Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ET7	28587	2024-02-13	2022-10-16	3.77	4.05	3.85	4.0	0.003	0.49	0.0	0.03	11.06	0.00	2.342	3.90	0.24	3.2	96.8	0.0	1.90	0.49	0.70	1.68	4.0	0.003	0.55	0.0	0.03	15.34	0.00	1.918	7.31	3.54	5.8	94.2	0.0	1.58	1.49	0.50	0.72	1.42	8111	532	3	0	3	0	4007	logfile
✔	8H69	34497	2024-02-17	2022-10-16	3.7	3.79	3.34	3.7	0.009	1.12	0.0	0.06	12.85	0.01	1.917	7.93	1.52	7.5	92.4	0.2	-4.98	0.77	0.74	2.05	3.7	0.003	0.78	0.0	0.04	16.00	0.00	2.076	16.27	3.09	5.7	94.3	0.0	-1.96	0.97	0.78	0.76	1.43	18028	2153	5	37	0	0	0	logfile
✔	8ET2	28584	2024-02-24	2022-10-15	4.96	5.56	5.14	5.6	0.004	1.00	0.0	0.05	13.70	0.01	1.879	23.18	0.00	11.7	88.3	0.0	-4.06	0.69	0.49	—	5.5	0.003	0.80	0.0	0.05	13.75	0.00	1.987	16.56	0.00	9.5	90.5	0.0	-3.48	0.68	0.69	0.48	—	43584	5304	24	0	0	0	0	logfile
✔	8ET1	28583	2024-02-23	2022-10-15	4.48	5.31	5.46	4.9	0.003	0.82	0.0	0.05	15.01	0.00	2.180	29.82	0.00	11.5	88.5	0.0	-3.55	0.75	0.57	—	4.9	0.004	0.79	0.0	0.05	15.13	0.01	2.119	32.91	0.02	13.3	86.7	0.0	-3.52	0.67	0.76	0.61	—	35976	4368	24	0	0	0	0	logfile
✔	8ESK	28576	2024-02-22	2022-10-14	2.9	3.14	2.82	3.0	0.012	0.83	0.0	0.15	17.17	0.00	2.117	1.94	0.00	4.0	96.0	0.0	1.40	0.77	0.86	4.43	3.0	0.004	0.63	0.0	0.07	15.14	0.00	2.146	3.30	0.32	3.0	97.0	0.0	1.86	0.49	0.75	0.85	3.96	33779	2030	15	0	40	0	16518	logfile
✔	8BC2	15960	2024-02-16	2022-10-14	2.6	2.43	2.67	2.8	0.012	1.66	0.0	0.10	18.31	0.03	2.311	3.08	13.21	4.2	95.8	0.0	-4.52	0.75	0.85	4.09	2.7	0.003	0.55	0.0	0.04	17.09	0.00	2.079	5.04	1.07	1.8	98.2	0.0	1.88	1.05	0.76	0.87	4.40	16770	2180	20	0	0	460	0	logfile
✔	8BC3	15961	2024-02-17	2022-10-14	2.1	2.00	2.14	2.2	0.014	2.07	0.0	0.11	19.40	0.02	2.310	1.34	11.95	3.3	96.7	0.0	-4.28	0.71	0.84	5.67	2.1	0.003	0.56	0.0	0.04	16.32	0.00	2.158	3.95	1.38	0.6	99.4	0.0	1.69	0.50	0.76	0.88	6.23	16880	2170	30	0	10	500	0	logfile
✔	8ESQ	24411	2024-02-18	2022-10-14	2.8	2.84	—	2.7	0.003	0.56	0.0	0.04	21.41	0.00	2.136	10.87	1.01	3.9	96.0	0.1	0.54	0.73	0.72	2.54	2.7	0.005	0.65	0.0	0.04	21.17	0.00	2.062	11.97	1.96	4.2	95.7	0.1	0.76	1.11	0.73	0.72	2.44	130409	10263	59	2461	1	0	0	logfile
✔	8ESV	28580	2024-02-13	2022-10-14	3.3	2.37	3.29	2.0	0.006	0.71	0.0	0.04	19.21	0.01	1.929	12.92	0.00	6.7	93.1	0.2	-0.67	0.76	0.76	2.53	2.8	0.006	0.74	0.0	0.05	17.54	0.00	1.942	14.69	3.88	8.6	91.2	0.2	-0.71	0.30	0.77	0.77	2.41	7222	933	8	0	13	0	0	logfile
✔	8ESR	24422	2024-02-15	2022-10-14	3.2	3.24	—	3.0	0.002	0.47	0.0	0.03	21.68	0.00	2.118	7.71	0.28	3.0	96.9	0.1	0.71	0.76	0.74	2.20	3.0	0.002	0.52	0.0	0.03	21.26	0.00	2.101	10.03	1.95	3.3	96.6	0.1	1.22	0.34	0.77	0.77	2.05	116762	9286	57	2372	1	0	0	logfile
