Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Hi1	34809	2024-02-18	2022-11-18	3.09	3.43	3.24	3.4	0.005	0.69	0.0	0.04	17.86	0.00	1.947	11.15	0.00	9.4	90.6	0.0	-6.18	0.58	0.73	2.49	3.4	0.003	0.61	0.0	0.04	18.98	0.00	2.063	8.62	1.92	7.3	92.7	0.0	-2.26	1.14	0.58	0.76	2.27	20998	1234	8	57	0	0	10143	logfile
✔	8Hi4	34812	2024-02-17	2022-11-18	3.35	3.51	3.32	3.5	0.006	0.87	0.0	0.06	15.95	0.00	2.231	9.91	0.35	8.1	91.9	0.0	-2.10	0.65	0.63	0.65	3.6	0.002	0.63	0.0	0.04	17.25	0.00	2.126	10.05	3.76	6.7	93.3	0.0	-1.15	0.53	0.68	0.70	1.01	17432	2368	2	0	0	0	0	logfile
✔	8F79	28898	2024-02-21	2022-11-18	3.15	3.44	3.21	3.4	0.005	0.89	0.0	0.05	17.08	0.01	2.263	11.61	0.39	4.7	95.3	0.0	-1.17	0.61	0.69	1.33	3.3	0.005	0.65	0.0	0.04	16.58	0.00	2.119	15.09	1.75	4.4	95.6	0.0	-0.65	1.65	0.66	0.81	1.51	32333	3882	18	0	17	6	0	logfile
✔	8F7B	28901	2024-02-16	2022-11-18	3.15	3.53	3.17	3.5	0.005	0.79	0.0	0.04	18.68	0.00	2.263	5.78	0.23	2.4	97.6	0.0	1.06	0.63	0.79	2.19	3.5	0.003	0.50	0.0	0.04	16.32	0.00	2.221	7.76	2.27	2.2	97.8	0.0	2.17	1.12	0.60	0.80	2.11	16166	1894	18	0	17	6	0	logfile
✔	8F77	28897	2024-02-19	2022-11-18	3.15	3.43	3.19	3.4	0.005	0.75	0.0	0.04	16.49	0.01	2.206	8.39	0.28	3.8	96.2	0.0	-0.68	0.63	0.74	1.49	3.4	0.003	0.63	0.0	0.04	16.73	0.00	2.091	13.55	1.78	3.6	96.4	0.0	-0.09	1.32	0.67	0.82	1.48	25678	3072	18	0	15	6	0	logfile
✔	8F7A	28899	2024-02-15	2022-11-18	3.78	4.00	3.84	3.9	0.005	0.69	0.0	0.04	15.31	0.00	1.085	12.19	11.80	5.9	93.9	0.1	-2.21	0.69	0.72	0.70	3.9	0.003	0.79	0.0	0.04	16.18	0.00	2.026	12.78	3.26	4.0	96.0	0.0	-0.12	1.08	0.74	0.82	1.42	6742	852	2	0	2	0	0	logfile
✔	8F75	28895	2024-02-14	2022-11-18	4.0	4.26	4.21	4.1	0.004	0.80	0.0	0.05	15.36	0.01	2.258	12.37	0.62	5.6	94.4	0.0	-2.96	0.70	0.68	—	4.0	0.003	0.81	0.0	0.05	17.26	0.00	2.173	22.43	3.34	5.3	94.7	0.0	-2.59	2.65	0.72	0.71	—	9899	1218	3	0	0	0	0	logfile
✔	8F74	28894	2024-02-16	2022-11-18	3.1	3.55	3.19	3.5	0.005	0.72	0.0	0.04	17.29	0.00	2.206	5.81	0.06	2.6	97.4	0.0	0.91	0.63	0.80	1.72	3.5	0.003	0.51	0.0	0.04	16.35	0.00	2.227	8.59	2.98	2.8	97.2	0.0	1.91	1.13	0.62	0.81	1.44	16008	1881	18	0	15	6	0	logfile
✔	8F7J	28905	2024-02-13	2022-11-18	4.32	4.45	4.63	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.003	0.68	0.0	0.04	14.09	0.01	2.143	18.06	0.00	5.7	94.3	0.0	-2.85	2.92	0.44	0.43	—	3321	407	1	0	0	0	0	logfile
✔	8F7C	28902	2024-02-16	2022-11-18	3.92	4.16	3.93	4.2	0.002	0.52	0.0	0.04	13.95	0.00	1.675	4.95	0.00	3.2	96.8	0.0	0.02	0.64	0.82	2.00	4.2	0.003	0.60	0.0	0.04	15.93	0.00	2.167	4.54	1.97	2.9	97.1	0.0	1.42	0.41	0.66	0.82	1.76	15925	2009	7	0	0	0	0	logfile
