Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BD6	15976	2024-02-21	2022-10-18	4.1	5.46	4.05	4.2	0.009	1.37	18.0	0.09	23.55	0.01	1.062	17.28	8.81	2.2	97.8	0.0	-2.08	0.71	0.61	—	3.4	0.003	0.70	0.0	0.04	20.62	0.00	1.891	22.31	0.00	4.9	95.1	0.0	-0.79	2.01	0.72	0.64	—	29951	2900	24	313	18	0	0	logfile
✔	8EU2	28602	2024-02-14	2022-10-18	2.93	2.77	3.14	2.1	0.005	0.82	0.0	0.05	28.13	0.01	2.381	2.44	0.00	2.5	97.5	0.0	-0.81	0.82	0.81	2.88	2.1	0.004	0.64	0.0	0.03	28.43	0.00	2.291	9.96	2.97	1.2	98.8	0.0	2.78	0.41	0.84	0.84	2.09	8682	524	8	220	0	0	0	logfile
✔	8BCU	15968	2024-02-17	2022-10-17	4.05	3.79	3.99	3.9	0.004	0.55	0.0	0.04	16.80	0.00	1.950	12.32	0.15	6.6	93.3	0.1	-0.88	0.75	0.66	—	3.9	0.003	0.63	0.0	0.04	14.11	0.00	2.114	14.75	0.00	4.0	95.9	0.1	-1.10	2.12	0.83	0.82	—	18279	2349	9	0	0	0	0	logfile
✔	8BCP	15967	2024-02-17	2022-10-17	3.88	3.53	3.81	3.7	0.003	0.53	0.0	0.04	17.06	0.00	2.151	10.41	0.30	3.2	96.7	0.1	-0.67	0.61	0.59	0.14	3.6	0.003	0.59	0.0	0.04	17.75	0.00	2.047	12.54	4.84	3.9	96.0	0.1	-0.98	2.14	0.76	0.81	2.19	18171	2337	9	0	0	0	0	logfile
✔	8ETV	28600	2024-02-14	2022-10-17	3.16	3.01	3.36	2.0	0.006	0.87	0.0	0.05	28.21	0.01	2.305	2.83	0.00	2.3	97.7	0.0	-0.99	0.80	0.77	1.76	2.0	0.004	0.63	0.0	0.03	28.75	0.00	2.106	12.78	4.35	2.0	98.0	0.0	2.14	0.45	0.81	0.80	1.23	8682	524	8	220	0	0	0	logfile
✔	8ETU	28599	2024-02-20	2022-10-17	2.8	2.33	2.89	2.1	0.005	0.92	2.0	0.05	17.82	0.01	1.580	5.60	0.06	3.5	96.5	0.0	-1.69	0.73	0.79	2.09	2.0	0.003	0.63	0.0	0.04	18.29	0.00	2.161	7.35	2.53	2.5	97.5	0.0	0.28	0.54	0.83	0.85	2.16	28670	3656	16	0	6	0	0	logfile
✔	8ETS	28597	2024-02-20	2022-10-17	3.04	2.39	3.30	2.1	0.004	0.83	0.0	0.05	17.56	0.01	1.956	3.86	0.03	3.1	96.9	0.0	-1.71	0.72	0.78	1.98	2.0	0.005	0.65	0.0	0.04	17.83	0.00	2.051	7.94	3.42	3.6	96.4	0.0	0.20	0.54	0.82	0.84	2.43	28670	3656	16	0	6	0	0	logfile
✔	8ETW	28601	2024-02-20	2022-10-17	2.64	2.14	2.84	1.8	0.005	0.91	2.0	0.05	18.08	0.01	1.435	5.62	0.09	3.7	96.3	0.0	-1.81	0.81	0.83	2.59	2.0	0.005	0.65	0.0	0.05	18.22	0.00	2.141	6.87	2.72	3.5	96.5	0.0	0.18	0.90	0.81	0.84	2.61	28666	3656	16	0	6	0	0	logfile
✔	8ETH	24409	2024-02-19	2022-10-17	3.8	2.97	—	2.9	0.006	0.62	0.0	0.04	21.94	0.01	2.088	10.10	0.53	5.2	94.6	0.2	-0.47	0.63	0.61	2.70	2.9	0.007	0.73	0.0	0.04	21.73	0.01	1.998	11.29	2.73	5.1	94.7	0.2	0.07	1.11	0.64	0.61	2.46	77577	6161	42	1508	1	0	0	logfile
✔	8ETi	24395	2024-02-20	2022-10-17	3.7	3.18	—	3.0	0.004	0.62	0.0	0.04	22.47	0.01	2.074	11.57	0.78	5.4	94.6	0.1	-3.47	0.51	0.44	0.44	3.1	0.006	0.76	0.0	0.04	22.36	0.01	2.000	13.53	3.88	5.6	94.3	0.0	-0.48	1.73	0.63	0.65	1.86	90456	7639	46	1812	1	0	0	logfile
