Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HJ5	34833	2024-02-14	2022-11-22	3.0	3.45	3.17	3.4	0.003	0.85	0.0	0.04	14.82	0.00	2.244	8.22	0.19	5.4	94.6	0.0	-0.98	0.54	0.81	3.03	3.4	0.002	0.59	0.0	0.04	15.52	0.00	2.040	6.14	2.36	4.2	95.8	0.0	-0.05	0.27	0.55	0.81	2.39	9678	1232	7	0	1	0	0	logfile
✔	8BR2	16197	2024-02-16	2022-11-22	2.9	2.85	2.83	2.9	0.008	0.56	0.0	0.04	18.03	0.02	2.117	11.68	0.80	3.0	97.0	0.0	-2.85	0.62	0.85	3.35	2.9	0.002	0.50	0.0	0.04	19.08	0.00	2.160	6.15	1.53	1.5	98.5	0.0	-0.37	1.49	0.59	0.86	3.32	15574	1866	21	40	18	120	0	logfile
✔	8HJ4	34832	2024-02-15	2022-11-22	3.1	3.53	3.17	3.4	0.003	0.60	0.0	0.04	18.93	0.00	2.211	12.99	0.73	6.9	92.9	0.3	-1.12	0.78	0.73	2.10	3.4	0.003	0.59	0.0	0.04	19.62	0.00	2.150	12.62	2.08	6.1	93.9	0.0	-0.57	0.46	0.79	0.76	1.71	11652	1163	3	113	0	0	0	logfile
✔	8HiR	34827	2024-02-21	2022-11-21	3.18	3.42	3.31	3.4	0.003	0.77	8.0	0.05	15.77	0.00	2.000	11.70	0.09	2.8	97.2	0.0	-1.87	0.62	0.80	2.97	3.4	0.002	0.60	0.0	0.04	16.69	0.00	2.207	8.91	2.44	2.6	97.4	0.0	-0.15	0.36	0.62	0.81	2.53	29168	3672	8	0	16	0	0	logfile
✔	8HiN	34823	2024-02-13	2022-11-21	3.3	2.71	3.35	3.3	0.017	2.48	6.0	0.10	16.97	0.01	2.228	12.04	4.58	6.7	92.6	0.7	-3.91	0.50	0.70	2.78	3.3	0.003	0.65	0.0	0.04	16.94	0.00	2.224	8.41	3.98	3.3	96.7	0.0	1.47	0.49	0.66	0.79	1.94	4788	617	3	0	2	0	0	logfile
✔	8HiQ	34826	2024-02-13	2022-11-21	3.2	3.35	3.10	3.3	0.005	0.74	0.0	0.04	17.06	0.01	2.284	14.48	0.00	3.9	96.1	0.0	1.52	0.43	0.77	2.29	3.3	0.003	0.59	0.0	0.04	16.85	0.01	2.255	13.87	1.21	4.3	95.7	0.0	1.60	1.05	0.43	0.78	2.15	3274	416	1	0	1	0	0	logfile
✔	8Hio	34824	2024-02-13	2022-11-21	3.73	4.15	3.86	4.0	0.005	0.66	0.0	0.04	18.51	0.00	1.744	10.33	0.00	2.8	97.2	0.0	2.22	0.74	0.74	0.93	4.0	0.004	0.70	0.0	0.04	19.53	0.00	1.941	16.12	3.79	2.3	97.7	0.0	1.84	3.00	0.76	0.75	0.63	6681	719	5	47	2	0	0	logfile
✔	8HiP	34825	2024-02-14	2022-11-21	2.77	2.98	2.77	3.1	0.006	0.80	5.0	0.09	13.36	0.01	1.885	10.70	0.09	2.9	97.1	0.0	-3.00	0.66	0.81	4.31	3.1	0.003	0.56	0.0	0.04	15.84	0.00	2.229	7.25	2.76	3.4	96.6	0.0	1.58	0.42	0.66	0.83	3.55	10396	1294	8	0	14	0	0	logfile
✔	8HiM	34821	2024-02-19	2022-11-21	2.8	2.61	2.87	2.6	0.008	0.99	1.0	0.06	17.53	0.01	2.173	6.40	0.60	5.7	94.2	0.1	-3.49	0.73	0.83	3.18	2.6	0.004	0.63	0.0	0.04	18.76	0.00	2.122	7.74	2.54	5.8	94.2	0.0	-0.67	1.22	0.73	0.85	2.70	23948	2849	18	63	7	0	0	logfile
✔	8F86	28915	2024-02-16	2022-11-21	3.1	3.36	3.26	1.8	0.007	0.69	0.0	0.06	26.36	0.00	1.927	8.46	0.00	5.2	94.6	0.2	0.66	0.85	0.80	1.06	1.8	0.004	0.66	0.0	0.05	27.10	0.01	2.125	10.39	2.75	4.3	95.5	0.2	0.71	0.38	0.86	0.81	1.16	14400	1055	13	296	2	0	0	logfile
