Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EPQ	28533	2024-02-19	2022-10-06	3.3	3.96	3.41	3.0	0.004	0.68	0.0	0.05	14.31	0.00	2.117	7.20	0.12	3.2	96.8	0.0	0.04	0.85	0.83	2.38	3.0	0.004	0.62	0.0	0.05	13.67	0.00	2.144	9.03	1.50	4.7	95.3	0.0	0.14	0.41	0.86	0.85	2.13	24287	2984	21	0	66	0	0	logfile
✔	8EPA	28523	2024-02-13	2022-10-05	3.4	4.08	3.33	3.8	0.004	0.69	0.0	0.05	15.76	0.00	2.184	14.18	0.18	9.3	90.4	0.3	-2.16	0.75	0.75	1.53	3.8	0.003	0.72	0.0	0.05	16.01	0.00	2.179	15.50	2.87	8.2	91.5	0.3	-2.01	0.95	0.76	0.77	1.05	5045	637	6	0	2	0	0	logfile
✔	8B9C	15924	2024-02-15	2022-10-05	4.6	5.42	4.24	4.9	0.006	0.80	0.0	0.05	13.70	0.01	1.941	0.64	0.51	2.1	97.9	0.0	0.52	0.78	0.63	—	4.9	0.004	0.60	0.0	0.04	13.25	0.00	1.694	11.16	0.00	4.3	95.7	0.0	0.49	2.53	0.83	0.78	—	117985	7179	26	56	12	0	59018	logfile
✔	8B8T	15921	2024-02-13	2022-10-05	4.2	3.64	4.09	4.1	0.011	1.78	2.0	0.09	14.33	0.01	2.558	0.50	1.78	3.9	95.8	0.3	-1.08	0.73	0.77	—	4.0	0.004	0.73	0.0	0.04	13.62	0.00	2.133	7.84	0.00	3.6	96.4	0.0	0.54	0.51	0.73	0.77	—	7180	989	4	0	0	0	0	logfile
✔	8B9F	15930	2024-02-13	2022-10-05	3.93	4.21	3.90	4.1	0.005	0.74	1.0	0.06	13.42	0.00	2.185	8.71	1.45	2.4	97.3	0.3	-1.28	0.46	0.63	1.86	4.1	0.005	0.73	0.0	0.05	16.03	0.00	2.134	15.58	4.68	4.0	96.0	0.0	-0.66	1.36	0.49	0.71	2.00	5533	709	4	0	1	0	0	logfile
✔	8EoT	28467	2024-02-19	2022-10-04	3.3	4.07	3.37	3.6	0.004	0.63	0.0	0.05	15.75	0.00	2.009	5.09	6.03	5.5	94.4	0.1	-1.47	0.85	0.84	2.24	3.6	0.003	0.55	0.0	0.04	16.64	0.00	2.000	6.29	3.44	5.3	94.6	0.1	-0.42	0.45	0.90	0.91	1.81	25299	3061	10	77	3	0	0	logfile
✔	8B8K	15916	2024-02-15	2022-10-04	3.01	3.58	2.85	3.4	0.003	0.50	0.0	0.04	11.83	0.00	2.111	6.75	2.92	2.6	97.4	0.0	1.53	0.63	0.81	3.01	3.4	0.003	0.53	0.0	0.04	14.33	0.00	2.091	7.80	3.30	2.9	97.1	0.0	1.61	0.63	0.63	0.81	2.80	12324	1482	4	0	8	0	0	logfile
✔	8EoW	28487	2024-02-19	2022-10-04	3.9	4.29	3.96	4.2	0.003	0.57	0.0	0.04	16.05	0.00	2.211	8.15	0.35	4.0	96.0	0.0	1.45	0.65	0.72	1.03	4.2	0.005	0.71	0.0	0.04	16.69	0.00	2.134	10.82	4.85	5.3	94.7	0.0	1.15	0.33	0.67	0.77	1.03	24628	3372	8	0	0	0	0	logfile
✔	8B8M	15917	2024-02-15	2022-10-04	3.49	3.89	3.36	3.7	0.003	0.53	0.0	0.04	12.08	0.00	2.148	9.98	4.46	3.7	96.3	0.0	1.08	0.63	0.76	1.75	3.8	0.003	0.64	0.0	0.04	14.89	0.00	2.120	12.67	3.44	3.8	96.2	0.0	1.05	1.49	0.62	0.76	1.29	11758	1423	4	0	6	0	0	logfile
✔	8B8J	15914	2024-02-15	2022-10-04	2.96	3.60	2.92	3.4	0.003	0.46	0.0	0.04	9.83	0.00	2.211	6.94	1.25	2.4	97.6	0.0	2.21	0.60	0.76	1.84	3.4	0.005	0.67	0.0	0.04	13.33	0.00	2.167	10.20	2.12	2.7	97.3	0.0	1.69	1.46	0.63	0.80	2.08	11686	1418	4	0	6	0	0	logfile