✔	8ETG	24397	2024-02-22	2022-10-17	3.4	3.34	—	3.2	0.004	0.54	0.0	0.04	22.66	0.00	2.066	12.59	0.58	4.8	95.1	0.1	-0.31	0.60	0.53	0.47	3.2	0.005	0.73	0.0	0.04	22.56	0.01	1.901	16.56	4.95	4.7	95.2	0.1	-0.15	1.01	0.69	0.68	1.28	99257	7394	49	2226	1	0	0	logfile
✔	8ETJ	24396	2024-02-19	2022-10-17	3.2	3.29	—	3.1	0.004	0.61	0.0	0.04	23.14	0.00	2.061	12.38	0.81	4.9	94.9	0.2	-0.83	0.80	0.81	2.29	3.1	0.006	0.72	0.0	0.04	22.83	0.01	2.076	15.16	3.49	6.3	93.7	0.1	-0.40	1.17	0.82	0.85	2.17	79857	4979	36	1961	1	0	0	logfile
✔	8BCZ	15971	2024-02-14	2022-10-17	2.9	3.19	2.92	3.2	0.003	0.49	0.0	0.04	9.57	0.00	2.204	6.10	1.18	2.8	97.2	0.0	0.33	0.65	0.83	4.65	3.2	0.003	0.53	0.0	0.04	13.30	0.00	2.181	6.64	2.79	2.8	97.2	0.0	0.67	0.42	0.63	0.83	4.23	8505	1100	9	0	0	0	0	logfile
✔	8BCM	15966	2024-02-22	2022-10-17	2.15	2.26	2.26	2.3	0.005	0.67	0.0	0.05	16.84	0.01	2.070	8.09	0.85	2.8	97.0	0.2	0.91	0.72	0.88	5.18	2.3	0.003	0.60	0.0	0.04	16.72	0.00	2.176	8.98	1.39	2.5	97.5	0.0	1.15	0.22	0.73	0.89	4.73	33520	4216	16	0	0	0	0	logfile
✔	8H6F	34501	2024-02-21	2022-10-17	3.3	3.44	3.15	3.5	0.003	0.62	0.0	0.05	16.75	0.02	2.148	5.87	0.26	4.5	95.5	0.1	-1.50	0.69	0.80	1.82	3.5	0.002	0.53	0.0	0.04	16.98	0.00	2.184	5.28	2.03	4.4	95.6	0.0	-0.95	0.92	0.66	0.76	1.79	31017	3890	14	0	34	0	0	logfile
✔	8H6H	34504	2024-02-21	2022-10-17	2.3	3.01	2.32	2.7	0.003	0.47	0.0	0.04	16.99	0.00	2.112	1.88	0.94	3.1	96.9	0.0	1.06	0.84	0.91	5.32	2.7	0.003	0.47	0.0	0.04	16.87	0.00	2.093	1.85	0.88	2.9	97.1	0.0	0.98	0.16	0.87	0.93	5.20	31017	1971	4	0	4	0	15181	logfile
✔	8H69	34497	2024-02-17	2022-10-16	3.7	3.79	3.34	3.7	0.009	1.12	0.0	0.06	12.85	0.01	1.917	7.93	1.52	7.5	92.4	0.2	-4.98	0.77	0.74	2.05	3.7	0.003	0.78	0.0	0.04	16.00	0.00	2.076	16.27	3.09	5.7	94.3	0.0	-1.96	0.97	0.78	0.76	1.43	18028	2153	5	37	0	0	0	logfile
✔	8ET7	28587	2024-02-13	2022-10-16	3.77	4.05	3.85	4.0	0.003	0.49	0.0	0.03	11.06	0.00	2.342	3.90	0.24	3.2	96.8	0.0	1.90	0.49	0.70	1.68	4.0	0.003	0.55	0.0	0.03	15.34	0.00	1.918	7.31	3.54	5.8	94.2	0.0	1.58	1.49	0.50	0.72	1.42	8111	532	3	0	3	0	4007	logfile
✔	8ET3	28585	2024-02-13	2022-10-16	3.7	4.31	3.57	3.7	0.003	0.61	0.0	0.04	12.77	0.00	2.082	2.30	0.00	0.3	99.7	0.0	-0.04	0.86	0.78	2.35	3.7	0.002	0.50	0.0	0.04	14.09	0.00	1.953	6.03	0.69	2.9	97.1	0.0	1.36	0.67	0.86	0.80	2.23	56854	3639	22	0	6	0	28542	logfile
✔	8ET9	28589	2024-02-13	2022-10-16	3.61	3.97	3.84	3.9	0.005	0.61	0.0	0.04	10.84	0.01	2.058	8.46	0.52	1.8	98.2	0.0	1.38	0.46	0.67	2.05	4.0	0.003	0.55	0.0	0.03	14.58	0.00	1.929	9.24	2.62	3.3	96.7	0.0	0.98	4.54	0.47	0.69	2.05	7685	517	1	0	1	0	3796	logfile

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