Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BLF	16109	2024-02-13	2022-11-09	3.9	3.71	3.78	3.5	0.004	0.68	0.0	0.04	13.76	0.00	2.210	9.55	0.00	1.4	98.6	0.0	0.29	0.80	0.79	1.52	3.5	0.003	0.57	0.0	0.04	14.74	0.00	2.188	12.45	1.13	1.2	98.8	0.0	1.20	0.36	0.79	0.77	1.24	54376	7343	28	0	14	0	0	logfile
✔	8HF0	34707	2024-02-21	2022-11-09	3.72	3.91	3.82	3.8	0.003	0.57	0.0	0.04	15.85	0.00	2.157	10.42	0.00	3.4	96.6	0.0	0.32	0.88	0.79	1.25	3.8	0.003	0.61	0.0	0.04	17.05	0.00	2.150	12.14	1.41	3.8	96.1	0.0	0.56	0.39	0.88	0.79	1.10	29510	3388	7	97	0	0	0	logfile
✔	8BL4	16101	2024-02-21	2022-11-09	3.9	3.96	3.83	3.9	0.018	1.88	5.0	0.10	10.49	0.01	1.199	10.85	0.45	5.9	93.3	0.8	-1.43	0.58	0.67	0.61	3.9	0.004	0.85	0.0	0.05	16.20	0.01	2.039	15.37	4.24	10.1	89.7	0.2	-1.97	1.79	0.62	0.73	0.93	96456	12480	48	0	0	0	0	logfile
✔	8BL7	16102	2024-02-13	2022-11-09	4.4	4.06	4.17	3.8	0.004	0.78	0.0	0.05	13.65	0.00	2.270	7.33	0.00	1.5	98.5	0.0	-0.37	0.83	0.78	—	3.8	0.003	0.56	0.0	0.04	13.10	0.00	2.150	14.18	0.00	1.5	98.5	0.0	1.31	0.31	0.84	0.78	—	54474	7350	28	0	14	0	0	logfile
✔	8HF7	34715	2024-02-14	2022-11-09	3.8	4.66	1.82	4.2	0.006	1.34	2.0	0.07	14.02	0.01	2.294	7.91	0.61	5.9	93.5	0.6	-3.03	0.63	0.74	0.62	4.3	0.003	0.76	0.0	0.04	16.19	0.00	2.136	16.10	2.53	6.1	93.5	0.4	0.33	0.60	0.64	0.77	0.49	8978	1126	4	0	26	0	0	logfile
✔	8F33	28830	2024-02-15	2022-11-09	3.28	3.02	3.48	3.0	0.005	0.80	0.0	0.06	13.62	0.01	2.359	6.24	0.00	3.9	96.1	0.0	-1.40	0.66	0.81	4.00	3.0	0.006	0.64	0.0	0.05	15.23	0.00	2.279	10.37	1.89	4.9	95.1	0.0	-0.30	0.77	0.68	0.85	4.21	12545	1535	10	0	5	0	0	logfile
✔	8BLC	16106	2024-02-13	2022-11-09	2.7	2.79	2.65	2.7	0.005	0.51	0.0	0.04	17.03	0.00	2.062	11.39	1.44	0.9	99.1	0.0	1.13	0.81	0.83	2.54	2.7	0.002	0.46	0.0	0.04	16.74	0.00	2.049	11.32	0.67	0.9	99.1	0.0	1.42	0.25	0.82	0.86	2.40	55646	7336	42	0	42	1298	0	logfile
✔	8BKZ	16099	2024-02-16	2022-11-09	2.3	2.35	2.31	2.3	0.003	0.52	0.0	0.04	17.16	0.00	2.085	9.88	0.07	0.8	99.2	0.0	1.74	0.85	0.87	3.52	2.3	0.003	0.50	0.0	0.04	16.91	0.00	1.994	10.41	0.95	1.2	98.8	0.0	1.84	0.21	0.86	0.89	3.93	67875	8680	70	0	42	3505	0	logfile
✔	8HF5	34713	2024-02-14	2022-11-09	2.9	3.54	3.39	3.4	0.011	1.38	7.0	0.10	14.89	0.01	2.063	7.39	3.74	5.4	93.9	0.6	-1.78	0.70	0.85	2.12	3.4	0.003	0.61	0.0	0.04	16.69	0.00	1.977	5.62	1.72	5.3	94.6	0.1	0.79	1.32	0.70	0.86	1.39	8918	1126	4	0	4	0	0	logfile
✔	8F39	28835	2024-02-23	2022-11-09	3.5	4.18	3.05	3.6	0.003	0.74	0.0	0.04	15.48	0.01	1.955	14.72	0.22	5.2	94.6	0.2	0.30	0.77	0.70	0.90	3.6	0.003	0.72	0.0	0.04	16.17	0.00	1.914	16.21	2.14	5.5	94.2	0.2	0.00	0.47	0.81	0.81	0.88	38767	5098	32	0	9	0	0	logfile
