Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HHL	34803	2024-02-13	2022-11-16	2.87	3.25	2.89	3.1	0.004	0.50	0.0	0.04	22.36	0.00	2.126	6.49	2.29	1.4	98.6	0.0	2.28	0.77	0.81	3.37	3.1	0.005	0.58	0.0	0.04	22.87	0.00	1.910	7.58	3.33	1.5	98.5	0.0	2.94	2.37	0.83	0.86	3.67	6971	592	6	111	4	0	0	logfile
✔	8HHB	34758	2024-02-19	2022-11-16	3.5	3.08	3.37	3.3	0.004	0.63	0.0	0.05	14.33	0.00	1.908	5.81	0.00	2.9	97.1	0.0	0.99	0.78	0.87	3.11	3.3	0.006	0.64	0.0	0.05	15.47	0.00	1.832	6.04	1.01	3.8	96.2	0.0	0.67	0.92	0.79	0.88	2.94	24245	3129	12	0	11	0	0	logfile
✔	8HH3	34750	2024-02-19	2022-11-16	4.3	3.10	3.07	3.1	0.004	0.64	3.0	0.05	14.21	0.00	1.690	4.12	0.51	2.1	97.9	0.1	0.96	0.73	0.80	—	3.1	0.007	0.67	0.0	0.05	14.57	0.01	1.869	6.22	0.04	3.1	96.8	0.1	0.52	0.37	0.75	0.81	—	24281	3129	13	0	13	0	0	logfile
✔	8HH8	34755	2024-02-19	2022-11-16	2.8	3.21	2.83	3.0	0.003	0.56	0.0	0.04	14.03	0.00	1.983	3.76	0.08	2.2	97.8	0.0	1.14	0.84	0.90	3.75	3.0	0.002	0.49	0.0	0.04	15.22	0.00	1.931	4.43	0.82	2.6	97.4	0.0	1.30	0.36	0.86	0.93	3.34	24250	3129	13	0	12	0	0	logfile
✔	8HH1	34748	2024-02-19	2022-11-16	2.9	3.08	2.86	3.0	0.004	0.66	4.0	0.05	14.40	0.00	1.081	4.29	1.01	1.7	98.3	0.0	1.35	0.81	0.90	3.97	3.0	0.005	0.56	0.0	0.05	16.04	0.00	1.865	4.92	1.79	2.5	97.5	0.0	0.96	0.43	0.82	0.93	3.76	24280	3129	13	0	12	0	0	logfile
✔	8HH7	34754	2024-02-19	2022-11-16	2.5	3.02	2.62	2.8	0.004	0.59	0.0	0.05	13.52	0.00	1.560	3.12	0.04	1.9	98.1	0.0	1.55	0.85	0.92	4.56	2.8	0.003	0.50	0.0	0.04	14.58	0.00	1.955	3.37	0.70	2.2	97.8	0.0	1.55	0.91	0.84	0.93	3.94	24250	3129	13	0	12	0	0	logfile
✔	8BPE	16150	2024-02-19	2022-11-16	3.63	3.94	3.36	3.4	0.009	1.07	0.0	0.08	13.16	0.01	2.283	5.43	0.00	8.6	91.4	0.0	-1.45	0.82	0.70	1.61	3.4	0.005	0.81	0.0	0.05	15.44	0.00	2.078	15.37	2.99	8.9	91.0	0.1	-1.33	1.07	0.89	0.81	1.82	24195	3104	30	0	14	0	0	logfile
✔	8BPF	16151	2024-02-17	2022-11-16	3.5	4.03	3.35	3.4	0.006	0.85	0.0	0.06	13.40	0.01	2.267	6.33	0.00	9.5	90.5	0.0	-1.72	0.86	0.77	2.18	3.5	0.003	0.67	0.0	0.04	15.26	0.00	2.183	11.23	2.65	7.7	92.2	0.1	-0.98	1.74	0.89	0.80	1.88	18593	2370	23	0	12	0	0	logfile
✔	8BoN	16144	2024-02-19	2022-11-15	3.2	3.14	3.12	3.1	0.004	0.57	0.0	0.04	13.29	0.00	2.145	5.32	0.00	3.0	97.0	0.0	0.15	0.76	0.79	2.78	3.1	0.003	0.53	0.0	0.04	13.74	0.00	2.202	6.08	1.00	3.5	96.5	0.0	0.17	0.25	0.76	0.78	2.43	25930	3246	22	0	52	0	0	logfile
✔	8HGM	34742	2024-02-13	2022-11-15	3.4	4.02	3.45	3.8	0.004	0.59	0.0	0.04	13.09	0.00	2.180	7.30	0.00	4.3	95.7	0.0	0.29	0.84	0.85	2.62	3.8	0.003	0.64	0.0	0.04	14.80	0.00	2.187	8.13	2.60	3.8	96.2	0.0	0.11	0.43	0.81	0.82	2.62	4886	632	4	0	2	0	0	logfile
