Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BVJ	16265	2024-02-23	2022-12-04	4.5	5.51	4.74	4.6	0.002	0.47	0.0	0.04	15.01	0.00	1.985	4.40	0.00	5.7	94.3	0.0	-2.56	0.83	0.67	—	4.7	0.003	0.62	0.0	0.04	15.48	0.00	1.869	16.92	0.05	6.2	93.8	0.0	-0.93	1.65	0.86	0.74	—	38183	2238	23	55	0	0	18901	logfile
✔	8HMC	34895	2024-02-18	2022-12-03	3.6	3.94	3.81	3.9	0.003	0.58	0.0	0.04	16.34	0.00	2.057	8.37	0.13	6.0	94.0	0.0	-0.07	0.72	0.75	1.46	3.9	0.004	0.61	0.0	0.04	17.54	0.00	2.038	9.29	3.38	7.3	92.5	0.1	-0.38	0.46	0.73	0.79	1.58	21797	2693	5	0	2	0	0	logfile
✔	8HME	34897	2024-02-18	2022-12-03	4.2	4.82	4.19	4.2	0.002	0.58	0.0	0.04	14.51	0.00	2.143	11.78	0.00	4.6	95.2	0.2	-0.01	0.87	0.81	—	4.2	0.002	0.58	0.0	0.04	14.71	0.00	2.178	12.01	0.04	5.1	94.7	0.2	0.34	0.54	0.88	0.82	—	22169	2745	4	0	2	0	0	logfile
✔	8FDG	29011	2024-02-15	2022-12-03	3.2	3.62	—	3.5	0.003	0.68	0.0	0.05	14.00	0.01	2.166	10.24	0.00	11.9	88.1	0.0	-2.81	0.72	0.77	2.13	3.5	0.004	0.75	0.0	0.05	16.02	0.01	2.153	11.08	2.67	13.2	86.8	0.1	-3.15	0.41	0.73	0.79	2.12	12163	1505	1	0	0	0	0	logfile
✔	8HLZ	34886	2024-02-19	2022-12-02	3.5	3.89	3.48	3.4	0.010	1.15	1.0	0.06	21.96	0.01	1.958	26.05	25.98	11.7	86.6	1.8	-4.60	0.61	0.42	0.73	3.5	0.003	0.77	0.0	0.05	17.68	0.00	2.070	16.26	4.43	7.1	92.5	0.4	-1.67	1.97	0.75	0.63	0.87	24718	3034	6	0	0	0	0	logfile
✔	8HM0	34887	2024-02-15	2022-12-02	3.1	3.43	3.01	3.4	0.005	0.72	0.0	0.04	17.21	0.00	2.162	12.48	9.92	9.8	90.1	0.1	-4.58	0.76	0.80	2.15	3.4	0.003	0.64	0.0	0.04	17.05	0.00	2.197	10.75	6.07	7.3	92.7	0.0	-1.43	0.45	0.76	0.81	2.12	11331	1474	3	0	0	0	0	logfile
✔	8FD7	29004	2024-02-17	2022-12-02	3.1	3.01	—	3.2	0.005	0.55	0.0	0.11	12.60	0.00	2.223	7.54	2.76	6.1	93.7	0.1	-0.41	0.72	0.76	2.56	3.2	0.003	0.61	0.0	0.05	13.79	0.00	2.195	8.17	2.85	6.7	93.1	0.1	-0.28	0.45	0.76	0.84	2.27	19701	2416	6	0	20	3	0	logfile
✔	8FCo	28988	2024-02-23	2022-12-01	3.31	3.69	3.60	3.7	0.011	0.89	0.0	0.06	12.14	0.00	2.358	1.13	0.00	1.7	98.3	0.1	0.37	0.67	0.66	1.83	3.7	0.003	0.71	0.0	0.04	15.79	0.00	2.178	10.88	2.68	2.2	97.8	0.0	1.15	2.12	0.71	0.83	1.48	39569	4999	14	0	12	0	0	logfile
✔	8FD3	29001	2024-02-20	2022-12-01	3.12	3.37	3.24	3.2	0.003	0.57	0.0	0.04	18.48	0.00	2.137	10.11	2.76	5.4	94.3	0.3	0.44	0.77	0.68	1.53	3.2	0.005	0.66	0.0	0.04	18.87	0.00	2.094	12.74	2.57	6.1	93.6	0.3	0.19	1.70	0.84	0.82	2.45	26250	2979	15	85	0	0	0	logfile
✔	8FCW	28997	2024-02-16	2022-12-01	2.87	4.14	3.11	3.6	0.010	0.90	0.0	0.06	20.73	0.01	1.989	13.44	2.09	3.6	96.0	0.4	-0.40	0.85	0.80	1.84	3.6	0.003	0.65	0.0	0.04	19.92	0.00	1.870	11.82	2.36	3.7	96.0	0.4	0.90	1.32	0.87	0.85	1.71	15170	1715	12	60	10	0	0	logfile
