Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HK5	34846	2024-02-13	2022-11-24	3.0	2.26	2.92	2.1	0.003	0.50	0.0	0.04	11.85	0.00	2.073	2.69	0.24	0.8	99.2	0.0	-0.35	0.74	0.74	2.80	2.0	0.003	0.61	0.0	0.04	15.45	0.00	2.176	9.57	2.68	1.6	98.4	0.0	0.90	0.54	0.76	0.80	3.03	7604	967	6	0	2	0	0	logfile
✔	8HK2	34842	2024-02-14	2022-11-24	2.9	2.57	2.94	3.1	0.007	1.06	2.0	0.08	9.70	0.01	2.114	6.33	0.79	2.5	97.1	0.3	0.47	0.78	0.81	3.37	3.2	0.003	0.64	0.0	0.04	14.50	0.00	2.147	9.06	2.57	1.7	98.2	0.1	1.23	2.68	0.79	0.86	3.01	9548	1212	7	0	7	0	0	logfile
✔	8HK3	34843	2024-02-14	2022-11-24	3.2	2.28	3.11	2.1	0.002	0.42	0.0	0.04	6.31	0.00	2.069	3.40	0.11	0.9	99.1	0.0	-1.02	0.74	0.73	3.34	2.1	0.003	0.57	0.0	0.04	13.55	0.00	2.146	6.74	2.45	3.0	97.0	0.0	0.97	1.21	0.77	0.79	3.00	8746	1135	5	0	0	0	0	logfile
✔	8HK1	34841	2024-02-21	2022-11-24	2.7	2.81	2.75	2.9	0.004	0.79	3.0	0.05	18.69	0.01	1.262	10.95	5.96	3.6	96.3	0.1	-2.81	0.56	0.61	2.14	2.8	0.006	0.74	0.0	0.05	18.43	0.00	2.055	7.84	3.93	5.0	94.9	0.0	-0.15	1.31	0.66	0.81	2.49	30236	4205	24	148	5	0	0	logfile
✔	8BRJ	16217	2024-02-16	2022-11-23	4.08	4.17	4.08	4.0	0.003	0.64	0.0	0.04	13.33	0.00	2.086	18.92	0.17	6.9	92.7	0.4	-0.95	0.72	0.46	—	4.0	0.003	0.79	0.0	0.05	13.41	0.01	2.095	16.13	0.09	6.0	93.5	0.5	-1.02	1.78	0.85	0.78	—	11627	1582	3	0	0	0	0	logfile
✔	8BRD	16212	2024-02-14	2022-11-23	2.48	2.70	2.49	2.8	0.005	0.83	2.0	0.06	16.18	0.02	1.733	13.70	2.88	2.4	97.6	0.0	2.09	0.57	0.78	2.12	2.8	0.004	0.56	0.0	0.04	17.12	0.00	2.119	10.17	3.26	2.1	97.9	0.0	3.00	0.96	0.61	0.81	2.01	9929	1312	13	0	2	12	0	logfile
✔	8BRi	16215	2024-02-14	2022-11-23	3.9	4.18	3.97	4.1	0.005	1.30	2.0	0.07	16.37	0.01	1.969	24.91	1.15	2.8	97.2	0.0	2.08	0.70	0.79	1.45	4.1	0.004	0.98	0.0	0.05	17.21	0.00	2.059	20.05	4.03	2.2	97.8	0.0	1.27	0.57	0.71	0.80	0.83	9911	1312	7	0	0	0	0	logfile
✔	8HJV	34839	2024-02-18	2022-11-23	3.1	2.67	3.34	3.2	0.019	2.02	2.0	0.52	20.90	0.04	1.901	19.96	0.99	5.7	94.3	0.0	-0.85	0.60	0.79	1.73	3.1	0.004	0.88	0.0	0.04	18.93	0.00	2.047	8.12	4.02	5.7	94.3	0.0	1.84	0.73	0.62	0.84	2.05	22193	2265	68	0	67	0	0	logfile
✔	8HJU	34838	2024-02-19	2022-11-23	2.8	2.56	2.77	2.8	0.020	2.08	1.0	0.40	20.78	0.03	1.827	25.04	0.66	3.6	96.3	0.0	-0.29	0.65	0.84	3.31	2.7	0.004	0.79	0.0	0.04	18.66	0.00	1.901	12.50	2.08	3.5	96.5	0.0	2.09	1.19	0.66	0.86	3.42	23917	2330	71	0	97	0	0	logfile
✔	8F8P	28932	2024-02-16	2022-11-22	2.26	2.19	2.27	1.9	0.004	0.83	0.0	0.05	17.73	0.01	2.301	2.96	2.04	2.7	97.3	0.0	-1.31	0.72	0.85	2.89	1.8	0.006	0.65	0.0	0.05	17.08	0.00	2.015	6.43	2.49	3.7	96.3	0.0	0.05	1.16	0.74	0.88	3.79	14640	1855	10	0	10	0	0	logfile
