Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BNZ	16137	2024-02-16	2022-11-14	3.5	3.50	3.32	3.4	0.018	2.27	15.0	0.12	14.41	0.02	2.180	3.88	0.67	5.0	94.9	0.1	-0.42	0.61	0.58	2.40	3.4	0.003	0.69	0.0	0.04	16.17	0.00	2.137	12.14	3.02	5.1	94.9	0.0	-0.41	1.31	0.71	0.75	2.21	14073	1807	6	0	0	0	0	logfile
✔	8HG1	34731	2024-02-16	2022-11-13	2.8	2.33	2.94	2.1	0.004	0.67	0.0	0.04	15.32	0.00	2.100	5.91	0.13	5.0	94.7	0.3	0.19	0.79	0.79	3.89	2.1	0.003	0.60	0.0	0.04	17.51	0.00	2.176	7.16	1.65	4.7	95.1	0.2	0.29	0.42	0.81	0.83	3.37	14155	1642	6	36	2	0	0	logfile
✔	8F5B	28864	2024-02-16	2022-11-13	3.95	4.66	3.92	4.1	0.004	0.72	0.0	0.04	16.73	0.00	1.993	14.24	0.07	6.4	93.6	0.0	0.29	0.71	0.76	0.75	4.1	0.003	0.67	0.0	0.04	15.16	0.00	1.954	13.95	1.56	5.7	94.3	0.0	0.09	0.32	0.71	0.77	0.56	14152	1924	4	0	14	0	0	logfile
✔	8HG0	34730	2024-02-13	2022-11-13	3.51	4.44	3.51	3.7	0.003	0.61	0.0	0.04	17.58	0.00	2.098	7.93	1.15	1.8	98.1	0.1	0.06	0.85	0.80	1.94	3.8	0.003	0.62	0.0	0.04	16.30	0.00	2.030	9.92	3.02	2.8	97.1	0.1	1.02	1.03	0.87	0.88	1.25	6470	790	4	0	4	0	0	logfile
✔	8HFZ	34729	2024-02-23	2022-11-13	2.71	3.70	2.92	3.0	0.007	0.77	1.0	0.05	17.32	0.01	2.088	8.37	1.45	5.2	94.8	0.0	-0.67	0.85	0.77	2.45	3.0	0.011	0.87	1.0	0.05	15.99	0.01	2.067	10.50	2.74	5.5	94.5	0.0	-0.30	0.92	0.88	0.89	2.57	30704	3782	29	0	66	0	0	logfile
✔	8HFY	34728	2024-02-15	2022-11-13	3.21	3.55	3.27	3.5	0.003	0.55	0.0	0.04	15.55	0.00	2.081	4.76	1.44	3.2	96.8	0.0	0.29	0.74	0.83	2.20	3.5	0.004	0.60	0.0	0.04	14.67	0.00	1.956	8.43	2.30	5.2	94.8	0.0	0.38	0.59	0.76	0.87	1.85	6568	789	6	0	10	0	0	logfile
✔	8HFX	34727	2024-02-23	2022-11-13	2.98	3.33	3.29	3.3	0.005	0.74	2.0	0.05	16.11	0.01	2.143	6.12	0.78	3.6	96.4	0.0	-0.61	0.75	0.85	2.85	3.2	0.004	0.60	0.0	0.05	14.47	0.00	2.063	6.70	1.75	3.6	96.4	0.0	0.04	1.00	0.74	0.87	2.71	30807	3776	26	0	69	0	0	logfile
✔	8HFS	34726	2024-02-16	2022-11-12	2.98	3.10	2.88	3.1	0.003	0.65	0.0	0.04	16.84	0.00	2.164	12.21	3.28	7.5	92.5	0.0	0.18	0.67	0.78	0.87	3.1	0.003	0.66	0.0	0.04	17.05	0.00	2.147	12.69	6.44	7.5	92.5	0.0	0.32	0.32	0.68	0.79	0.91	16216	1798	11	0	3	0	0	logfile
✔	8F4X	28858	2024-02-22	2022-11-11	3.01	3.72	3.03	3.4	0.004	0.55	0.0	0.03	15.82	0.00	2.226	5.99	0.00	0.6	99.4	0.0	0.06	0.84	0.83	1.71	3.4	0.003	0.45	0.0	0.03	17.37	0.00	2.267	5.35	1.52	0.1	99.9	0.0	5.20	0.44	0.85	0.85	0.20	32760	4020	60	0	0	0	0	logfile
✔	8F54	28860	2024-02-16	2022-11-11	2.5	2.67	2.56	2.7	0.003	0.45	0.0	0.03	11.59	0.00	2.491	0.57	0.00	0.0	100.0	0.0	3.06	0.68	0.76	3.44	2.7	0.004	0.56	0.0	0.04	18.27	0.01	2.205	4.08	2.61	1.2	98.8	0.0	3.29	1.37	0.67	0.81	3.58	66960	4020	60	0	0	0	33840	logfile
