Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8H3Q	34473	2024-02-16	2022-10-09	3.76	2.75	3.79	2.8	0.007	1.14	5.0	0.06	20.58	0.01	2.017	18.05	10.27	11.0	88.1	0.9	-1.84	0.70	0.65	0.62	1.9	0.004	0.85	0.0	0.05	19.14	0.01	2.021	20.44	4.62	9.4	90.4	0.3	-0.25	1.26	0.71	0.71	0.71	15511	1956	4	0	3	0	0	logfile
✔	8EQU	28546	2024-02-13	2022-10-09	2.8	3.03	2.80	3.0	0.004	0.79	0.0	0.04	14.51	0.00	2.317	8.25	0.00	1.9	98.1	0.0	-0.12	0.64	0.76	2.12	3.0	0.003	0.63	0.0	0.03	14.49	0.00	2.123	7.75	2.10	1.9	98.1	0.0	0.20	1.09	0.68	0.83	2.31	5764	542	10	0	318	0	0	logfile
✔	8H36	34452	2024-02-22	2022-10-08	4.6	3.34	4.57	3.3	0.008	1.03	15.0	0.07	17.13	0.00	2.201	13.04	14.08	8.8	89.7	1.5	-3.21	0.53	0.50	—	1.9	0.003	0.77	0.0	0.05	13.08	0.00	2.067	18.80	0.00	8.4	91.3	0.3	-1.15	1.09	0.58	0.65	—	28650	3507	10	0	6	0	0	logfile
✔	8H3H	34468	2024-02-19	2022-10-08	3.15	3.23	3.11	3.2	0.007	0.92	1.0	0.05	16.37	0.01	1.854	12.44	3.65	9.2	90.3	0.4	-4.15	0.80	0.87	3.32	3.2	0.002	0.63	1.0	0.04	16.57	0.00	2.148	6.62	1.93	6.8	93.0	0.2	-0.72	0.43	0.81	0.89	2.97	25408	3174	10	0	6	0	0	logfile
✔	8H3E	34465	2024-02-19	2022-10-08	3.06	3.44	3.40	3.3	0.004	0.51	0.0	0.04	16.80	0.00	1.960	8.20	0.22	5.4	94.6	0.0	-2.27	0.81	0.89	2.90	3.3	0.002	0.54	0.0	0.05	16.83	0.00	2.143	2.01	2.91	4.0	96.0	0.0	-1.69	0.90	0.81	0.88	2.62	24957	3159	6	0	18	0	0	logfile
✔	8H3D	34464	2024-02-19	2022-10-08	3.27	3.75	3.39	3.6	0.004	0.59	3.0	0.05	16.86	0.00	2.173	3.86	0.26	6.4	93.6	0.0	-3.11	0.77	0.85	1.54	3.6	0.005	0.66	0.0	0.05	17.16	0.00	2.120	4.95	4.36	8.6	91.4	0.0	-3.10	0.30	0.78	0.87	1.65	24448	3103	6	0	13	0	0	logfile
✔	8EQN	28540	2024-02-13	2022-10-08	3.7	3.82	3.76	3.8	0.019	1.63	0.0	0.09	10.32	0.01	2.390	0.43	0.00	1.3	98.7	0.0	1.44	0.79	0.86	3.46	3.7	0.004	0.67	0.0	0.05	15.62	0.00	2.110	9.74	2.89	2.7	97.3	0.0	1.82	0.87	0.79	0.87	2.63	107700	13980	60	0	0	0	0	logfile
✔	8H38	34455	2024-02-23	2022-10-08	4.25	4.19	4.35	4.3	0.004	0.70	2.0	0.05	13.05	0.00	1.986	10.28	2.22	6.5	92.8	0.7	-0.18	0.62	0.48	—	4.3	0.003	0.78	0.0	0.05	13.30	0.00	2.117	20.44	0.02	7.1	92.6	0.3	-0.31	4.31	0.67	0.64	—	37306	4639	15	0	4	0	0	logfile
✔	8H2T	34443	2024-02-16	2022-10-07	2.59	3.14	2.68	3.0	0.003	0.59	0.0	0.04	16.32	0.00	2.043	5.51	1.52	3.0	96.9	0.1	0.43	0.76	0.86	4.68	3.0	0.003	0.56	0.0	0.04	16.46	0.00	2.067	5.62	1.78	2.8	97.0	0.2	0.47	0.13	0.76	0.86	4.42	14370	1776	9	0	9	0	0	logfile
✔	8EQJ	28538	2024-02-13	2022-10-07	3.0	3.22	2.93	3.2	0.005	0.94	0.0	0.04	24.65	0.01	2.219	9.35	0.00	2.7	97.3	0.0	-0.19	0.47	0.74	2.78	3.2	0.003	0.51	0.0	0.04	18.05	0.00	2.196	8.26	2.87	1.1	98.9	0.0	1.54	1.15	0.63	0.88	3.15	3232	384	4	0	4	0	0	logfile
