Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BMT	16125	2024-02-15	2022-11-10	2.5	2.69	2.49	2.5	0.003	0.62	0.0	0.05	15.40	0.00	1.922	10.73	1.12	1.8	98.2	0.0	1.86	0.83	0.85	3.16	2.6	0.003	0.68	0.0	0.05	16.20	0.00	1.987	12.70	1.07	1.7	98.3	0.0	1.10	1.50	0.84	0.87	2.86	65711	8680	56	0	42	1339	0	logfile
✔	8BLW	16114	2024-02-14	2022-11-10	3.22	3.93	3.33	3.8	0.005	1.05	0.0	0.06	14.23	0.01	2.257	6.97	0.00	9.3	90.7	0.0	-1.93	0.70	0.79	3.04	3.8	0.004	0.64	0.0	0.05	14.97	0.00	2.177	14.26	3.00	8.6	91.4	0.0	-1.67	1.01	0.64	0.74	2.92	9883	1250	3	0	1	0	0	logfile
✔	8F4B	28854	2024-02-14	2022-11-10	3.27	3.47	3.40	3.5	0.014	1.82	0.0	0.09	12.70	0.00	2.278	1.25	0.10	5.0	95.0	0.0	-2.97	0.50	0.68	1.95	3.5	0.003	0.56	0.0	0.04	15.33	0.00	2.202	5.58	2.20	2.4	97.6	0.0	0.59	1.23	0.63	0.81	1.48	9487	1198	2	0	2	0	0	logfile
✔	8HFC	34717	2024-02-13	2022-11-10	3.5	3.66	3.42	3.7	0.007	0.67	0.0	0.05	18.01	0.00	2.164	9.17	3.88	6.5	93.3	0.2	-2.90	0.68	0.82	2.21	3.7	0.002	0.59	0.0	0.04	18.02	0.00	2.189	5.52	2.97	4.0	96.0	0.0	0.17	1.19	0.64	0.80	2.11	4007	498	3	0	3	0	0	logfile
✔	8BMP	16120	2024-02-13	2022-11-10	3.2	3.48	3.25	3.5	0.003	0.64	0.0	0.04	14.23	0.00	2.246	6.03	0.00	2.5	97.5	0.0	0.66	0.69	0.84	3.03	3.5	0.004	0.59	0.0	0.04	15.56	0.00	2.269	5.84	0.84	2.6	97.4	0.0	0.96	1.06	0.64	0.81	2.32	7794	989	6	0	3	0	0	logfile
✔	8BMD	16118	2024-02-13	2022-11-10	2.8	2.93	2.78	2.8	0.004	0.60	0.0	0.04	16.85	0.00	2.030	9.24	1.77	1.8	98.2	0.0	0.48	0.83	0.86	2.79	2.8	0.002	0.49	0.0	0.04	16.48	0.00	2.004	10.66	1.86	1.2	98.8	0.0	1.31	0.22	0.84	0.87	2.65	55532	7336	42	0	42	1184	0	logfile
✔	8BMo	16119	2024-02-14	2022-11-10	3.4	3.37	3.39	3.2	0.004	0.55	0.0	0.04	16.09	0.00	1.931	11.77	0.13	2.0	98.0	0.0	1.29	0.84	0.85	2.70	3.2	0.002	0.53	0.0	0.04	16.31	0.00	1.971	12.30	1.63	1.5	98.5	0.0	1.49	0.31	0.85	0.87	2.36	59346	8008	35	0	28	0	0	logfile
✔	8BMS	16124	2024-02-13	2022-11-10	2.6	2.85	2.63	3.0	0.003	0.52	0.0	0.04	14.83	0.00	1.956	6.11	0.00	2.2	97.8	0.0	0.83	0.63	0.84	3.85	3.0	0.004	0.55	0.0	0.04	17.03	0.00	1.877	6.27	2.43	2.0	98.0	0.0	0.93	0.27	0.63	0.85	3.67	6570	822	8	0	4	72	0	logfile
✔	8BMR	16122	2024-02-13	2022-11-10	3.8	4.05	3.86	4.0	0.003	0.61	0.0	0.04	13.55	0.00	2.228	8.06	0.00	5.0	95.0	0.0	-0.04	0.69	0.82	1.29	4.0	0.003	0.66	0.0	0.04	15.92	0.00	2.231	8.53	2.76	4.0	96.0	0.0	0.58	0.35	0.70	0.82	1.00	6330	808	3	0	0	0	0	logfile
✔	8BLY	16115	2024-02-13	2022-11-10	3.2	3.21	3.09	3.1	0.002	0.47	0.0	0.04	16.45	0.00	1.971	10.01	0.18	1.5	98.5	0.0	1.29	0.83	0.86	2.22	3.1	0.004	0.50	0.0	0.04	16.25	0.00	1.844	9.35	2.11	1.5	98.5	0.0	1.25	0.26	0.84	0.88	2.05	54334	7336	28	0	28	0	0	logfile