✔	8BC0	15958	2024-02-15	2022-10-14	3.09	3.54	2.95	3.5	0.004	0.59	0.0	0.04	13.16	0.01	2.052	17.19	7.06	5.0	95.0	0.0	0.18	0.54	0.60	1.08	3.5	0.005	0.76	0.0	0.04	15.74	0.01	2.038	22.77	4.34	5.6	94.4	0.0	0.05	0.75	0.54	0.61	1.18	10861	1316	4	0	6	0	0	logfile
✔	8BC1	15959	2024-02-14	2022-10-14	2.93	3.48	2.73	3.5	0.002	0.46	0.0	0.04	10.38	0.00	2.265	7.96	3.43	2.9	97.1	0.0	1.53	0.38	0.52	1.52	3.5	0.003	0.77	0.0	0.04	15.38	0.00	2.154	14.59	2.57	3.6	96.4	0.0	0.74	0.98	0.39	0.54	1.19	8684	1054	4	0	6	0	0	logfile
✔	8BC4	15962	2024-02-16	2022-10-14	2.7	2.11	2.15	2.5	0.015	2.14	1.0	0.11	19.24	0.02	2.310	4.45	10.79	4.1	95.8	0.0	-4.88	0.59	0.76	3.14	2.5	0.004	0.64	0.0	0.05	17.66	0.00	2.105	5.75	2.43	1.2	98.8	0.0	0.58	0.64	0.61	0.79	3.97	16440	2167	29	0	9	270	0	logfile
✔	8ES8	28571	2024-02-15	2022-10-13	2.65	2.71	2.68	2.7	0.004	0.71	0.0	0.05	14.96	0.00	2.142	6.32	0.08	3.4	96.6	0.0	0.76	0.72	0.86	3.52	2.7	0.004	0.70	0.0	0.05	15.91	0.00	2.144	7.46	1.86	4.1	95.8	0.1	0.67	0.96	0.72	0.89	3.28	11976	1464	21	0	19	0	0	logfile
✔	8ES9	28572	2024-02-16	2022-10-13	3.25	3.52	3.21	3.4	0.005	0.70	0.0	0.05	14.59	0.00	2.176	6.90	0.00	5.4	94.6	0.1	0.26	0.71	0.84	2.76	3.4	0.003	0.63	0.0	0.05	15.26	0.00	2.108	7.54	2.03	5.0	94.9	0.1	0.71	0.35	0.73	0.87	2.47	11844	1459	17	0	14	0	0	logfile
✔	8ES7	28570	2024-02-14	2022-10-13	3.04	3.42	3.02	3.3	0.004	0.68	0.0	0.05	16.73	0.00	2.133	6.93	0.10	5.9	94.1	0.0	0.86	0.67	0.85	3.35	3.3	0.004	0.62	0.0	0.04	15.38	0.00	2.173	6.30	1.89	5.5	94.5	0.0	0.93	0.31	0.67	0.87	3.19	8822	1080	18	0	19	0	0	logfile
✔	8ESB	28574	2024-02-13	2022-10-13	3.12	3.62	3.10	3.5	0.006	0.63	0.0	0.05	14.31	0.00	2.245	5.09	0.00	4.5	95.5	0.0	-2.63	0.67	0.86	3.83	3.5	0.004	0.55	0.0	0.04	16.05	0.00	2.222	3.78	2.71	3.2	96.8	0.0	0.14	0.36	0.66	0.86	3.42	3140	384	3	0	0	0	0	logfile
✔	8ESC	28575	2024-02-24	2022-10-13	3.1	3.13	3.05	3.2	0.002	0.51	0.0	0.04	14.00	0.00	2.156	6.96	0.02	5.0	95.0	0.0	-0.12	0.79	0.79	2.12	3.1	0.002	0.54	0.0	0.04	15.89	0.00	2.036	8.62	1.44	4.9	95.1	0.0	0.57	0.49	0.83	0.83	1.77	43279	5300	7	0	3	0	0	logfile
✔	8BBE	15954	2024-02-17	2022-10-12	3.5	4.13	3.62	3.7	0.013	1.80	8.0	0.10	13.29	0.02	2.550	0.22	0.05	4.2	95.8	0.0	-1.28	0.77	0.66	1.77	3.7	0.004	0.71	0.0	0.04	15.40	0.00	2.127	14.38	1.65	4.5	95.5	0.0	0.03	1.81	0.83	0.77	1.15	20181	2513	4	0	6	0	0	logfile
✔	8ERQ	28558	2024-02-13	2022-10-12	3.3	3.48	3.22	3.5	0.010	1.32	0.0	0.07	10.04	0.01	2.265	2.12	0.95	3.8	96.2	0.0	0.38	0.63	0.76	4.07	3.5	0.002	0.61	0.0	0.04	14.03	0.00	2.255	3.75	3.48	3.8	96.2	0.0	-0.10	1.85	0.64	0.83	3.62	3178	423	3	0	1	0	0	logfile

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