✔	8F5Z	28869	2024-02-15	2022-11-15	3.2	2.36	—	2.1	0.003	0.59	0.0	0.04	17.24	0.01	2.234	9.25	0.47	2.5	97.5	0.0	0.05	0.75	0.77	1.85	2.1	0.003	0.62	0.0	0.04	17.69	0.00	2.222	11.04	5.30	2.7	97.3	0.0	0.22	0.33	0.75	0.76	1.77	13598	1724	4	0	2	0	0	logfile
✔	8HGL	34741	2024-02-22	2022-11-15	2.9	3.56	2.97	3.2	0.006	0.67	0.0	0.05	14.18	0.00	2.181	7.33	0.00	5.3	94.7	0.0	-0.39	0.81	0.77	2.77	3.2	0.003	0.60	0.0	0.04	14.62	0.00	2.164	8.23	1.40	4.4	95.6	0.0	0.00	0.56	0.85	0.85	2.70	34170	4317	24	0	60	0	0	logfile
✔	8HGo	34744	2024-02-14	2022-11-15	3.31	2.35	3.32	2.2	0.004	0.71	0.0	0.05	10.13	0.01	2.284	4.45	0.00	8.0	91.8	0.2	-3.74	0.71	0.68	2.06	2.0	0.004	0.76	0.0	0.05	13.77	0.00	2.165	13.25	2.15	8.2	91.8	0.0	-2.34	0.81	0.74	0.75	3.01	9227	1178	6	0	8	0	0	logfile
✔	8HGS	34746	2024-02-17	2022-11-15	3.81	2.51	3.80	3.8	0.004	0.75	0.0	0.06	13.68	0.01	2.368	3.29	0.00	8.1	91.9	0.0	-3.50	0.66	0.62	1.35	2.2	0.005	0.84	0.0	0.05	14.47	0.00	2.149	13.42	2.14	9.3	90.5	0.2	-1.67	1.45	0.71	0.70	2.07	10080	1280	8	0	12	0	0	logfile
✔	8HGP	34745	2024-02-14	2022-11-15	4.53	2.79	4.47	2.3	0.003	0.68	0.0	0.05	10.20	0.01	2.270	3.98	0.20	8.5	91.5	0.0	-3.92	0.66	0.64	—	2.0	0.003	0.74	0.0	0.05	11.10	0.00	2.181	13.95	0.10	10.0	90.0	0.0	-2.37	0.88	0.69	0.67	—	9169	1172	6	0	8	0	0	logfile
✔	8HG7	34737	2024-02-13	2022-11-14	3.1	2.83	3.04	3.0	0.017	2.20	2.0	0.09	14.42	0.01	2.121	6.92	2.19	4.6	95.4	0.0	-2.67	0.56	0.81	4.34	3.0	0.002	0.59	0.0	0.04	15.49	0.00	2.215	7.24	1.79	1.5	98.5	0.0	1.53	1.17	0.65	0.84	3.58	4808	619	3	0	3	2	0	logfile
✔	8BNU	16135	2024-02-20	2022-11-14	3.55	3.69	3.51	3.6	0.006	0.74	0.0	0.05	13.70	0.01	2.110	13.64	0.18	8.2	91.4	0.4	-0.84	0.84	0.83	1.95	3.6	0.003	0.63	0.0	0.04	15.56	0.00	2.119	10.90	2.40	6.3	93.4	0.3	-0.19	2.54	0.86	0.85	1.24	16913	2292	4	0	0	0	0	logfile
✔	8BNZ	16137	2024-02-16	2022-11-14	3.5	3.50	3.32	3.4	0.018	2.27	15.0	0.12	14.41	0.02	2.180	3.88	0.67	5.0	94.9	0.1	-0.42	0.61	0.58	2.40	3.4	0.003	0.69	0.0	0.04	16.17	0.00	2.137	12.14	3.02	5.1	94.9	0.0	-0.41	1.31	0.71	0.75	2.21	14073	1807	6	0	0	0	0	logfile
✔	8HGH	34739	2024-02-19	2022-11-14	4.16	3.79	4.05	3.7	0.003	0.62	2.0	0.05	12.05	0.01	2.298	3.92	5.83	3.4	96.6	0.0	-1.78	0.76	0.69	—	3.7	0.005	0.75	0.0	0.05	12.87	0.00	2.076	14.95	0.00	6.9	93.1	0.0	-1.12	0.99	0.79	0.75	—	25512	3266	6	0	2	0	0	logfile
✔	8HGG	34738	2024-02-19	2022-11-14	3.64	3.02	3.51	3.5	0.003	0.62	0.0	0.05	11.94	0.01	2.296	4.09	5.46	3.4	96.6	0.0	-1.38	0.66	0.66	2.36	3.4	0.004	0.75	1.0	0.05	14.50	0.00	2.136	9.45	3.24	5.9	94.1	0.0	-1.14	0.59	0.68	0.71	2.41	25404	3238	6	0	2	0	0	logfile

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