✔	8F7K	28906	2024-02-21	2022-11-18	1.94	2.95	2.02	2.5	0.005	0.68	0.0	0.05	12.07	0.02	2.237	3.21	1.39	1.4	98.6	0.0	1.42	0.81	0.78	5.11	2.5	0.002	0.49	0.0	0.04	13.76	0.00	2.144	2.71	0.42	2.4	97.6	0.0	1.94	0.52	0.78	0.89	4.56	95242	6048	42	0	14	0	47978	logfile
✔	8F7D	28903	2024-02-13	2022-11-18	4.2	4.28	4.25	4.2	0.005	1.00	0.0	0.05	15.55	0.01	2.264	19.74	0.53	6.7	93.3	0.0	-2.71	0.60	0.60	—	4.2	0.003	0.81	0.0	0.05	13.45	0.00	2.149	23.01	0.00	5.9	94.1	0.0	-2.78	1.95	0.65	0.68	—	6578	811	2	0	0	0	0	logfile
✔	8F7E	28904	2024-02-13	2022-11-18	4.13	4.21	4.35	4.1	0.005	0.98	0.0	0.05	15.17	0.01	2.266	14.09	0.53	7.4	92.6	0.0	-3.38	0.55	0.57	—	4.1	0.004	0.87	0.0	0.05	13.79	0.01	2.117	24.00	0.00	7.8	92.2	0.0	-2.99	2.05	0.58	0.63	—	6642	814	2	0	0	0	0	logfile
✔	8F6X	28891	2024-02-19	2022-11-17	3.25	4.36	3.29	3.8	0.002	0.51	0.0	0.04	13.80	0.00	2.181	8.90	0.06	5.7	94.3	0.1	-0.91	0.84	0.73	2.65	3.8	0.002	0.56	0.0	0.04	14.64	0.00	2.149	11.77	1.03	5.8	94.1	0.1	0.02	0.95	0.92	0.88	2.65	14952	1980	9	0	3	0	0	logfile
✔	8F6Z	28893	2024-02-17	2022-11-17	2.7	3.51	2.66	3.1	0.007	0.80	0.0	0.05	15.71	0.00	1.907	8.80	0.00	3.0	97.0	0.0	0.31	0.82	0.87	4.21	3.2	0.003	0.52	0.0	0.04	14.11	0.00	2.166	7.36	0.97	2.1	97.9	0.0	1.10	1.14	0.77	0.85	3.68	16997	2015	19	0	37	5	0	logfile
✔	8HHZ	34808	2024-02-24	2022-11-17	4.28	4.33	4.27	4.2	0.004	0.74	0.0	0.05	12.44	0.01	1.825	22.52	0.00	6.6	93.4	0.0	-1.30	0.47	0.50	—	4.2	0.007	0.93	0.0	0.05	13.01	0.01	1.975	30.98	0.03	10.2	89.8	0.1	-2.12	1.17	0.50	0.58	—	32020	4243	9	0	0	0	0	logfile
✔	8BPo	16155	2024-02-22	2022-11-17	2.8	2.66	2.77	2.8	0.004	0.85	0.0	0.04	23.11	0.01	1.912	3.73	0.03	3.4	96.6	0.0	-2.01	0.76	0.85	3.72	2.8	0.008	0.77	0.0	0.05	23.55	0.01	1.060	8.05	3.48	4.1	95.8	0.0	-0.37	0.93	0.78	0.90	3.67	143326	7606	64	3814	246	0	0	logfile
✔	8HHX	34806	2024-02-20	2022-11-17	3.62	3.70	3.71	3.6	0.004	0.64	0.0	0.05	13.43	0.01	2.114	12.98	0.17	5.7	94.1	0.1	-1.21	0.47	0.60	0.93	3.6	0.004	0.69	0.0	0.05	15.16	0.00	2.046	15.76	2.39	8.3	91.7	0.0	-1.69	0.46	0.47	0.65	0.99	27435	3477	17	0	35	0	0	logfile
✔	8F6Y	28892	2024-02-17	2022-11-17	2.79	3.79	2.77	3.3	0.007	0.76	0.0	0.05	15.56	0.00	2.076	5.34	0.00	2.7	97.3	0.0	0.98	0.82	0.90	4.19	3.3	0.003	0.50	0.0	0.04	13.88	0.00	2.233	4.85	0.48	1.6	98.4	0.0	2.03	0.42	0.77	0.83	3.97	17053	2022	18	0	36	5	0	logfile
✔	8HHY	34807	2024-02-20	2022-11-17	2.77	2.97	2.80	2.9	0.004	0.69	0.0	0.05	14.26	0.00	2.074	14.92	0.00	5.6	94.3	0.1	-1.92	0.55	0.54	1.90	2.9	0.007	0.81	0.0	0.05	15.86	0.00	1.987	17.88	2.48	6.5	93.5	0.0	-1.87	0.42	0.60	0.63	1.80	27420	3483	16	0	32	0	0	logfile

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