Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BPR	16164	2024-02-14	2022-11-17	3.65	4.06	3.85	3.9	0.004	0.51	0.0	0.04	17.51	0.00	2.072	3.39	0.66	3.0	97.0	0.0	0.86	0.78	0.76	1.72	3.9	0.003	0.62	0.0	0.04	18.66	0.00	1.945	7.17	2.48	3.5	96.5	0.0	1.50	3.76	0.81	0.82	1.60	10055	1401	14	44	7	0	0	logfile
✔	8F6Q	28888	2024-02-15	2022-11-17	3.6	3.83	3.72	3.9	0.006	0.72	0.0	0.04	12.98	0.00	2.109	20.44	0.00	2.3	97.7	0.0	0.52	0.75	0.82	0.69	3.9	0.003	0.55	0.0	0.03	16.59	0.00	2.256	12.65	2.11	2.0	98.0	0.0	4.17	0.69	0.73	0.81	1.17	12352	1592	8	0	0	0	0	logfile
✔	8F6R	28889	2024-02-14	2022-11-17	4.0	4.17	3.97	4.1	0.005	0.75	0.0	0.04	12.99	0.00	1.997	17.80	0.00	1.4	98.6	0.0	-1.46	0.77	0.81	—	4.1	0.003	0.72	0.0	0.04	16.31	0.00	2.122	13.74	1.33	1.4	98.6	0.0	3.00	1.34	0.77	0.81	—	10290	1314	6	0	0	0	0	logfile
✔	8HH3	34750	2024-02-19	2022-11-16	4.3	3.10	3.07	3.1	0.004	0.64	3.0	0.05	14.21	0.00	1.690	4.12	0.51	2.1	97.9	0.1	0.96	0.73	0.80	—	3.1	0.007	0.67	0.0	0.05	14.57	0.01	1.869	6.22	0.04	3.1	96.8	0.1	0.52	0.37	0.75	0.81	—	24281	3129	13	0	13	0	0	logfile
✔	8HH8	34755	2024-02-19	2022-11-16	2.8	3.21	2.83	3.0	0.003	0.56	0.0	0.04	14.03	0.00	1.983	3.76	0.08	2.2	97.8	0.0	1.14	0.84	0.90	3.75	3.0	0.002	0.49	0.0	0.04	15.22	0.00	1.931	4.43	0.82	2.6	97.4	0.0	1.30	0.36	0.86	0.93	3.34	24250	3129	13	0	12	0	0	logfile
✔	8HH2	34749	2024-02-19	2022-11-16	3.0	3.10	3.07	3.1	0.004	0.64	3.0	0.05	14.21	0.00	1.690	4.12	0.51	2.1	97.9	0.1	0.96	0.79	0.89	3.34	3.1	0.002	0.51	0.0	0.04	15.63	0.00	1.953	5.35	1.64	2.1	97.9	0.0	1.09	0.39	0.80	0.91	2.87	24281	3129	13	0	13	0	0	logfile
✔	8HH9	34756	2024-02-19	2022-11-16	3.6	3.44	3.55	3.4	0.004	0.67	0.0	0.05	13.99	0.00	1.830	6.96	0.19	2.9	97.0	0.1	0.73	0.82	0.87	2.86	3.4	0.005	0.59	0.0	0.04	15.26	0.00	1.902	6.82	2.30	4.0	96.0	0.0	0.42	0.29	0.83	0.88	2.23	24250	3129	13	0	12	0	0	logfile
✔	8HH7	34754	2024-02-19	2022-11-16	2.5	3.02	2.62	2.8	0.004	0.59	0.0	0.05	13.52	0.00	1.560	3.12	0.04	1.9	98.1	0.0	1.55	0.85	0.92	4.56	2.8	0.003	0.50	0.0	0.04	14.58	0.00	1.955	3.37	0.70	2.2	97.8	0.0	1.55	0.91	0.84	0.93	3.94	24250	3129	13	0	12	0	0	logfile
✔	8F6A	28878	2024-02-21	2022-11-16	2.06	3.05	2.14	2.7	0.004	0.69	0.0	0.05	17.55	0.01	2.320	4.08	3.21	3.1	96.9	0.0	1.20	0.80	0.76	4.28	2.7	0.005	0.63	0.0	0.04	16.28	0.00	1.429	2.59	0.99	4.1	95.9	0.0	1.45	0.85	0.81	0.91	4.64	93058	5950	28	0	0	0	47110	logfile
✔	8HHA	34757	2024-02-19	2022-11-16	3.4	3.24	3.42	3.4	0.003	0.60	0.0	0.04	14.06	0.00	1.970	6.08	0.00	3.0	96.9	0.0	0.84	0.78	0.87	3.10	3.4	0.003	0.54	0.0	0.04	15.39	0.00	1.875	6.78	1.40	3.8	96.2	0.0	0.60	0.29	0.79	0.88	2.69	24245	3129	12	0	11	0	0	logfile