✔	8B8G	15913	2024-02-15	2022-10-04	3.39	3.99	3.34	3.8	0.004	0.56	0.0	0.04	13.75	0.01	2.096	11.04	7.59	4.2	95.8	0.0	0.87	0.66	0.82	2.32	3.8	0.002	0.54	0.0	0.04	15.18	0.00	2.170	10.34	3.87	3.2	96.8	0.0	1.45	1.89	0.64	0.80	1.70	12086	1464	2	0	0	0	0	logfile
✔	8H1T	34431	2024-02-17	2022-10-04	3.0	3.40	1.70	3.2	0.003	0.53	0.0	0.04	24.61	0.00	1.336	10.82	0.00	2.2	97.8	0.0	2.26	0.72	0.67	1.40	3.2	0.004	0.63	0.0	0.04	26.21	0.00	2.200	11.05	3.47	3.2	96.8	0.0	1.92	0.63	0.75	0.73	1.35	17365	1323	14	334	0	0	0	logfile
✔	8EoP	28451	2024-02-15	2022-10-04	3.7	3.39	3.69	3.8	0.003	0.62	0.0	0.04	15.22	0.00	2.001	6.86	0.00	5.6	94.3	0.1	0.22	0.60	0.77	1.59	3.8	0.002	0.58	0.0	0.04	15.38	0.00	1.992	7.16	2.09	5.3	94.7	0.0	0.59	1.38	0.63	0.78	1.41	13265	1687	4	0	15	0	0	logfile
✔	8EoR	28465	2024-02-15	2022-10-04	2.67	2.82	2.67	2.9	0.004	0.64	0.0	0.04	13.33	0.00	2.303	2.64	0.45	2.2	97.8	0.0	0.50	0.60	0.75	4.68	2.9	0.004	0.63	0.0	0.05	15.01	0.00	2.265	4.31	2.31	3.0	97.0	0.0	0.39	1.17	0.74	0.85	4.16	12522	1596	9	0	12	0	0	logfile
✔	8B8Q	15919	2024-02-15	2022-10-04	2.94	3.52	2.88	3.4	0.004	0.54	0.0	0.04	12.63	0.00	2.126	11.28	7.93	4.8	95.2	0.0	0.94	0.66	0.80	2.92	3.4	0.006	0.72	0.0	0.05	15.31	0.01	2.081	14.41	4.37	5.3	94.7	0.0	0.43	1.02	0.68	0.82	2.94	11370	1382	4	0	6	0	0	logfile
✔	8EoJ	28377	2024-02-14	2022-10-03	3.07	3.47	3.19	3.2	0.002	0.55	0.0	0.04	11.26	0.00	2.216	7.60	3.76	4.1	95.9	0.0	-1.48	0.69	0.60	0.95	3.2	0.003	0.64	0.0	0.04	14.46	0.00	2.117	15.09	2.64	4.1	95.9	0.0	-0.15	1.71	0.70	0.60	0.81	9327	1219	2	0	0	0	0	logfile
✔	8B7Y	15905	2024-02-21	2022-10-03	3.0	2.45	2.96	2.8	0.005	0.76	4.0	0.05	23.88	0.01	1.792	5.28	3.80	5.7	93.5	0.8	-1.45	0.77	0.78	2.97	2.8	0.006	0.78	4.0	0.04	23.54	0.01	1.781	11.44	3.59	5.4	94.4	0.2	-0.94	1.55	0.78	0.80	2.81	141008	5315	70	4614	248	28	0	logfile
✔	8EoG	28375	2024-02-17	2022-10-03	3.3	3.80	—	3.5	0.003	0.59	0.0	0.04	17.72	0.00	2.193	11.78	0.56	7.5	92.4	0.1	-1.06	0.63	0.79	2.19	3.5	0.002	0.60	0.0	0.04	17.40	0.00	2.187	10.24	3.17	7.0	92.9	0.1	-0.68	0.38	0.65	0.86	1.89	19729	2417	8	0	21	3	0	logfile
✔	8Eoi	28376	2024-02-20	2022-10-03	3.4	4.02	—	3.5	0.002	0.51	0.0	0.04	11.72	0.00	2.137	8.14	2.73	5.4	94.6	0.0	0.20	0.78	0.84	2.39	3.5	0.002	0.57	0.0	0.04	13.29	0.00	2.174	8.57	2.18	5.6	94.4	0.0	0.28	0.32	0.79	0.89	2.15	28721	3562	16	0	8	0	0	logfile
✔	8EoK	28378	2024-02-18	2022-10-03	3.53	3.92	3.87	3.8	0.003	0.60	0.0	0.05	14.89	0.00	2.102	7.18	0.04	5.7	94.3	0.0	-1.09	0.80	0.81	2.06	3.9	0.004	0.61	0.0	0.04	16.04	0.00	2.012	7.54	2.28	6.5	93.5	0.0	-0.99	0.32	0.81	0.82	1.94	22233	2792	9	0	6	0	0	logfile

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