Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BM1	16117	2024-02-14	2022-11-10	2.7	2.71	2.68	2.6	0.004	0.73	0.0	0.05	15.95	0.00	1.948	13.36	0.81	1.8	98.1	0.1	1.10	0.82	0.83	2.93	2.6	0.004	0.60	0.0	0.04	16.52	0.00	2.106	11.24	1.18	1.0	99.0	0.0	1.13	0.39	0.84	0.88	3.02	61416	8008	56	0	42	2056	0	logfile
✔	8BLY	16115	2024-02-13	2022-11-10	3.2	3.21	3.09	3.1	0.002	0.47	0.0	0.04	16.45	0.00	1.971	10.01	0.18	1.5	98.5	0.0	1.29	0.83	0.86	2.22	3.1	0.004	0.50	0.0	0.04	16.25	0.00	1.844	9.35	2.11	1.5	98.5	0.0	1.25	0.26	0.84	0.88	2.05	54334	7336	28	0	28	0	0	logfile
✔	8BM0	16116	2024-02-14	2022-11-10	3.4	3.46	3.31	3.1	0.003	0.64	0.0	0.04	16.35	0.00	2.002	9.99	0.11	1.6	98.4	0.0	0.68	0.85	0.84	2.49	3.1	0.003	0.56	0.0	0.04	16.30	0.00	1.902	15.12	2.00	1.7	98.3	0.0	1.47	0.36	0.86	0.86	2.39	59394	8008	35	0	42	0	0	logfile
✔	8F4B	28854	2024-02-14	2022-11-10	3.27	3.47	3.40	3.5	0.014	1.82	0.0	0.09	12.70	0.00	2.278	1.25	0.10	5.0	95.0	0.0	-2.97	0.50	0.68	1.95	3.5	0.003	0.56	0.0	0.04	15.33	0.00	2.202	5.58	2.20	2.4	97.6	0.0	0.59	1.23	0.63	0.81	1.48	9487	1198	2	0	2	0	0	logfile
✔	8F41	28849	2024-02-14	2022-11-10	3.9	3.12	3.87	3.3	0.005	0.93	0.0	0.05	13.03	0.01	1.432	21.12	0.39	9.4	90.6	0.0	-1.29	0.54	0.55	0.90	3.1	0.006	0.83	0.0	0.05	16.45	0.01	2.046	14.72	2.84	9.4	90.6	0.0	-1.40	2.20	0.60	0.70	1.48	57846	7464	18	0	6	0	0	logfile
✔	8F3E	28848	2024-02-19	2022-11-10	3.09	3.38	3.21	3.4	0.003	0.52	0.0	0.04	9.85	0.00	2.213	7.20	2.91	1.9	98.1	0.0	1.77	0.61	0.64	1.05	3.4	0.003	0.60	0.0	0.04	15.60	0.00	2.082	10.36	2.95	1.7	98.3	0.0	1.66	1.75	0.63	0.80	1.91	23627	3095	3	0	0	0	0	logfile
✔	8BMR	16122	2024-02-13	2022-11-10	3.8	4.05	3.86	4.0	0.003	0.61	0.0	0.04	13.55	0.00	2.228	8.06	0.00	5.0	95.0	0.0	-0.04	0.69	0.82	1.29	4.0	0.003	0.66	0.0	0.04	15.92	0.00	2.231	8.53	2.76	4.0	96.0	0.0	0.58	0.35	0.70	0.82	1.00	6330	808	3	0	0	0	0	logfile
✔	8BMP	16120	2024-02-13	2022-11-10	3.2	3.48	3.25	3.5	0.003	0.64	0.0	0.04	14.23	0.00	2.246	6.03	0.00	2.5	97.5	0.0	0.66	0.69	0.84	3.03	3.5	0.004	0.59	0.0	0.04	15.56	0.00	2.269	5.84	0.84	2.6	97.4	0.0	0.96	1.06	0.64	0.81	2.32	7794	989	6	0	3	0	0	logfile
✔	8BMQ	16121	2024-02-13	2022-11-10	3.6	3.94	3.58	4.0	0.006	0.76	0.0	0.05	15.48	0.00	2.190	7.37	0.00	5.5	94.5	0.0	-0.07	0.72	0.81	2.32	4.0	0.003	0.51	0.0	0.04	15.57	0.00	2.170	6.55	1.68	4.6	95.4	0.0	0.57	0.29	0.72	0.81	1.76	7784	987	6	0	3	0	0	logfile
✔	8BMo	16119	2024-02-14	2022-11-10	3.4	3.37	3.39	3.2	0.004	0.55	0.0	0.04	16.09	0.00	1.931	11.77	0.13	2.0	98.0	0.0	1.29	0.84	0.85	2.70	3.2	0.002	0.53	0.0	0.04	16.31	0.00	1.971	12.30	1.63	1.5	98.5	0.0	1.49	0.31	0.85	0.87	2.36	59346	8008	35	0	28	0	0	logfile