✔	8EQF	28537	2024-02-13	2022-10-07	3.16	2.26	3.09	2.1	0.005	0.57	0.0	0.04	14.57	0.00	1.998	5.82	0.00	5.5	94.5	0.0	-0.38	0.75	0.81	3.52	2.1	0.003	0.57	0.0	0.04	14.42	0.00	2.169	6.28	1.10	2.9	97.1	0.0	-0.02	0.88	0.76	0.82	3.73	3348	422	4	0	2	0	0	logfile
✔	8B9K	15934	2024-02-16	2022-10-06	4.04	6.74	4.22	4.3	0.004	1.15	0.0	0.04	15.72	0.00	2.160	17.25	5.04	10.5	88.9	0.6	-0.89	0.80	0.52	—	4.4	0.003	0.96	0.0	0.04	15.23	0.00	2.112	23.97	0.24	10.7	88.9	0.4	-1.32	1.34	0.90	0.81	—	8390	951	3	40	2	0	0	logfile
✔	8EPX	28534	2024-02-16	2022-10-06	3.15	3.30	3.06	3.2	0.004	0.58	0.0	0.04	24.05	0.00	1.297	7.63	4.99	5.1	94.9	0.0	-0.23	0.79	0.84	0.94	3.2	0.003	0.52	0.0	0.04	23.81	0.00	2.172	6.76	4.63	5.8	94.2	0.0	0.42	0.18	0.79	0.84	1.14	15457	1672	14	144	2	0	0	logfile
✔	8EPQ	28533	2024-02-19	2022-10-06	3.3	3.96	3.41	3.0	0.004	0.68	0.0	0.05	14.31	0.00	2.117	7.20	0.12	3.2	96.8	0.0	0.04	0.85	0.83	2.38	3.0	0.004	0.62	0.0	0.05	13.67	0.00	2.144	9.03	1.50	4.7	95.3	0.0	0.14	0.41	0.86	0.85	2.13	24287	2984	21	0	66	0	0	logfile
✔	8EPN	28531	2024-02-19	2022-10-06	2.8	3.18	2.88	2.9	0.005	0.75	0.0	0.05	18.17	0.00	2.214	6.72	0.84	2.7	97.3	0.0	-0.10	0.84	0.87	2.78	2.9	0.002	0.59	0.0	0.05	14.45	0.00	2.180	6.48	1.57	2.6	97.4	0.0	0.54	0.37	0.83	0.86	2.01	25077	2991	39	0	126	0	0	logfile
✔	8H2G	34437	2024-02-14	2022-10-06	3.01	3.20	3.02	3.2	0.003	0.57	0.0	0.04	16.85	0.00	1.613	9.49	0.61	3.8	96.2	0.0	0.07	0.64	0.76	1.58	3.2	0.003	0.59	0.0	0.04	17.36	0.00	2.039	9.60	5.82	4.2	95.8	0.0	0.09	1.34	0.62	0.76	1.64	9023	1145	6	0	1	0	0	logfile
✔	8B9i	15932	2024-02-16	2022-10-06	2.95	3.92	2.99	3.5	0.011	1.24	0.0	0.05	19.48	0.01	1.963	11.55	2.31	3.6	96.3	0.1	0.95	0.84	0.75	2.31	3.6	0.003	0.69	0.0	0.04	18.26	0.00	1.898	10.87	1.62	3.7	96.2	0.1	1.08	1.79	0.84	0.86	2.24	8026	984	4	11	3	5	0	logfile
✔	8B9G	15931	2024-02-16	2022-10-06	2.86	3.74	2.90	3.4	0.005	1.20	0.0	0.04	17.07	0.00	1.632	9.22	1.43	2.4	97.4	0.2	1.29	0.85	0.82	3.17	3.3	0.002	0.61	0.0	0.04	16.68	0.00	2.179	7.04	0.36	1.8	98.1	0.1	1.77	0.98	0.87	0.87	2.44	7782	953	3	10	2	5	0	logfile
✔	8B9L	15935	2024-02-15	2022-10-06	3.45	4.42	3.50	3.9	0.004	0.78	1.0	0.05	17.52	0.02	2.155	14.92	1.18	8.4	90.8	0.8	-0.21	0.77	0.59	0.69	3.9	0.003	0.89	0.0	0.05	17.27	0.01	2.130	18.43	4.33	8.5	90.7	0.8	-0.38	1.82	0.85	0.78	0.55	6826	862	1	0	0	0	0	logfile
✔	8EPP	28532	2024-02-19	2022-10-06	3.1	3.64	3.26	2.9	0.004	0.59	0.0	0.05	16.17	0.00	2.217	7.58	0.35	3.6	96.2	0.1	0.11	0.84	0.84	2.03	2.9	0.003	0.55	0.0	0.05	14.73	0.00	2.191	8.18	2.96	4.5	95.4	0.1	0.17	0.36	0.85	0.85	1.94	23913	2939	21	0	66	0	0	logfile

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