Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FCT	28992	2024-02-22	2022-12-01	3.42	4.38	3.67	3.9	0.011	0.81	0.0	0.06	12.05	0.00	2.429	0.62	0.05	1.3	98.5	0.1	0.46	0.71	0.53	0.99	3.9	0.003	0.73	0.0	0.04	14.21	0.00	2.168	10.82	1.11	1.7	98.3	0.0	1.97	4.29	0.88	0.85	0.72	34329	4356	13	0	12	0	0	logfile
✔	8FCV	28994	2024-02-18	2022-12-01	2.95	4.02	3.25	3.6	0.003	0.62	0.0	0.04	19.30	0.00	1.983	14.48	0.73	4.1	95.4	0.4	0.45	0.85	0.77	1.77	3.6	0.005	0.65	0.0	0.04	19.26	0.00	1.805	13.91	2.52	4.0	95.7	0.3	0.70	1.61	0.87	0.84	1.71	23116	2695	17	60	14	0	0	logfile
✔	8FCW	28997	2024-02-16	2022-12-01	2.87	4.14	3.11	3.6	0.010	0.90	0.0	0.06	20.73	0.01	1.989	13.44	2.09	3.6	96.0	0.4	-0.40	0.85	0.80	1.84	3.6	0.003	0.65	0.0	0.04	19.92	0.00	1.870	11.82	2.36	3.7	96.0	0.4	0.90	1.32	0.87	0.85	1.71	15170	1715	12	60	10	0	0	logfile
✔	8BUU	16246	2024-02-23	2022-11-30	2.9	3.66	2.92	3.1	0.004	0.56	0.0	0.03	22.72	0.01	1.758	4.20	0.95	3.1	96.9	0.1	-1.03	0.83	0.77	3.67	3.1	0.007	0.69	0.0	0.04	22.72	0.01	1.781	12.61	2.93	2.9	97.1	0.0	0.61	0.43	0.92	0.94	2.81	144765	5859	60	4584	107	0	0	logfile
✔	8FAZ	28961	2024-02-13	2022-11-29	2.3	2.71	2.34	3.1	0.004	0.62	0.0	0.04	11.25	0.00	1.986	10.57	0.50	2.7	97.3	0.0	0.35	0.83	0.81	3.43	3.1	0.003	0.64	0.0	0.04	14.95	0.00	1.957	15.05	2.11	2.4	97.6	0.0	0.74	2.04	0.83	0.81	2.53	7331	926	7	0	5	0	0	logfile
✔	8HLB	34871	2024-02-13	2022-11-29	3.63	3.93	3.68	4.0	0.003	0.65	1.0	0.04	13.64	0.01	2.204	10.49	0.00	8.4	91.2	0.4	-2.13	0.70	0.75	2.35	3.9	0.003	0.64	0.0	0.04	15.53	0.00	2.121	11.10	2.94	7.8	91.8	0.4	-2.02	2.45	0.70	0.75	2.09	7461	977	5	0	0	0	0	logfile
✔	8FAK	28959	2024-02-16	2022-11-28	3.22	3.32	3.44	3.4	0.002	0.46	0.0	0.04	19.10	0.00	1.988	8.55	0.00	2.3	97.7	0.0	1.43	0.69	0.74	2.43	3.4	0.004	0.57	0.0	0.04	20.02	0.01	2.050	6.62	1.56	5.2	94.8	0.0	-0.17	0.63	0.71	0.79	2.65	14963	837	7	57	2	0	7248	logfile
✔	8HKP	34856	2024-02-22	2022-11-27	3.6	3.48	3.49	3.5	0.009	0.68	0.0	0.04	23.50	0.00	2.142	4.27	0.00	2.7	97.3	0.0	-2.19	0.64	0.87	3.27	3.5	0.004	0.57	0.0	0.04	17.28	0.00	2.147	4.07	0.48	2.1	97.9	0.0	2.40	0.52	0.63	0.88	2.59	34098	2088	18	0	6	0	16842	logfile
✔	8HKi	34852	2024-02-22	2022-11-27	3.1	3.25	3.50	3.6	0.003	0.53	0.0	0.04	11.38	0.00	1.675	4.97	0.05	2.4	97.6	0.0	-3.59	0.61	0.70	1.29	3.5	0.003	0.72	0.0	0.04	16.70	0.00	2.110	12.17	2.20	2.5	97.5	0.0	1.43	1.12	0.64	0.79	0.79	33926	4487	22	0	6	0	0	logfile
✔	8HKM	34855	2024-02-20	2022-11-27	2.95	2.42	3.07	1.9	0.003	0.71	3.0	0.05	16.01	0.01	1.484	10.49	1.30	2.6	97.3	0.1	-0.56	0.80	0.84	3.13	1.8	0.004	0.63	0.0	0.04	16.41	0.00	2.179	9.19	2.18	2.8	97.1	0.1	0.67	1.15	0.80	0.83	2.86	28855	3596	8	0	19	0	0	logfile
