Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HH1	34748	2024-02-19	2022-11-16	2.9	3.08	2.86	3.0	0.004	0.66	4.0	0.05	14.40	0.00	1.081	4.29	1.01	1.7	98.3	0.0	1.35	0.81	0.90	3.97	3.0	0.005	0.56	0.0	0.05	16.04	0.00	1.865	4.92	1.79	2.5	97.5	0.0	0.96	0.43	0.82	0.93	3.76	24280	3129	13	0	12	0	0	logfile
✔	8BPC	16149	2024-02-14	2022-11-16	2.8	3.02	2.96	3.0	0.004	0.69	0.0	0.05	17.59	0.00	1.557	9.27	3.18	3.0	97.0	0.0	0.55	0.77	0.79	2.55	3.0	0.003	0.53	0.0	0.04	17.91	0.00	1.982	7.94	2.63	2.4	97.6	0.0	1.36	1.63	0.76	0.83	2.83	8433	1030	7	0	6	44	0	logfile
✔	8HH9	34756	2024-02-19	2022-11-16	3.6	3.44	3.55	3.4	0.004	0.67	0.0	0.05	13.99	0.00	1.830	6.96	0.19	2.9	97.0	0.1	0.73	0.82	0.87	2.86	3.4	0.005	0.59	0.0	0.04	15.26	0.00	1.902	6.82	2.30	4.0	96.0	0.0	0.42	0.29	0.83	0.88	2.23	24250	3129	13	0	12	0	0	logfile
✔	8HHA	34757	2024-02-19	2022-11-16	3.4	3.24	3.42	3.4	0.003	0.60	0.0	0.04	14.06	0.00	1.970	6.08	0.00	3.0	96.9	0.0	0.84	0.78	0.87	3.10	3.4	0.003	0.54	0.0	0.04	15.39	0.00	1.875	6.78	1.40	3.8	96.2	0.0	0.60	0.29	0.79	0.88	2.69	24245	3129	12	0	11	0	0	logfile
✔	8HH3	34750	2024-02-19	2022-11-16	4.3	3.10	3.07	3.1	0.004	0.64	3.0	0.05	14.21	0.00	1.690	4.12	0.51	2.1	97.9	0.1	0.96	0.73	0.80	—	3.1	0.007	0.67	0.0	0.05	14.57	0.01	1.869	6.22	0.04	3.1	96.8	0.1	0.52	0.37	0.75	0.81	—	24281	3129	13	0	13	0	0	logfile
✔	8F66	28876	2024-02-24	2022-11-16	2.28	3.24	2.38	2.9	0.004	0.74	0.0	0.05	19.00	0.00	2.269	6.86	3.94	3.8	95.5	0.7	0.82	0.82	0.79	4.06	2.9	0.005	0.61	0.0	0.05	17.57	0.00	2.205	4.30	1.44	3.4	96.1	0.5	1.58	0.88	0.85	0.94	3.54	46508	6006	28	0	0	0	0	logfile
✔	8HHB	34758	2024-02-19	2022-11-16	3.5	3.08	3.37	3.3	0.004	0.63	0.0	0.05	14.33	0.00	1.908	5.81	0.00	2.9	97.1	0.0	0.99	0.78	0.87	3.11	3.3	0.006	0.64	0.0	0.05	15.47	0.00	1.832	6.04	1.01	3.8	96.2	0.0	0.67	0.92	0.79	0.88	2.94	24245	3129	12	0	11	0	0	logfile
✔	8HH2	34749	2024-02-19	2022-11-16	3.0	3.10	3.07	3.1	0.004	0.64	3.0	0.05	14.21	0.00	1.690	4.12	0.51	2.1	97.9	0.1	0.96	0.79	0.89	3.34	3.1	0.002	0.51	0.0	0.04	15.63	0.00	1.953	5.35	1.64	2.1	97.9	0.0	1.09	0.39	0.80	0.91	2.87	24281	3129	13	0	13	0	0	logfile
✔	8BoN	16144	2024-02-19	2022-11-15	3.2	3.14	3.12	3.1	0.004	0.57	0.0	0.04	13.29	0.00	2.145	5.32	0.00	3.0	97.0	0.0	0.15	0.76	0.79	2.78	3.1	0.003	0.53	0.0	0.04	13.74	0.00	2.202	6.08	1.00	3.5	96.5	0.0	0.17	0.25	0.76	0.78	2.43	25930	3246	22	0	52	0	0	logfile
✔	8HGM	34742	2024-02-13	2022-11-15	3.4	4.02	3.45	3.8	0.004	0.59	0.0	0.04	13.09	0.00	2.180	7.30	0.00	4.3	95.7	0.0	0.29	0.84	0.85	2.62	3.8	0.003	0.64	0.0	0.04	14.80	0.00	2.187	8.13	2.60	3.8	96.2	0.0	0.11	0.43	0.81	0.82	2.62	4886	632	4	0	2	0	0	logfile
