	0	16	31	0	logfile
✔	8F2A	28810	2024-02-14	2022-11-07	2.2	2.40	2.32	2.5	0.004	0.60	0.0	0.05	13.83	0.00	2.188	4.68	0.76	1.7	98.3	0.0	-2.70	0.65	0.84	4.09	2.5	0.002	0.57	0.0	0.04	15.89	0.00	2.187	6.30	1.42	1.6	98.4	0.0	0.76	0.49	0.64	0.84	3.86	10044	1276	9	0	5	0	0	logfile
✔	8F29	28809	2024-02-23	2022-11-07	4.0	3.71	3.34	3.1	0.004	0.79	0.0	0.05	18.21	0.00	2.025	19.05	0.24	4.7	95.3	0.0	-0.22	0.78	0.74	—	3.1	0.006	0.88	1.0	0.05	18.15	0.00	1.713	27.21	4.53	6.0	94.0	0.1	-0.37	0.51	0.80	0.80	—	38906	5116	32	0	11	0	0	logfile
✔	8F25	28807	2024-02-17	2022-11-07	2.6	3.22	2.78	2.9	0.007	0.79	0.0	0.05	12.02	0.00	2.123	4.52	0.00	4.0	96.0	0.0	2.44	0.86	0.89	3.57	2.9	0.004	0.57	1.0	0.05	15.48	0.00	2.121	7.51	2.31	3.2	96.8	0.0	1.91	1.15	0.82	0.88	2.65	70560	9240	60	0	0	0	0	logfile
✔	8HDR	34678	2024-02-19	2022-11-06	3.66	3.32	3.68	3.3	0.005	0.66	0.0	0.05	13.59	0.00	2.116	12.84	8.30	9.0	91.0	0.0	-2.65	0.60	0.74	1.89	3.3	0.002	0.68	0.0	0.04	16.10	0.00	2.164	10.62	4.66	6.4	93.6	0.0	-1.89	0.85	0.63	0.78	2.12	78708	10296	54	0	0	0	0	logfile
✔	8HDW	34681	2024-02-13	2022-11-06	3.0	2.72	2.96	2.9	0.006	0.83	0.0	0.05	15.95	0.01	1.939	13.55	11.19	11.8	88.2	0.0	-2.56	0.46	0.72	1.96	2.8	0.004	0.76	1.0	0.04	17.32	0.01	1.710	13.23	6.00	8.4	91.6	0.0	-1.55	1.29	0.53	0.75	1.77	54552	7140	30	0	0	0	0	logfile
✔	8HDS	34679	2024-02-13	2022-11-06	3.57	3.28	3.59	3.4	0.007	1.11	0.0	0.06	10.70	0.01	2.312	4.13	0.63	10.9	89.1	0.0	-6.20	0.55	0.77	2.49	3.4	0.004	0.73	0.0	0.04	16.37	0.00	2.090	10.99	4.80	10.2	89.8	0.0	-2.92	1.24	0.58	0.79	1.73	53532	6864	24	0	0	0	0	logfile
✔	8F1K	28791	2024-02-21	2022-11-05	2.8	3.72	2.83	3.2	0.002	0.47	0.0	0.04	15.01	0.00	2.130	4.40	1.30	2.3	97.7	0.0	0.58	0.88	0.82	2.68	3.2	0.006	0.60	0.0	0.04	16.35	0.00	2.095	5.69	0.85	2.8	97.2	0.0	1.13	1.61	0.89	0.85	2.59	30854	3689	14	95	3	10	0	logfile

• ← previous
• Page 109 of 588
• next →