✔	8F7T	28910	2024-02-15	2022-11-20	4.1	4.86	4.16	4.3	0.006	0.88	1.0	0.05	21.49	0.01	1.835	16.60	1.36	10.4	89.0	0.6	-2.43	0.77	0.71	—	4.4	0.004	0.78	0.0	0.05	14.25	0.00	2.134	17.63	0.07	8.2	91.5	0.4	-1.54	1.53	0.79	0.81	—	13326	1641	15	0	21	0	0	logfile
✔	8F7Q	28907	2024-02-15	2022-11-20	3.22	3.34	3.24	3.4	0.004	0.87	0.0	0.07	8.26	0.01	2.262	3.31	0.00	1.4	98.6	0.0	0.89	0.64	0.78	2.57	3.3	0.003	0.55	0.0	0.04	12.29	0.00	2.129	5.45	1.62	1.8	98.2	0.0	1.80	0.65	0.64	0.83	2.84	11994	1484	11	0	10	0	0	logfile
✔	8F7S	28909	2024-02-14	2022-11-20	3.0	2.55	2.85	3.0	0.005	0.87	0.0	0.06	8.47	0.01	2.290	3.53	0.00	1.6	98.4	0.0	1.29	0.56	0.77	3.32	2.8	0.003	0.60	0.0	0.04	14.27	0.00	2.097	5.35	2.18	2.1	97.9	0.0	1.92	1.37	0.59	0.84	3.07	9975	1225	10	0	21	0	0	logfile
✔	8HiK	34819	2024-02-14	2022-11-20	3.72	2.46	3.76	3.2	0.005	0.82	0.0	0.05	9.44	0.01	2.282	4.81	0.00	5.3	94.7	0.0	-3.54	0.66	0.63	1.53	2.1	0.003	0.71	0.0	0.04	14.29	0.00	2.129	13.16	1.79	5.5	94.5	0.0	-0.67	0.78	0.69	0.67	1.34	8238	1055	5	0	1	0	0	logfile
✔	8F7R	28908	2024-02-15	2022-11-20	3.28	2.92	3.26	3.4	0.004	0.84	0.0	0.07	8.21	0.01	2.260	4.20	0.00	1.5	98.5	0.0	-0.71	0.54	0.70	1.83	3.3	0.003	0.60	0.0	0.04	13.27	0.00	2.014	12.68	3.09	2.3	97.7	0.0	1.23	1.15	0.58	0.79	2.46	11697	1443	11	0	12	0	0	logfile
✔	8HiL	34820	2024-02-18	2022-11-20	3.57	3.29	3.64	3.2	0.007	1.12	0.0	0.06	11.20	0.01	2.105	6.12	1.12	13.3	86.4	0.3	-4.62	0.82	0.79	2.26	3.2	0.002	0.63	0.0	0.04	14.77	0.00	2.022	9.28	2.44	11.1	88.9	0.0	-1.83	1.25	0.83	0.79	1.37	23134	2914	15	0	7	0	0	logfile
✔	8F7W	28911	2024-02-14	2022-11-20	3.19	3.44	3.14	3.4	0.004	0.80	0.0	0.06	8.29	0.01	2.282	3.96	0.10	1.9	98.1	0.0	-1.80	0.58	0.75	1.92	3.4	0.002	0.55	0.0	0.04	13.61	0.00	2.190	8.24	2.23	2.1	97.9	0.0	0.60	1.23	0.60	0.81	2.30	9087	1145	7	0	5	0	0	logfile
✔	8HiA	34813	2024-02-13	2022-11-19	4.9	4.49	2.13	9.6	0.001	0.36	0.0	0.05	15.83	0.00	2.251	1.11	2.86	12.1	87.6	0.2	-4.39	0.47	0.07	—	9.4	0.009	0.98	0.0	0.05	15.73	0.01	2.082	32.36	4.76	19.0	81.0	0.0	-5.53	12.59	0.68	0.24	—	7200	460	20	0	0	0	3660	logfile
✔	8Hi4	34812	2024-02-17	2022-11-18	3.35	3.51	3.32	3.5	0.006	0.87	0.0	0.06	15.95	0.00	2.231	9.91	0.35	8.1	91.9	0.0	-2.10	0.65	0.63	0.65	3.6	0.002	0.63	0.0	0.04	17.25	0.00	2.126	10.05	3.76	6.7	93.3	0.0	-1.15	0.53	0.68	0.70	1.01	17432	2368	2	0	0	0	0	logfile
✔	8F74	28894	2024-02-16	2022-11-18	3.1	3.55	3.19	3.5	0.005	0.72	0.0	0.04	17.29	0.00	2.206	5.81	0.06	2.6	97.4	0.0	0.91	0.63	0.80	1.72	3.5	0.003	0.51	0.0	0.04	16.35	0.00	2.227	8.59	2.98	2.8	97.2	0.0	1.91	1.13	0.62	0.81	1.44	16008	1881	18	0	15	6	0	logfile

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