✔	8HGL	34741	2024-02-22	2022-11-15	2.9	3.56	2.97	3.2	0.006	0.67	0.0	0.05	14.18	0.00	2.181	7.33	0.00	5.3	94.7	0.0	-0.39	0.81	0.77	2.77	3.2	0.003	0.60	0.0	0.04	14.62	0.00	2.164	8.23	1.40	4.4	95.6	0.0	0.00	0.56	0.85	0.85	2.70	34170	4317	24	0	60	0	0	logfile
✔	8HGP	34745	2024-02-14	2022-11-15	4.53	2.79	4.47	2.3	0.003	0.68	0.0	0.05	10.20	0.01	2.270	3.98	0.20	8.5	91.5	0.0	-3.92	0.66	0.64	—	2.0	0.003	0.74	0.0	0.05	11.10	0.00	2.181	13.95	0.10	10.0	90.0	0.0	-2.37	0.88	0.69	0.67	—	9169	1172	6	0	8	0	0	logfile
✔	8HGS	34746	2024-02-17	2022-11-15	3.81	2.51	3.80	3.8	0.004	0.75	0.0	0.06	13.68	0.01	2.368	3.29	0.00	8.1	91.9	0.0	-3.50	0.66	0.62	1.35	2.2	0.005	0.84	0.0	0.05	14.47	0.00	2.149	13.42	2.14	9.3	90.5	0.2	-1.67	1.45	0.71	0.70	2.07	10080	1280	8	0	12	0	0	logfile
✔	8HGo	34744	2024-02-14	2022-11-15	3.31	2.35	3.32	2.2	0.004	0.71	0.0	0.05	10.13	0.01	2.284	4.45	0.00	8.0	91.8	0.2	-3.74	0.71	0.68	2.06	2.0	0.004	0.76	0.0	0.05	13.77	0.00	2.165	13.25	2.15	8.2	91.8	0.0	-2.34	0.81	0.74	0.75	3.01	9227	1178	6	0	8	0	0	logfile
✔	8F5Z	28869	2024-02-15	2022-11-15	3.2	2.36	—	2.1	0.003	0.59	0.0	0.04	17.24	0.01	2.234	9.25	0.47	2.5	97.5	0.0	0.05	0.75	0.77	1.85	2.1	0.003	0.62	0.0	0.04	17.69	0.00	2.222	11.04	5.30	2.7	97.3	0.0	0.22	0.33	0.75	0.76	1.77	13598	1724	4	0	2	0	0	logfile
✔	8Bo2	16138	2024-02-16	2022-11-14	3.1	3.79	3.14	3.5	0.017	1.94	10.0	0.11	14.14	0.02	2.505	4.29	0.47	6.7	93.2	0.1	-0.67	0.59	0.53	2.30	3.5	0.003	0.69	0.0	0.04	15.76	0.00	2.099	14.32	2.15	5.6	94.2	0.2	-0.57	1.10	0.77	0.80	1.51	14037	1803	6	0	0	0	0	logfile
✔	8BNU	16135	2024-02-20	2022-11-14	3.55	3.69	3.51	3.6	0.006	0.74	0.0	0.05	13.70	0.01	2.110	13.64	0.18	8.2	91.4	0.4	-0.84	0.84	0.83	1.95	3.6	0.003	0.63	0.0	0.04	15.56	0.00	2.119	10.90	2.40	6.3	93.4	0.3	-0.19	2.54	0.86	0.85	1.24	16913	2292	4	0	0	0	0	logfile
✔	8BNZ	16137	2024-02-16	2022-11-14	3.5	3.50	3.32	3.4	0.018	2.27	15.0	0.12	14.41	0.02	2.180	3.88	0.67	5.0	94.9	0.1	-0.42	0.61	0.58	2.40	3.4	0.003	0.69	0.0	0.04	16.17	0.00	2.137	12.14	3.02	5.1	94.9	0.0	-0.41	1.31	0.71	0.75	2.21	14073	1807	6	0	0	0	0	logfile
✔	8HG7	34737	2024-02-13	2022-11-14	3.1	2.83	3.04	3.0	0.017	2.20	2.0	0.09	14.42	0.01	2.121	6.92	2.19	4.6	95.4	0.0	-2.67	0.56	0.81	4.34	3.0	0.002	0.59	0.0	0.04	15.49	0.00	2.215	7.24	1.79	1.5	98.5	0.0	1.53	1.17	0.65	0.84	3.58	4808	619	3	0	3	2	0	logfile
✔	8HGG	34738	2024-02-19	2022-11-14	3.64	3.02	3.51	3.5	0.003	0.62	0.0	0.05	11.94	0.01	2.296	4.09	5.46	3.4	96.6	0.0	-1.38	0.66	0.66	2.36	3.4	0.004	0.75	1.0	0.05	14.50	0.00	2.136	9.45	3.24	5.9	94.1	0.0	-1.14	0.59	0.68	0.71	2.41	25404	3238	6	0	2	0	0	logfile

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