Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8B7Y	15905	2024-02-21	2022-10-03	3.0	2.45	2.96	2.8	0.005	0.76	4.0	0.05	23.88	0.01	1.792	5.28	3.80	5.7	93.5	0.8	-1.45	0.77	0.78	2.97	2.8	0.006	0.78	4.0	0.04	23.54	0.01	1.781	11.44	3.59	5.4	94.4	0.2	-0.94	1.55	0.78	0.80	2.81	141008	5315	70	4614	248	28	0	logfile
✔	8Eoi	28376	2024-02-20	2022-10-03	3.4	4.02	—	3.5	0.002	0.51	0.0	0.04	11.72	0.00	2.137	8.14	2.73	5.4	94.6	0.0	0.20	0.78	0.84	2.39	3.5	0.002	0.57	0.0	0.04	13.29	0.00	2.174	8.57	2.18	5.6	94.4	0.0	0.28	0.32	0.79	0.89	2.15	28721	3562	16	0	8	0	0	logfile
✔	8EoG	28375	2024-02-17	2022-10-03	3.3	3.80	—	3.5	0.003	0.59	0.0	0.04	17.72	0.00	2.193	11.78	0.56	7.5	92.4	0.1	-1.06	0.63	0.79	2.19	3.5	0.002	0.60	0.0	0.04	17.40	0.00	2.187	10.24	3.17	7.0	92.9	0.1	-0.68	0.38	0.65	0.86	1.89	19729	2417	8	0	21	3	0	logfile
✔	8B7V	15903	2024-02-14	2022-10-03	3.0	3.71	2.99	3.4	0.015	1.80	8.0	0.11	15.92	0.02	2.409	0.05	1.76	2.6	96.7	0.6	-0.16	0.76	0.73	6.06	3.4	0.004	0.65	0.0	0.04	16.06	0.00	2.163	6.28	0.49	2.0	97.9	0.1	-0.61	1.03	0.84	0.90	5.60	10050	1263	3	0	0	0	0	logfile
✔	8EoJ	28377	2024-02-14	2022-10-03	3.07	3.47	3.19	3.2	0.002	0.55	0.0	0.04	11.26	0.00	2.216	7.60	3.76	4.1	95.9	0.0	-1.48	0.69	0.60	0.95	3.2	0.003	0.64	0.0	0.04	14.46	0.00	2.117	15.09	2.64	4.1	95.9	0.0	-0.15	1.71	0.70	0.60	0.81	9327	1219	2	0	0	0	0	logfile
✔	8EoN	28405	2024-02-21	2022-10-03	3.6	3.31	3.96	3.2	0.009	0.76	1.0	0.05	13.95	0.01	1.812	13.47	0.02	10.1	89.5	0.4	-1.79	0.49	0.72	1.78	3.2	0.009	0.72	1.0	0.05	16.14	0.01	1.815	13.66	3.75	10.2	89.4	0.4	-1.98	1.20	0.50	0.74	1.43	95688	12711	48	0	0	0	0	logfile
✔	8H1C	34427	2024-02-17	2022-10-02	4.5	5.28	4.53	4.4	0.008	0.81	0.0	0.05	17.95	0.00	2.204	8.17	4.42	7.2	92.8	0.0	-3.24	0.87	0.77	—	4.4	0.002	0.62	0.0	0.04	16.55	0.00	2.122	10.01	0.00	4.7	95.3	0.0	-0.23	0.92	0.89	0.84	—	18483	1966	4	142	2	0	0	logfile
✔	8EoB	28333	2024-02-14	2022-10-02	3.1	3.53	3.19	3.4	0.005	0.61	0.0	0.04	11.57	0.00	1.945	7.00	1.78	2.6	97.4	0.0	0.42	0.76	0.84	3.12	3.4	0.002	0.48	0.0	0.04	13.82	0.00	1.997	7.00	1.96	2.4	97.6	0.0	0.80	0.51	0.76	0.83	2.60	10141	1245	4	0	4	0	0	logfile
✔	8EoA	28332	2024-02-15	2022-10-02	3.9	4.51	3.97	4.3	0.004	0.58	0.0	0.04	11.61	0.00	1.718	7.88	1.64	3.4	96.6	0.0	0.27	0.82	0.81	1.51	4.2	0.003	0.79	0.0	0.04	15.30	0.00	1.983	13.52	1.56	2.8	97.2	0.0	-0.30	1.55	0.82	0.83	1.18	11535	1421	5	0	4	0	0	logfile
✔	8H16	34426	2024-02-18	2022-09-30	3.35534	3.37	3.29	3.4	0.006	0.86	0.0	0.06	13.41	0.01	2.223	3.00	0.00	3.0	97.0	0.0	-0.98	0.75	0.83	3.12	3.4	0.003	0.55	0.0	0.04	14.48	0.00	2.177	4.71	2.39	3.0	97.0	0.0	0.00	1.40	0.76	0.85	2.83	21934	2754	6	0	32	0	0	logfile