✔	8BKY	16098	2024-02-17	2022-11-09	3.6	3.72	3.43	3.7	0.003	0.59	0.0	0.05	16.82	0.00	1.708	9.74	0.03	5.4	94.6	0.0	-0.58	0.58	0.85	2.68	3.7	0.002	0.54	0.0	0.05	17.35	0.00	2.182	5.07	2.50	6.3	93.7	0.0	-0.29	0.49	0.59	0.86	2.39	68280	8808	24	0	0	0	0	logfile
✔	8HF4	34712	2024-02-14	2022-11-09	2.8	3.66	3.29	3.5	0.006	0.75	1.0	0.05	14.96	0.00	2.207	5.73	1.11	4.7	94.9	0.4	2.04	0.73	0.86	1.86	3.5	0.002	0.53	0.0	0.04	16.56	0.00	2.194	4.96	1.41	4.3	95.7	0.0	2.32	0.95	0.71	0.85	2.02	8916	1126	4	0	2	0	0	logfile
✔	8F32	28829	2024-02-15	2022-11-09	3.71	3.36	3.64	3.4	0.005	0.84	0.0	0.06	13.43	0.01	2.201	12.25	0.00	4.3	95.7	0.0	-1.60	0.61	0.79	3.14	3.4	0.004	0.59	0.0	0.05	16.23	0.00	2.215	11.45	5.53	3.7	96.3	0.0	-0.01	0.46	0.62	0.81	3.31	12545	1535	10	0	5	0	0	logfile
✔	8F34	28831	2024-02-15	2022-11-09	3.12	2.66	3.35	2.9	0.005	0.77	0.0	0.06	14.08	0.00	2.333	6.69	0.00	6.6	93.4	0.0	-0.75	0.62	0.80	3.31	2.9	0.005	0.68	0.0	0.05	16.30	0.00	2.210	9.29	2.47	6.0	94.0	0.0	-0.33	0.76	0.61	0.83	3.07	12545	1535	10	0	5	0	0	logfile
✔	8F35	28832	2024-02-15	2022-11-09	3.17	2.86	3.36	3.0	0.005	0.75	0.0	0.05	14.23	0.01	2.235	9.63	0.00	8.9	91.1	0.0	-1.03	0.60	0.79	2.87	3.0	0.004	0.58	0.0	0.05	15.87	0.00	2.178	9.95	1.60	6.0	94.0	0.0	0.18	0.85	0.61	0.84	3.80	12525	1535	5	0	0	0	0	logfile
✔	8BLD	16107	2024-02-13	2022-11-09	4.4	4.20	4.38	3.9	0.004	0.77	0.0	0.05	13.60	0.00	2.174	12.39	0.00	1.8	98.2	0.0	0.34	0.83	0.77	—	3.9	0.003	0.59	0.0	0.04	13.15	0.00	2.123	14.60	0.02	2.1	97.9	0.0	1.05	1.03	0.84	0.78	—	54376	7343	28	0	14	0	0	logfile
✔	8HF6	34714	2024-02-14	2022-11-09	3.1	3.47	3.46	3.4	0.009	1.05	3.0	0.07	15.34	0.00	2.207	8.43	3.23	4.6	95.1	0.3	1.20	0.72	0.87	2.29	3.4	0.003	0.57	0.0	0.04	16.26	0.00	2.185	6.39	1.31	4.1	95.9	0.0	2.03	1.31	0.71	0.87	1.75	8916	1126	4	0	2	0	0	logfile
✔	8HF2	34710	2024-02-13	2022-11-09	4.14	5.08	4.11	4.8	0.012	1.04	0.0	0.05	14.20	0.00	2.264	15.84	0.00	5.1	94.9	0.0	-4.39	0.57	0.77	—	4.7	0.003	0.76	0.0	0.04	13.32	0.00	2.100	16.15	0.00	2.4	97.6	0.0	0.87	2.45	0.51	0.80	—	4660	600	5	0	0	0	0	logfile
✔	8BK7	16091	2024-02-22	2022-11-08	3.3	3.07	3.32	3.2	0.004	0.77	0.0	0.05	18.14	0.01	2.168	7.75	2.95	3.6	96.4	0.0	-0.64	0.55	0.80	2.37	3.1	0.004	0.61	0.0	0.04	18.03	0.00	2.146	9.93	5.58	4.1	95.9	0.0	-0.22	0.47	0.58	0.82	2.65	32500	4044	4	0	0	0	0	logfile
✔	8HEG	34690	2024-02-20	2022-11-08	3.2	3.40	3.27	3.4	0.004	0.70	0.0	0.04	15.87	0.01	0.403	16.75	1.09	7.1	92.6	0.3	-1.33	0.69	0.78	2.57	3.4	0.003	0.60	0.0	0.04	16.50	0.00	2.082	6.74	3.84	6.0	93.9	0.1	-1.15	1.24	0.70	0.78	2.46	26595	3385	20	0	0	0	0	logfile

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