Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ENV	28280	2024-02-19	2022-09-30	3.42	3.76	3.61	3.8	0.004	0.68	0.0	0.05	13.29	0.01	2.047	13.13	0.04	7.3	92.5	0.2	-0.95	0.45	0.80	2.00	3.8	0.005	0.75	0.0	0.05	16.34	0.01	2.057	16.10	5.15	8.6	91.1	0.3	-1.23	0.46	0.45	0.81	1.57	80436	10698	36	0	0	0	0	logfile
✔	8B7Q	15899	2024-02-13	2022-09-30	4.02	4.26	3.86	4.2	0.003	0.60	0.0	0.04	9.87	0.00	2.234	4.41	2.94	3.9	95.6	0.5	0.29	0.66	0.80	—	4.2	0.003	0.66	0.0	0.04	12.58	0.00	2.170	8.68	0.00	3.9	96.1	0.0	1.55	1.23	0.68	0.82	—	3511	441	3	0	1	0	0	logfile
✔	8ENQ	28276	2024-02-13	2022-09-30	3.6	3.97	3.73	4.4	0.004	0.77	0.0	0.05	13.93	0.00	2.257	14.40	0.00	0.3	99.7	0.0	1.45	0.35	0.32	1.15	4.2	0.007	1.22	0.0	0.05	16.63	0.01	2.036	40.94	3.57	19.7	80.3	0.0	-4.84	2.02	0.47	0.54	3.33	5593	777	7	0	0	0	0	logfile
✔	8ENR	28277	2024-02-13	2022-09-30	3.8	4.03	4.04	4.3	0.004	0.80	0.0	0.05	14.88	0.00	2.204	17.13	0.89	0.7	99.3	0.0	1.04	0.43	0.37	0.94	4.2	0.007	1.12	0.0	0.05	17.60	0.00	2.048	35.57	3.72	15.1	84.9	0.0	-3.97	2.50	0.51	0.50	2.45	6392	888	8	0	0	0	0	logfile
✔	8H0i	34412	2024-02-16	2022-09-29	2.8	4.11	2.76	3.2	0.003	0.60	2.0	0.05	14.23	0.00	2.198	7.70	0.81	2.6	97.4	0.0	0.39	0.85	0.78	3.60	3.3	0.005	0.74	0.0	0.04	15.68	0.00	2.105	10.39	1.74	2.9	97.1	0.0	1.02	0.77	0.90	0.87	3.08	15018	1710	14	38	6	0	0	logfile
✔	8ENC	28270	2024-02-19	2022-09-29	3.6	4.10	3.52	3.6	0.003	0.57	0.0	0.04	14.18	0.00	1.869	7.14	0.08	3.0	97.0	0.0	1.79	0.60	0.87	1.67	3.6	0.003	0.60	0.0	0.04	15.55	0.00	1.946	8.83	0.96	2.7	97.3	0.0	1.80	0.43	0.61	0.89	1.72	23220	2929	13	0	10	0	0	logfile
✔	8ENE	28271	2024-02-16	2022-09-29	2.64	3.16	2.81	3.1	0.005	0.60	0.0	0.04	12.54	0.00	2.262	5.76	2.15	2.6	97.4	0.0	0.46	0.74	0.77	2.90	3.1	0.005	0.60	0.0	0.04	16.08	0.00	2.195	7.65	4.60	4.0	96.0	0.0	0.16	1.60	0.61	0.74	2.75	15404	1972	8	0	4	0	0	logfile
✔	8EMS	28263	2024-02-15	2022-09-28	2.65	2.85	2.63	2.9	0.003	0.53	0.0	0.04	13.28	0.00	2.217	7.84	0.15	3.6	96.4	0.0	-0.04	0.64	0.70	2.45	2.8	0.003	0.56	0.0	0.04	16.36	0.00	2.173	9.50	2.57	4.5	95.5	0.0	-0.23	0.35	0.64	0.71	1.99	12688	1560	4	0	2	0	0	logfile
✔	8EMV	28266	2024-02-15	2022-09-28	3.6	3.24	3.56	3.5	0.007	0.81	0.0	0.05	15.16	0.01	2.339	3.11	0.00	6.5	93.5	0.0	-4.26	0.71	0.84	2.37	3.5	0.002	0.54	0.0	0.04	16.49	0.00	2.323	4.54	2.14	3.5	96.5	0.0	-0.29	1.15	0.72	0.84	2.01	5949	747	1	0	1	0	0	logfile