✔	8BLQ	16113	2024-02-14	2022-11-10	3.97	5.74	4.01	3.9	0.002	0.55	0.0	0.04	12.20	0.00	2.201	11.99	0.10	4.9	95.1	0.0	-3.81	0.92	0.71	1.20	3.9	0.004	0.65	0.0	0.04	13.97	0.00	2.075	24.32	1.07	6.9	93.1	0.0	-1.76	1.43	0.94	0.80	1.06	9210	1220	5	0	0	0	0	logfile
✔	8BM0	16116	2024-02-14	2022-11-10	3.4	3.46	3.31	3.1	0.003	0.64	0.0	0.04	16.35	0.00	2.002	9.99	0.11	1.6	98.4	0.0	0.68	0.85	0.84	2.49	3.1	0.003	0.56	0.0	0.04	16.30	0.00	1.902	15.12	2.00	1.7	98.3	0.0	1.47	0.36	0.86	0.86	2.39	59394	8008	35	0	42	0	0	logfile
✔	8BMQ	16121	2024-02-13	2022-11-10	3.6	3.94	3.58	4.0	0.006	0.76	0.0	0.05	15.48	0.00	2.190	7.37	0.00	5.5	94.5	0.0	-0.07	0.72	0.81	2.32	4.0	0.003	0.51	0.0	0.04	15.57	0.00	2.170	6.55	1.68	4.6	95.4	0.0	0.57	0.29	0.72	0.81	1.76	7784	987	6	0	3	0	0	logfile
✔	8BLE	16108	2024-02-13	2022-11-09	4.0	3.95	4.02	3.7	0.005	0.85	0.0	0.05	13.61	0.00	2.221	8.82	0.00	1.8	98.2	0.0	-0.61	0.82	0.80	—	3.7	0.004	0.61	0.0	0.04	14.34	0.00	2.159	14.82	1.31	1.2	98.8	0.0	0.85	0.35	0.82	0.81	—	54474	7350	28	0	14	0	0	logfile
✔	8F38	28833	2024-02-21	2022-11-09	2.64	2.85	2.70	2.8	0.003	0.60	0.0	0.05	19.17	0.01	2.148	3.68	4.08	2.3	97.4	0.3	0.19	0.71	0.84	3.74	2.8	0.002	0.54	0.0	0.04	16.61	0.00	2.238	4.29	3.02	2.0	97.9	0.1	0.61	0.73	0.75	0.89	3.84	16952	2121	21	0	33	50	0	logfile
✔	8BLC	16106	2024-02-13	2022-11-09	2.7	2.79	2.65	2.7	0.005	0.51	0.0	0.04	17.03	0.00	2.062	11.39	1.44	0.9	99.1	0.0	1.13	0.81	0.83	2.54	2.7	0.002	0.46	0.0	0.04	16.74	0.00	2.049	11.32	0.67	0.9	99.1	0.0	1.42	0.25	0.82	0.86	2.40	55646	7336	42	0	42	1298	0	logfile
✔	8BLF	16109	2024-02-13	2022-11-09	3.9	3.71	3.78	3.5	0.004	0.68	0.0	0.04	13.76	0.00	2.210	9.55	0.00	1.4	98.6	0.0	0.29	0.80	0.79	1.52	3.5	0.003	0.57	0.0	0.04	14.74	0.00	2.188	12.45	1.13	1.2	98.8	0.0	1.20	0.36	0.79	0.77	1.24	54376	7343	28	0	14	0	0	logfile
✔	8F3C	28845	2024-02-20	2022-11-09	3.4	3.72	3.47	3.7	0.004	0.66	0.0	0.05	17.64	0.00	2.029	12.26	1.15	4.2	95.7	0.1	0.01	0.75	0.80	1.89	3.7	0.004	0.61	0.0	0.04	18.81	0.00	1.945	14.41	2.19	5.0	95.0	0.0	0.14	1.13	0.73	0.81	1.39	26819	3172	9	97	1	0	0	logfile
✔	8BKY	16098	2024-02-17	2022-11-09	3.6	3.72	3.43	3.7	0.003	0.59	0.0	0.05	16.82	0.00	1.708	9.74	0.03	5.4	94.6	0.0	-0.58	0.58	0.85	2.68	3.7	0.002	0.54	0.0	0.05	17.35	0.00	2.182	5.07	2.50	6.3	93.7	0.0	-0.29	0.49	0.59	0.86	2.39	68280	8808	24	0	0	0	0	logfile
✔	8BL4	16101	2024-02-21	2022-11-09	3.9	3.96	3.83	3.9	0.018	1.88	5.0	0.10	10.49	0.01	1.199	10.85	0.45	5.9	93.3	0.8	-1.43	0.58	0.67	0.61	3.9	0.004	0.85	0.0	0.05	16.20	0.01	2.039	15.37	4.24	10.1	89.7	0.2	-1.97	1.79	0.62	0.73	0.93	96456	12480	48	0	0	0	0	logfile

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