✔	8BMD	16118	2024-02-13	2022-11-10	2.8	2.93	2.78	2.8	0.004	0.60	0.0	0.04	16.85	0.00	2.030	9.24	1.77	1.8	98.2	0.0	0.48	0.83	0.86	2.79	2.8	0.002	0.49	0.0	0.04	16.48	0.00	2.004	10.66	1.86	1.2	98.8	0.0	1.31	0.22	0.84	0.87	2.65	55532	7336	42	0	42	1184	0	logfile
✔	8BLQ	16113	2024-02-14	2022-11-10	3.97	5.74	4.01	3.9	0.002	0.55	0.0	0.04	12.20	0.00	2.201	11.99	0.10	4.9	95.1	0.0	-3.81	0.92	0.71	1.20	3.9	0.004	0.65	0.0	0.04	13.97	0.00	2.075	24.32	1.07	6.9	93.1	0.0	-1.76	1.43	0.94	0.80	1.06	9210	1220	5	0	0	0	0	logfile
✔	8HFC	34717	2024-02-13	2022-11-10	3.5	3.66	3.42	3.7	0.007	0.67	0.0	0.05	18.01	0.00	2.164	9.17	3.88	6.5	93.3	0.2	-2.90	0.68	0.82	2.21	3.7	0.002	0.59	0.0	0.04	18.02	0.00	2.189	5.52	2.97	4.0	96.0	0.0	0.17	1.19	0.64	0.80	2.11	4007	498	3	0	3	0	0	logfile
✔	8F33	28830	2024-02-15	2022-11-09	3.28	3.02	3.48	3.0	0.005	0.80	0.0	0.06	13.62	0.01	2.359	6.24	0.00	3.9	96.1	0.0	-1.40	0.66	0.81	4.00	3.0	0.006	0.64	0.0	0.05	15.23	0.00	2.279	10.37	1.89	4.9	95.1	0.0	-0.30	0.77	0.68	0.85	4.21	12545	1535	10	0	5	0	0	logfile
✔	8HF0	34707	2024-02-21	2022-11-09	3.72	3.91	3.82	3.8	0.003	0.57	0.0	0.04	15.85	0.00	2.157	10.42	0.00	3.4	96.6	0.0	0.32	0.88	0.79	1.25	3.8	0.003	0.61	0.0	0.04	17.05	0.00	2.150	12.14	1.41	3.8	96.1	0.0	0.56	0.39	0.88	0.79	1.10	29510	3388	7	97	0	0	0	logfile
✔	8F34	28831	2024-02-15	2022-11-09	3.12	2.66	3.35	2.9	0.005	0.77	0.0	0.06	14.08	0.00	2.333	6.69	0.00	6.6	93.4	0.0	-0.75	0.62	0.80	3.31	2.9	0.005	0.68	0.0	0.05	16.30	0.00	2.210	9.29	2.47	6.0	94.0	0.0	-0.33	0.76	0.61	0.83	3.07	12545	1535	10	0	5	0	0	logfile
✔	8HF5	34713	2024-02-14	2022-11-09	2.9	3.54	3.39	3.4	0.011	1.38	7.0	0.10	14.89	0.01	2.063	7.39	3.74	5.4	93.9	0.6	-1.78	0.70	0.85	2.12	3.4	0.003	0.61	0.0	0.04	16.69	0.00	1.977	5.62	1.72	5.3	94.6	0.1	0.79	1.32	0.70	0.86	1.39	8918	1126	4	0	4	0	0	logfile
✔	8HF4	34712	2024-02-14	2022-11-09	2.8	3.66	3.29	3.5	0.006	0.75	1.0	0.05	14.96	0.00	2.207	5.73	1.11	4.7	94.9	0.4	2.04	0.73	0.86	1.86	3.5	0.002	0.53	0.0	0.04	16.56	0.00	2.194	4.96	1.41	4.3	95.7	0.0	2.32	0.95	0.71	0.85	2.02	8916	1126	4	0	2	0	0	logfile
✔	8F32	28829	2024-02-15	2022-11-09	3.71	3.36	3.64	3.4	0.005	0.84	0.0	0.06	13.43	0.01	2.201	12.25	0.00	4.3	95.7	0.0	-1.60	0.61	0.79	3.14	3.4	0.004	0.59	0.0	0.05	16.23	0.00	2.215	11.45	5.53	3.7	96.3	0.0	-0.01	0.46	0.62	0.81	3.31	12545	1535	10	0	5	0	0	logfile
✔	8BKY	16098	2024-02-17	2022-11-09	3.6	3.72	3.43	3.7	0.003	0.59	0.0	0.05	16.82	0.00	1.708	9.74	0.03	5.4	94.6	0.0	-0.58	0.58	0.85	2.68	3.7	0.002	0.54	0.0	0.05	17.35	0.00	2.182	5.07	2.50	6.3	93.7	0.0	-0.29	0.49	0.59	0.86	2.39	68280	8808	24	0	0	0	0	logfile

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