✔	8HH1	34748	2024-02-19	2022-11-16	2.9	3.08	2.86	3.0	0.004	0.66	4.0	0.05	14.40	0.00	1.081	4.29	1.01	1.7	98.3	0.0	1.35	0.81	0.90	3.97	3.0	0.005	0.56	0.0	0.05	16.04	0.00	1.865	4.92	1.79	2.5	97.5	0.0	0.96	0.43	0.82	0.93	3.76	24280	3129	13	0	12	0	0	logfile
✔	8HHB	34758	2024-02-19	2022-11-16	3.5	3.08	3.37	3.3	0.004	0.63	0.0	0.05	14.33	0.00	1.908	5.81	0.00	2.9	97.1	0.0	0.99	0.78	0.87	3.11	3.3	0.006	0.64	0.0	0.05	15.47	0.00	1.832	6.04	1.01	3.8	96.2	0.0	0.67	0.92	0.79	0.88	2.94	24245	3129	12	0	11	0	0	logfile
✔	8HHC	34760	2024-02-19	2022-11-16	3.3	3.40	3.29	3.3	0.005	0.65	0.0	0.05	13.66	0.00	1.776	5.46	0.04	2.9	97.1	0.0	0.83	0.82	0.88	3.74	3.3	0.002	0.49	0.0	0.04	14.63	0.00	1.988	5.48	1.05	2.2	97.8	0.0	1.55	0.92	0.82	0.88	2.38	24249	3129	12	0	11	0	0	logfile
✔	8HH5	34752	2024-02-19	2022-11-16	2.9	3.05	3.18	3.2	0.004	0.60	0.0	0.05	14.43	0.00	1.881	5.66	0.00	2.2	97.8	0.0	0.95	0.77	0.88	3.47	3.2	0.006	0.64	0.0	0.05	15.61	0.00	1.844	6.44	1.44	3.3	96.7	0.0	0.97	0.33	0.77	0.90	3.21	24277	3129	13	0	13	0	0	logfile
✔	8F6K	28886	2024-02-17	2022-11-16	3.46	3.70	3.47	3.7	0.002	0.50	0.0	0.03	14.25	0.00	1.909	10.84	0.00	6.0	93.5	0.5	-0.45	0.53	0.73	2.16	3.7	0.003	0.56	0.0	0.03	15.93	0.00	1.834	12.38	1.54	7.2	92.4	0.4	0.83	0.50	0.50	0.73	2.18	17298	1132	8	0	4	0	8586	logfile
✔	8F6i	28884	2024-02-14	2022-11-16	4.03	4.27	4.04	4.2	0.002	0.50	0.0	0.04	13.67	0.00	2.070	7.30	0.00	5.0	94.9	0.2	0.18	0.76	0.80	—	4.2	0.005	0.68	0.0	0.04	13.96	0.00	1.953	13.20	0.18	6.7	93.2	0.1	-0.02	0.44	0.77	0.81	—	10367	1351	8	0	6	0	0	logfile
✔	8F6F	28882	2024-02-14	2022-11-16	3.6	3.88	3.63	3.9	0.003	0.52	0.0	0.04	13.45	0.00	2.011	6.45	0.09	4.6	95.3	0.2	-0.37	0.75	0.82	2.79	3.9	0.004	0.68	0.0	0.04	15.68	0.00	1.929	8.93	2.92	5.7	94.1	0.2	0.00	1.18	0.73	0.82	2.49	10344	1344	8	0	6	0	0	logfile
✔	8F6J	28885	2024-02-14	2022-11-16	3.7	3.93	3.62	3.9	0.003	0.51	0.0	0.04	14.39	0.01	2.084	6.66	0.00	6.0	93.6	0.4	-0.50	0.73	0.81	1.81	3.9	0.003	0.62	0.0	0.04	16.26	0.00	2.045	9.87	2.27	6.8	92.8	0.4	-0.52	0.43	0.72	0.78	1.69	10472	1366	8	0	8	0	0	logfile
✔	8F6H	28883	2024-02-18	2022-11-16	3.9	4.17	3.97	4.1	0.002	0.47	0.0	0.04	13.60	0.00	1.887	6.02	0.00	5.9	94.0	0.2	-0.05	0.72	0.79	2.38	4.1	0.003	0.52	0.0	0.04	15.28	0.00	1.846	8.33	1.14	5.6	94.2	0.2	0.28	0.47	0.72	0.80	2.25	20768	1358	8	0	6	0	10347	logfile
✔	8F66	28876	2024-02-24	2022-11-16	2.28	3.24	2.38	2.9	0.004	0.74	0.0	0.05	19.00	0.00	2.269	6.86	3.94	3.8	95.5	0.7	0.82	0.82	0.79	4.06	2.9	0.005	0.61	0.0	0.05	17.57	0.00	2.205	4.30	1.44	3.4	96.1	0.5	1.58	0.88	0.85	0.94	3.54	46508	6006	28	0	0	0	0	logfile

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