✔	8F53	28859	2024-02-25	2022-11-11	2.93	3.13	2.94	3.1	0.002	0.43	0.0	0.03	11.82	0.00	2.361	1.10	0.00	0.6	99.4	0.0	1.20	0.69	0.77	2.64	3.1	0.004	0.54	0.0	0.03	16.45	0.00	2.249	5.21	6.48	0.6	99.4	0.0	2.66	0.75	0.62	0.82	2.45	51060	3240	60	0	0	0	26460	logfile
✔	8BMW	16126	2024-02-20	2022-11-11	3.5	4.40	—	4.0	0.003	0.54	1.0	0.04	12.90	0.00	2.196	11.99	0.49	6.1	93.8	0.1	0.69	0.90	0.85	0.96	4.0	0.003	0.72	0.0	0.04	15.73	0.00	2.092	18.81	3.69	6.0	93.8	0.1	0.18	0.80	0.90	0.85	0.70	28658	3475	15	48	0	0	0	logfile
✔	8HFQ	34724	2024-02-13	2022-11-11	2.64	2.27	2.58	2.5	0.012	1.31	1.0	0.06	14.44	0.01	1.919	13.48	0.45	1.7	98.2	0.1	-0.95	0.76	0.80	3.80	2.4	0.005	0.81	2.0	0.04	17.04	0.01	1.981	12.84	2.02	1.3	98.7	0.0	1.83	1.61	0.80	0.84	4.13	54193	6851	76	0	54	0	0	logfile
✔	8F4P	28856	2024-02-21	2022-11-11	3.7	3.87	—	3.8	0.004	0.59	0.0	0.05	17.27	0.00	2.197	10.81	0.51	6.6	93.3	0.1	-0.97	0.56	0.76	1.49	3.8	0.003	0.56	0.0	0.04	15.38	0.00	2.198	10.03	2.88	5.8	94.1	0.1	-0.58	0.29	0.52	0.76	1.60	26635	3342	13	0	37	0	0	logfile
✔	8F56	28861	2024-02-16	2022-11-11	2.98	3.18	3.09	3.2	0.004	0.56	0.0	0.04	9.89	0.00	2.200	9.91	2.64	2.2	97.8	0.0	1.81	0.68	0.75	1.96	3.2	0.004	0.61	0.0	0.04	16.14	0.00	2.131	10.55	2.88	1.7	98.3	0.0	1.63	1.29	0.71	0.86	2.51	15631	2039	2	0	0	0	0	logfile
✔	8F4N	28855	2024-02-16	2022-11-11	2.95	3.15	3.04	3.2	0.004	0.55	0.0	0.04	9.96	0.00	2.278	8.28	2.12	1.9	98.1	0.0	2.00	0.72	0.80	3.23	3.2	0.003	0.55	0.0	0.04	15.87	0.00	2.063	9.40	2.60	1.6	98.4	0.0	1.87	1.25	0.65	0.83	2.94	15574	2043	2	0	0	0	0	logfile
✔	8F4R	28857	2024-02-19	2022-11-11	3.06	3.36	3.18	3.3	0.004	0.56	0.0	0.04	11.50	0.00	2.212	7.54	3.22	1.2	98.7	0.0	1.85	0.75	0.81	2.80	3.3	0.003	0.52	0.0	0.04	14.44	0.00	2.078	8.03	2.55	1.1	98.8	0.0	1.98	1.23	0.72	0.86	2.51	23675	3097	4	0	1	0	0	logfile
✔	8HFC	34717	2024-02-13	2022-11-10	3.5	3.66	3.42	3.7	0.007	0.67	0.0	0.05	18.01	0.00	2.164	9.17	3.88	6.5	93.3	0.2	-2.90	0.68	0.82	2.21	3.7	0.002	0.59	0.0	0.04	18.02	0.00	2.189	5.52	2.97	4.0	96.0	0.0	0.17	1.19	0.64	0.80	2.11	4007	498	3	0	3	0	0	logfile
✔	8F3E	28848	2024-02-19	2022-11-10	3.09	3.38	3.21	3.4	0.003	0.52	0.0	0.04	9.85	0.00	2.213	7.20	2.91	1.9	98.1	0.0	1.77	0.61	0.64	1.05	3.4	0.003	0.60	0.0	0.04	15.60	0.00	2.082	10.36	2.95	1.7	98.3	0.0	1.66	1.75	0.63	0.80	1.91	23627	3095	3	0	0	0	0	logfile
✔	8F4B	28854	2024-02-14	2022-11-10	3.27	3.47	3.40	3.5	0.014	1.82	0.0	0.09	12.70	0.00	2.278	1.25	0.10	5.0	95.0	0.0	-2.97	0.50	0.68	1.95	3.5	0.003	0.56	0.0	0.04	15.33	0.00	2.202	5.58	2.20	2.4	97.6	0.0	0.59	1.23	0.63	0.81	1.48	9487	1198	2	0	2	0	0	logfile

• ← previous
• Page 106 of 588
• next →