✔	8H13	34423	2024-02-18	2022-09-30	4.05	4.03	4.00	4.0	0.004	0.86	0.0	0.05	14.19	0.01	2.254	3.85	0.83	5.0	95.0	0.0	-1.27	0.76	0.79	—	4.0	0.004	0.64	0.0	0.04	13.76	0.00	2.166	7.83	0.00	4.7	95.3	0.0	-0.43	0.43	0.77	0.80	—	22113	2793	6	0	21	0	0	logfile
✔	8H12	34422	2024-02-19	2022-09-30	3.44681	3.52	3.40	3.5	0.006	0.81	0.0	0.06	13.96	0.01	2.253	2.68	0.00	4.0	96.0	0.0	-2.04	0.71	0.84	3.55	3.5	0.003	0.56	0.0	0.05	14.96	0.00	2.072	4.67	2.25	3.1	96.9	0.0	-0.60	0.32	0.72	0.85	3.01	24221	3022	9	0	45	0	0	logfile
✔	8H0W	34416	2024-02-24	2022-09-30	4.6	4.58	4.31	3.0	0.006	0.82	0.0	0.05	21.42	0.01	1.953	10.39	0.02	3.8	96.1	0.1	-0.59	0.78	0.55	—	3.0	0.004	0.69	0.0	0.04	20.97	0.00	1.884	18.44	0.00	4.9	95.1	0.0	-0.18	0.89	0.79	0.60	—	46364	4766	30	415	9	0	0	logfile
✔	8H14	34424	2024-02-19	2022-09-30	3.39	3.39	3.33	3.4	0.005	0.95	6.0	0.06	13.87	0.01	2.177	2.50	1.35	3.6	96.4	0.0	-0.84	0.78	0.84	2.92	3.4	0.005	0.62	0.0	0.05	14.30	0.00	2.187	3.75	1.87	3.3	96.7	0.0	-0.32	0.39	0.80	0.88	2.82	24750	3087	6	0	45	0	0	logfile
✔	8H15	34425	2024-02-18	2022-09-30	3.14182	3.18	3.11	3.2	0.011	1.03	1.0	0.07	14.03	0.01	2.182	2.84	0.00	5.5	94.5	0.0	-1.79	0.75	0.83	3.70	3.2	0.002	0.54	0.0	0.04	15.01	0.00	2.121	4.29	2.08	3.2	96.8	0.0	0.02	1.39	0.75	0.85	2.78	22813	2888	6	0	18	0	0	logfile
✔	8ENR	28277	2024-02-13	2022-09-30	3.8	4.03	4.04	4.3	0.004	0.80	0.0	0.05	14.88	0.00	2.204	17.13	0.89	0.7	99.3	0.0	1.04	0.43	0.37	0.94	4.2	0.007	1.12	0.0	0.05	17.60	0.00	2.048	35.57	3.72	15.1	84.9	0.0	-3.97	2.50	0.51	0.50	2.45	6392	888	8	0	0	0	0	logfile
✔	8ENQ	28276	2024-02-13	2022-09-30	3.6	3.97	3.73	4.4	0.004	0.77	0.0	0.05	13.93	0.00	2.257	14.40	0.00	0.3	99.7	0.0	1.45	0.35	0.32	1.15	4.2	0.007	1.22	0.0	0.05	16.63	0.01	2.036	40.94	3.57	19.7	80.3	0.0	-4.84	2.02	0.47	0.54	3.33	5593	777	7	0	0	0	0	logfile
✔	8H11	34421	2024-02-19	2022-09-30	2.72	2.91	2.73	2.9	0.006	0.84	0.0	0.06	12.52	0.01	2.250	2.67	0.04	3.4	96.6	0.0	-1.16	0.79	0.85	3.06	2.9	0.003	0.67	0.0	0.05	14.10	0.00	2.172	4.62	1.29	2.8	97.2	0.0	0.26	0.32	0.79	0.86	2.64	23566	2945	7	0	39	0	0	logfile
✔	8H0Z	34419	2024-02-19	2022-09-30	2.99	3.23	3.00	3.2	0.008	0.92	0.0	0.06	12.60	0.01	2.229	3.18	0.00	4.5	95.5	0.0	-1.47	0.81	0.85	3.39	3.2	0.004	0.60	0.0	0.05	13.64	0.00	2.168	4.90	1.56	4.0	96.0	0.0	-0.65	0.32	0.81	0.87	3.05	25047	3102	9	0	51	0	0	logfile
✔	8H0X	34417	2024-02-19	2022-09-30	2.57	2.80	2.62	2.7	0.008	0.93	0.0	0.06	12.82	0.01	2.257	1.76	1.11	3.3	96.7	0.0	-0.82	0.81	0.86	3.97	2.7	0.003	0.61	0.0	0.05	13.98	0.00	2.169	3.45	1.89	3.1	96.9	0.0	-0.02	1.60	0.82	0.89	3.80	25122	3117	6	0	48	0	0	logfile

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