Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ERQ	28558	2024-02-13	2022-10-12	3.3	3.48	3.22	3.5	0.010	1.32	0.0	0.07	10.04	0.01	2.265	2.12	0.95	3.8	96.2	0.0	0.38	0.63	0.76	4.07	3.5	0.002	0.61	0.0	0.04	14.03	0.00	2.255	3.75	3.48	3.8	96.2	0.0	-0.10	1.85	0.64	0.83	3.62	3178	423	3	0	1	0	0	logfile
✔	8ERL	28554	2024-02-13	2022-10-12	3.9	4.58	3.40	4.1	0.005	1.28	0.0	0.07	15.42	0.01	2.296	4.84	0.27	9.5	90.5	0.0	-3.82	0.86	0.76	-0.02	4.1	0.003	0.73	0.0	0.04	15.84	0.00	2.113	23.33	3.43	8.8	91.2	0.0	-2.32	1.03	0.87	0.79	-0.33	6600	830	2	0	0	0	0	logfile
✔	8ERP	28557	2024-02-13	2022-10-12	3.7	3.96	3.35	4.0	0.004	0.86	0.0	0.04	19.42	0.01	2.016	7.49	0.00	5.8	94.2	0.0	0.16	0.66	0.80	2.15	4.0	0.003	0.70	0.0	0.04	16.89	0.01	1.993	5.96	2.86	6.9	93.1	0.0	0.96	0.46	0.68	0.81	1.88	6056	728	4	0	26	0	0	logfile
✔	8ERT	28560	2024-02-21	2022-10-12	3.3	3.67	3.52	3.7	0.003	0.59	0.0	0.04	14.14	0.01	2.203	10.41	0.00	8.1	91.9	0.1	0.22	0.70	0.81	1.27	3.7	0.003	0.61	0.0	0.04	16.52	0.01	2.209	12.15	0.82	8.2	91.8	0.0	0.62	0.41	0.71	0.84	0.88	16359	1995	21	0	0	0	0	logfile
✔	8BB1	15953	2024-02-16	2022-10-12	2.8	3.65	2.86	3.3	0.003	0.42	0.0	0.04	10.05	0.01	2.226	3.53	0.71	2.0	98.0	0.0	0.54	0.89	0.88	4.07	3.3	0.003	0.60	0.0	0.04	12.66	0.00	2.155	8.21	0.88	2.5	97.5	0.0	0.92	2.28	0.88	0.86	3.52	16168	2100	20	0	4	24	0	logfile
✔	8H5B	34490	2024-02-14	2022-10-12	4.03	4.23	3.98	4.1	0.005	0.74	0.0	0.04	12.98	0.01	1.882	23.17	0.00	4.5	95.5	0.0	-1.67	0.79	0.73	—	4.1	0.004	0.70	0.0	0.04	13.37	0.00	2.138	21.09	0.00	4.0	96.0	0.0	0.54	1.03	0.78	0.72	—	8570	1075	2	0	0	0	0	logfile
✔	8BA8	15940	2024-02-13	2022-10-11	3.4	3.96	3.30	3.3	0.004	0.77	0.0	0.04	16.39	0.01	0.942	10.49	0.07	5.8	94.2	0.0	-2.24	0.89	0.85	2.19	3.3	0.003	0.63	0.0	0.04	15.74	0.00	0.932	10.12	0.94	2.7	97.3	0.0	1.94	0.43	0.90	0.86	1.89	110159	7336	35	0	49	7	55734	logfile
✔	8H4U	34484	2024-02-13	2022-10-11	3.5	3.38	3.50	3.4	0.002	0.59	0.0	0.04	18.36	0.00	2.218	8.59	1.28	5.1	94.9	0.0	0.05	0.75	0.82	1.33	3.4	0.004	0.60	0.0	0.04	18.54	0.00	2.240	9.22	2.45	6.0	94.0	0.0	1.82	1.01	0.74	0.82	0.82	7944	959	1	0	0	0	0	logfile
✔	8BA7	15939	2024-02-13	2022-10-11	4.4	4.48	4.42	4.2	0.002	0.52	3.0	0.06	13.64	0.00	1.888	12.29	0.00	3.6	96.4	0.0	1.23	0.85	0.82	—	4.2	0.003	0.53	2.0	0.06	13.81	0.00	1.853	12.19	0.00	4.2	95.8	0.0	1.22	0.30	0.85	0.82	—	109676	7336	14	0	0	0	55706	logfile
✔	8BA9	15942	2024-02-16	2022-10-11	3.7	3.96	3.79	3.8	0.003	0.75	0.0	0.04	15.68	0.01	1.191	9.39	0.10	3.9	96.1	0.0	-0.84	0.83	0.84	1.69	3.8	0.004	0.68	0.0	0.04	15.35	0.00	1.036	9.54	1.00	2.6	97.4	0.0	1.39	0.98	0.84	0.85	1.26	120442	8008	35	0	42	0	60991	logfile