✔	8FCV	28994	2024-02-18	2022-12-01	2.95	4.02	3.25	3.6	0.003	0.62	0.0	0.04	19.30	0.00	1.983	14.48	0.73	4.1	95.4	0.4	0.45	0.85	0.77	1.77	3.6	0.005	0.65	0.0	0.04	19.26	0.00	1.805	13.91	2.52	4.0	95.7	0.3	0.70	1.61	0.87	0.84	1.71	23116	2695	17	60	14	0	0	logfile
✔	8BUZ	16252	2024-02-14	2022-12-01	3.5	3.43	3.54	3.4	0.003	0.62	0.0	0.04	17.23	0.00	1.915	11.78	0.46	4.8	95.2	0.0	0.41	0.74	0.76	1.17	3.5	0.003	0.61	0.0	0.04	17.54	0.00	1.874	11.37	4.25	5.2	94.8	0.0	0.96	1.40	0.74	0.78	1.24	9921	1223	4	0	3	0	0	logfile
✔	8FCY	28999	2024-02-18	2022-12-01	3.4	3.72	3.53	3.7	0.003	0.59	0.0	0.04	14.75	0.00	2.224	7.84	0.12	4.5	95.5	0.0	0.50	0.75	0.81	1.99	3.7	0.002	0.54	0.0	0.04	16.13	0.00	2.190	8.12	1.33	4.5	95.5	0.0	0.78	0.46	0.79	0.86	1.75	23142	2864	1	0	4	0	0	logfile
✔	8FD2	29000	2024-02-20	2022-12-01	3.65	4.42	3.76	3.9	0.003	0.57	0.0	0.04	17.94	0.00	2.136	9.87	2.84	5.4	94.3	0.3	0.44	0.76	0.58	0.67	3.9	0.005	0.83	0.0	0.04	19.08	0.01	2.081	29.54	3.74	6.6	93.2	0.2	-0.63	1.21	0.83	0.74	0.94	25797	2979	13	63	0	0	0	logfile
✔	8FCQ	28990	2024-02-23	2022-12-01	3.93	4.35	4.09	4.2	0.011	0.85	0.0	0.06	12.29	0.00	2.387	1.15	0.03	1.7	98.2	0.1	0.31	0.69	0.55	0.57	4.2	0.003	0.81	0.0	0.05	15.80	0.00	2.067	16.04	2.64	2.4	97.6	0.0	0.77	1.17	0.81	0.79	0.22	36904	4667	13	0	12	0	0	logfile
✔	8FCX	28998	2024-02-16	2022-12-01	3.04	4.27	3.25	3.6	0.003	0.60	0.0	0.04	17.79	0.00	1.984	13.10	0.61	3.9	95.4	0.7	0.34	0.85	0.79	0.79	3.6	0.002	0.58	0.0	0.04	17.51	0.00	1.975	11.92	1.28	3.9	95.7	0.4	1.29	2.52	0.87	0.83	0.78	13940	1715	10	0	10	0	0	logfile
✔	8FCJ	28980	2024-02-20	2022-12-01	2.83	3.46	2.93	3.2	0.003	0.56	0.0	0.04	19.33	0.00	2.120	9.78	2.91	5.5	94.2	0.3	0.58	0.82	0.86	3.35	3.2	0.004	0.58	0.0	0.04	19.38	0.00	2.161	9.50	3.10	5.4	94.3	0.2	0.55	1.09	0.83	0.87	3.24	26820	2979	15	113	0	0	0	logfile
✔	8FCM	28983	2024-02-23	2022-12-01	3.27	3.63	—	3.7	0.011	0.85	0.0	0.06	12.28	0.00	2.381	1.16	0.00	1.8	98.1	0.2	0.39	0.69	0.67	1.85	3.7	0.006	0.76	0.0	0.05	15.96	0.00	2.051	11.71	2.57	2.4	97.6	0.0	0.85	1.01	0.71	0.82	1.52	36829	4658	13	0	12	0	0	logfile
✔	8FCU	28993	2024-02-22	2022-12-01	3.19	3.96	3.47	3.7	0.003	0.65	0.0	0.04	19.41	0.00	2.003	15.98	0.72	6.6	92.9	0.5	-0.06	0.83	0.79	2.15	3.7	0.006	0.68	0.0	0.04	19.55	0.01	1.960	15.65	2.79	7.4	92.2	0.5	-0.05	1.16	0.83	0.81	2.01	32692	3594	18	156	2	0	0	logfile
✔	8FCR	28991	2024-02-23	2022-12-01	4.12	4.48	4.26	4.3	0.011	0.85	0.0	0.06	12.23	0.00	2.340	1.40	0.00	1.7	98.2	0.1	0.38	0.70	0.55	—	4.3	0.003	0.76	0.0	0.05	13.36	0.00	2.068	17.25	0.00	2.8	97.2	0.0	0.61	1.41	0.81	0.82	—	36931	4679	13	0	12	0	0	logfile

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