✔	8HKK	34853	2024-02-20	2022-11-27	2.84	2.16	2.96	1.8	0.012	1.19	8.0	0.05	16.14	0.01	1.710	12.44	0.92	2.1	97.8	0.1	-0.41	0.79	0.82	3.56	1.8	0.003	0.64	0.0	0.04	16.91	0.00	2.116	8.42	3.05	2.5	97.3	0.1	1.33	0.54	0.79	0.82	3.84	28687	3596	8	0	23	0	0	logfile
✔	8HKQ	34858	2024-02-20	2022-11-27	2.9	2.37	3.12	2.1	0.008	0.76	1.0	0.04	16.07	0.00	1.532	8.96	0.19	2.6	97.4	0.0	0.14	0.73	0.66	0.58	1.9	0.003	0.66	0.0	0.04	16.78	0.00	2.084	9.17	2.01	2.4	97.6	0.0	0.65	0.96	0.80	0.82	2.73	28676	3608	8	0	20	0	0	logfile
✔	8FAD	28953	2024-02-20	2022-11-26	4.0	4.36	4.05	4.2	0.011	1.58	12.0	0.13	17.04	0.03	1.632	10.98	3.64	9.6	89.5	0.9	-2.33	0.71	0.70	—	4.2	0.004	0.82	0.0	0.05	14.01	0.00	2.173	12.30	2.95	9.2	90.7	0.1	-1.46	1.65	0.76	0.82	—	16210	1797	60	0	145	0	0	logfile
✔	8HKE	34850	2024-02-15	2022-11-25	3.71	4.00	3.77	3.9	0.007	0.82	4.0	0.06	17.03	0.00	2.049	16.52	0.09	9.1	90.9	0.0	-5.00	0.65	0.80	2.65	3.9	0.004	0.64	0.0	0.04	17.85	0.00	2.080	13.56	3.75	5.5	94.5	0.0	-1.24	1.19	0.65	0.80	1.95	11854	1306	6	74	2	0	0	logfile
✔	8HK6	34847	2024-02-20	2022-11-25	2.64	2.08	2.77	1.7	0.006	0.80	0.0	0.05	16.47	0.01	1.477	13.25	1.62	2.8	97.0	0.2	-0.80	0.79	0.82	3.37	1.7	0.003	0.60	0.0	0.04	17.29	0.00	2.162	9.11	3.24	2.6	97.1	0.2	0.87	0.42	0.79	0.82	3.07	28704	3596	8	0	24	0	0	logfile
✔	8HKF	34851	2024-02-20	2022-11-25	2.66	2.09	2.77	1.7	0.008	0.97	7.0	0.05	16.15	0.01	1.494	14.33	0.60	2.6	97.3	0.1	-0.44	0.79	0.82	3.80	1.7	0.007	0.74	0.0	0.05	16.91	0.01	2.111	8.87	2.67	3.1	96.8	0.1	0.78	1.55	0.80	0.84	3.83	28700	3596	8	0	20	0	0	logfile
✔	8HKC	34849	2024-02-19	2022-11-25	2.49	2.34	2.50	2.3	0.002	0.45	0.0	0.04	17.03	0.00	2.123	4.80	0.00	1.5	98.5	0.0	0.81	0.77	0.86	3.35	2.3	0.002	0.53	0.0	0.04	18.68	0.00	2.015	5.76	0.88	2.0	98.0	0.0	0.99	0.35	0.76	0.88	3.30	25779	3067	8	83	3	0	0	logfile
✔	8FA2	28948	2024-02-13	2022-11-25	2.82	2.48	3.15	2.1	0.006	0.55	0.0	0.04	13.54	0.00	2.297	6.56	0.00	1.8	98.2	0.0	-0.12	0.76	0.79	0.72	2.0	0.003	0.41	0.0	0.03	14.28	0.00	2.276	8.68	0.67	0.0	100.0	0.0	5.58	0.34	0.76	0.79	0.70	2577	342	6	0	0	0	0	logfile
✔	8FA1	28947	2024-02-13	2022-11-25	2.51	2.37	2.87	2.7	0.006	0.57	0.0	0.04	15.92	0.00	2.286	8.14	0.00	4.6	95.4	0.0	0.73	0.77	0.80	1.71	2.7	0.003	0.49	0.0	0.04	16.19	0.00	2.354	8.53	1.35	0.9	99.1	0.0	5.07	0.85	0.77	0.79	1.59	2553	339	6	0	0	0	0	logfile
✔	8HJW	34840	2024-02-17	2022-11-24	4.1	4.34	4.18	4.2	0.003	0.70	0.0	0.04	13.47	0.00	2.134	13.05	0.47	2.2	97.5	0.3	0.71	0.80	0.70	—	4.2	0.003	0.65	0.0	0.04	13.40	0.00	2.090	14.04	0.00	2.7	97.2	0.1	0.86	1.24	0.83	0.77	—	18516	2430	2	0	0	0	0	logfile

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