✔	8BAH	15948	2024-02-15	2022-10-11	4.13	4.37	4.14	4.2	0.003	0.54	0.0	0.04	10.66	0.00	1.951	2.05	0.00	2.2	97.8	0.0	0.61	0.73	0.72	—	4.2	0.004	0.55	0.0	0.04	12.04	0.00	1.867	9.58	0.00	5.5	94.5	0.0	-0.15	0.68	0.73	0.74	—	13675	855	5	0	4	0	6801	logfile
✔	8H4i	34478	2024-02-13	2022-10-10	3.06	2.31	3.09	3.0	0.012	1.04	0.0	0.06	13.70	0.01	2.147	4.38	0.00	5.3	94.7	0.0	-0.34	0.77	0.83	3.22	3.0	0.003	0.59	0.0	0.04	15.07	0.00	2.119	4.13	0.48	3.1	96.9	0.0	0.57	0.33	0.78	0.84	2.26	7965	1035	5	0	1	0	0	logfile
✔	8H4L	34480	2024-02-14	2022-10-10	3.07	2.31	3.09	3.0	0.007	0.90	0.0	0.05	12.79	0.01	2.069	4.07	0.23	4.4	95.6	0.0	-0.34	0.77	0.81	3.85	3.0	0.002	0.53	0.0	0.04	14.28	0.00	2.136	3.88	1.38	3.2	96.8	0.0	1.32	0.35	0.77	0.82	3.03	8171	1059	5	0	1	0	0	logfile
✔	8H4K	34479	2024-02-13	2022-10-10	3.1	2.32	3.10	3.1	0.006	0.76	0.0	0.05	13.50	0.00	2.061	4.14	0.00	5.5	94.5	0.0	0.17	0.77	0.81	3.47	3.1	0.002	0.53	0.0	0.04	14.84	0.00	2.138	4.21	1.65	2.9	97.1	0.0	1.28	0.29	0.76	0.82	2.48	8078	1055	5	0	1	0	0	logfile
✔	8H3M	34469	2024-02-18	2022-10-09	2.48	2.22	2.25	2.2	0.004	0.65	0.0	0.05	16.22	0.00	2.218	5.84	2.03	3.6	96.1	0.3	-0.03	0.72	0.87	4.26	2.2	0.003	0.57	0.0	0.05	15.99	0.00	2.235	5.93	2.56	3.6	96.1	0.2	0.31	1.10	0.72	0.87	4.33	20936	2662	8	0	22	0	0	logfile
✔	8H3N	34470	2024-02-20	2022-10-09	2.73	2.40	2.50	2.5	0.009	0.86	0.0	0.05	17.75	0.01	1.912	6.51	4.45	7.2	92.6	0.2	-1.36	0.73	0.85	4.07	2.5	0.003	0.61	0.0	0.05	17.12	0.00	2.129	7.05	4.56	5.3	94.6	0.2	-0.39	1.11	0.73	0.86	3.76	26338	3347	10	0	28	0	0	logfile
✔	8H3V	34475	2024-02-24	2022-10-09	4.5	4.64	4.91	4.5	0.030	2.79	84.0	0.14	20.27	0.02	0.972	180.47	7.38	33.8	60.7	5.5	-7.34	0.74	0.61	—	4.5	0.004	0.99	0.0	0.05	18.15	0.01	2.080	24.14	0.02	14.9	84.4	0.7	-3.78	1.37	0.77	0.68	—	46048	5325	15	208	0	0	0	logfile
✔	8H3Q	34473	2024-02-16	2022-10-09	3.76	2.75	3.79	2.8	0.007	1.14	5.0	0.06	20.58	0.01	2.017	18.05	10.27	11.0	88.1	0.9	-1.84	0.70	0.65	0.62	1.9	0.004	0.85	0.0	0.05	19.14	0.01	2.021	20.44	4.62	9.4	90.4	0.3	-0.25	1.26	0.71	0.71	0.71	15511	1956	4	0	3	0	0	logfile
✔	8H40	34476	2024-02-22	2022-10-09	3.6	4.14	3.56	3.3	0.059	3.51	163.0	0.18	20.66	0.02	0.727	175.67	4.55	35.8	60.4	3.8	-7.43	0.85	0.79	0.76	3.3	0.004	0.94	0.0	0.05	20.72	0.01	1.897	22.17	3.19	11.8	87.6	0.6	-2.66	1.95	0.87	0.81	0.98	34833	4130	11	120	0	0	0	logfile
✔	8EQS	28544	2024-02-13	2022-10-09	3.1	3.53	3.10	3.4	0.005	0.74	0.0	0.04	19.17	0.00	2.219	12.31	0.00	2.8	97.2	0.0	0.01	0.66	0.82	2.72	3.4	0.003	0.52	0.0	0.04	20.40	0.00	2.149	8.72	1.80	2.3	97.7	0.0	2.08	1.14	0.70	0.87	2.22	3654	438	6	0	2	0	0	logfile

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