✔	8HJ9	34835	2024-02-13	2022-11-22	3.12	3.29	3.00	3.2	0.004	0.65	0.0	0.04	16.74	0.00	2.234	10.94	0.00	2.7	97.3	0.0	1.80	0.43	0.76	3.45	3.2	0.002	0.49	0.0	0.04	16.17	0.00	2.217	11.09	1.82	2.9	97.1	0.0	1.75	1.99	0.43	0.78	2.83	3274	416	1	0	1	0	0	logfile
✔	8HJ2	33481	2024-02-13	2022-11-22	3.8	3.53	3.77	3.5	0.007	1.20	0.0	0.07	13.41	0.01	2.242	5.80	0.00	4.9	95.1	0.0	-2.19	0.59	0.75	1.57	3.5	0.003	0.69	0.0	0.04	16.01	0.00	2.204	12.03	5.36	3.7	96.3	0.0	0.71	0.49	0.58	0.74	1.17	7467	1027	5	0	0	0	0	logfile
✔	8HJ3	34831	2024-02-13	2022-11-22	3.29	3.43	3.19	3.3	0.005	0.80	0.0	0.05	14.80	0.01	2.200	16.79	0.30	3.6	96.4	0.0	1.21	0.46	0.76	2.55	3.3	0.004	0.69	0.0	0.05	16.01	0.00	2.192	16.18	3.64	3.4	96.6	0.0	0.82	0.38	0.47	0.79	2.05	3274	416	1	0	1	0	0	logfile
✔	8HJ0	33482	2024-02-14	2022-11-22	3.12	2.73	3.10	2.8	0.006	1.07	0.0	0.06	14.89	0.01	2.254	6.47	0.00	4.6	95.4	0.0	-1.89	0.52	0.66	2.34	2.8	0.003	0.60	0.0	0.04	16.61	0.00	2.181	11.72	3.88	4.2	95.8	0.0	0.43	0.43	0.52	0.68	1.88	8260	1043	5	0	0	0	0	logfile
✔	8HiX	33480	2024-02-14	2022-11-22	3.12	2.87	3.08	3.0	0.006	0.94	0.0	0.06	15.23	0.01	2.178	6.64	0.00	4.1	95.9	0.0	-1.52	0.55	0.70	2.46	3.0	0.003	0.55	0.0	0.04	16.95	0.00	2.131	10.97	2.32	3.4	96.6	0.0	0.78	0.39	0.54	0.72	1.87	8274	1043	5	0	0	0	0	logfile
✔	8HiZ	34830	2024-02-13	2022-11-22	3.08	3.26	2.97	3.2	0.004	0.70	0.0	0.04	16.64	0.00	2.324	14.33	0.30	2.9	97.1	0.0	1.51	0.40	0.77	2.44	3.2	0.003	0.63	0.0	0.04	16.53	0.00	2.132	13.40	1.52	4.1	95.9	0.0	0.88	1.06	0.40	0.80	2.29	3274	416	1	0	1	0	0	logfile
✔	8HJ4	34832	2024-02-15	2022-11-22	3.1	3.53	3.17	3.4	0.003	0.60	0.0	0.04	18.93	0.00	2.211	12.99	0.73	6.9	92.9	0.3	-1.12	0.78	0.73	2.10	3.4	0.003	0.59	0.0	0.04	19.62	0.00	2.150	12.62	2.08	6.1	93.9	0.0	-0.57	0.46	0.79	0.76	1.71	11652	1163	3	113	0	0	0	logfile
✔	8HJ5	34833	2024-02-14	2022-11-22	3.0	3.45	3.17	3.4	0.003	0.85	0.0	0.04	14.82	0.00	2.244	8.22	0.19	5.4	94.6	0.0	-0.98	0.54	0.81	3.03	3.4	0.002	0.59	0.0	0.04	15.52	0.00	2.040	6.14	2.36	4.2	95.8	0.0	-0.05	0.27	0.55	0.81	2.39	9678	1232	7	0	1	0	0	logfile
✔	8F8S	28935	2024-02-18	2022-11-22	2.84	2.18	2.89	1.9	0.004	0.61	0.0	0.05	14.04	0.00	2.002	4.56	2.94	3.2	96.8	0.0	-0.35	0.80	0.84	3.68	1.9	0.005	0.69	0.0	0.05	16.97	0.00	1.901	7.88	3.76	3.8	96.2	0.0	0.14	0.33	0.80	0.84	3.37	20371	2579	14	0	14	0	0	logfile
✔	8F8T	28936	2024-02-18	2022-11-22	3.26	3.87	3.40	3.6	0.005	0.93	0.0	0.06	15.12	0.01	2.105	2.47	3.58	3.7	96.3	0.0	-0.20	0.83	0.85	2.65	3.6	0.002	0.60	0.0	0.04	14.63	0.00	1.969	6.03	0.87	2.8	97.2	0.0	1.07	2.48	0.84	0.88	1.84	22393	2833	15	0	14	0	0	logfile

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