✔	8EMR	28262	2024-02-13	2022-09-28	2.92	3.25	2.98	3.2	0.003	0.62	0.0	0.05	14.91	0.00	2.263	5.06	0.12	4.4	95.6	0.0	-0.58	0.74	0.79	2.30	3.3	0.003	0.60	0.0	0.04	15.66	0.00	2.199	6.65	1.69	6.4	93.6	0.0	-0.56	1.18	0.76	0.82	3.05	7685	952	4	0	6	0	0	logfile
✔	8EMX	28268	2024-02-19	2022-09-28	3.3	3.62	3.43	3.6	0.006	0.81	0.0	0.05	15.14	0.01	2.263	4.73	0.00	5.0	95.0	0.0	-4.74	0.73	0.83	2.54	3.7	0.004	0.61	0.0	0.04	16.75	0.00	2.058	8.78	3.24	4.7	95.3	0.0	-2.42	0.39	0.75	0.86	1.59	11714	1506	6	0	1	0	0	logfile
✔	8H07	34410	2024-02-21	2022-09-28	2.9	3.15	3.00	3.1	0.013	1.93	81.0	0.14	13.36	0.01	2.223	9.88	1.16	5.5	93.8	0.7	-0.33	0.64	0.66	2.00	3.1	0.004	0.69	0.0	0.04	15.00	0.00	2.036	8.53	2.64	5.9	94.1	0.0	-1.00	1.50	0.65	0.68	2.04	31320	4187	18	0	3	0	0	logfile
✔	8H08	34411	2024-02-22	2022-09-28	3.2	3.45	3.30	3.4	0.014	2.01	111.0	0.15	13.41	0.01	1.518	10.25	1.16	5.1	94.3	0.6	-0.73	0.66	0.67	1.46	3.4	0.005	0.73	1.0	0.05	14.75	0.00	2.075	9.90	1.69	3.4	96.6	0.0	-0.69	1.19	0.71	0.76	1.80	31277	4173	18	0	3	0	0	logfile
✔	8EMW	28267	2024-02-19	2022-09-28	3.5	3.87	3.57	3.9	0.008	0.91	1.0	0.06	15.24	0.01	2.248	6.63	0.00	6.1	93.9	0.0	-5.07	0.68	0.81	2.38	3.9	0.003	0.63	0.0	0.04	17.02	0.00	2.150	10.59	3.08	3.6	96.4	0.0	-2.33	1.28	0.71	0.83	1.33	11714	1506	6	0	1	0	0	logfile
✔	8EMQ	28259	2024-02-18	2022-09-28	1.66	1.59	1.68	1.6	0.011	1.31	0.0	0.07	15.25	0.01	0.733	5.98	1.91	0.6	99.4	0.0	2.37	0.66	0.78	9.05	1.6	0.003	0.59	0.0	0.04	14.39	0.00	2.083	3.47	0.64	1.2	98.8	0.0	5.32	0.38	0.81	0.89	8.89	37805	4128	72	0	30	2975	0	logfile
✔	8EN7	28269	2024-02-18	2022-09-28	1.68	1.48	1.71	1.6	0.012	1.29	0.0	0.07	15.67	0.01	0.731	8.76	1.27	1.2	98.8	0.0	2.40	0.61	0.75	8.54	1.6	0.002	0.54	0.0	0.04	15.27	0.00	2.235	4.30	0.63	1.2	98.8	0.0	5.30	0.41	0.75	0.85	7.89	37614	4128	54	0	6	2544	0	logfile
✔	8B71	15895	2024-02-14	2022-09-28	3.8	3.80	3.64	3.9	0.005	0.71	0.0	0.05	17.41	0.01	2.129	12.04	0.00	5.1	94.9	0.0	0.64	0.67	0.81	1.45	3.9	0.003	0.62	0.0	0.04	18.67	0.00	2.279	14.01	1.19	4.5	95.5	0.0	1.16	0.32	0.66	0.80	0.82	8694	1104	4	0	2	0	0	logfile
✔	8B70	15894	2024-02-14	2022-09-28	3.3	2.85	3.11	3.3	0.007	1.02	0.0	0.06	20.78	0.00	2.148	8.20	0.84	4.8	95.2	0.0	1.55	0.40	0.68	1.87	3.2	0.003	0.57	0.0	0.04	15.89	0.00	2.190	7.68	1.67	3.5	96.5	0.0	1.73	0.92	0.64	0.86	1.52	9258	1144	4	0	12	0	0	logfile
✔	8EMM	28254	2024-02-24	2022-09-28	2.1	1.96	—	2.0	0.010	1.02	0.0	0.05	22.76	0.02	1.741	4.46	1.11	3.4	96.5	0.1	-1.25	0.84	0.86	5.02	2.0	0.006	0.77	0.0	0.04	22.79	0.01	1.765	5.87	2.45	3.6	96.3	0.1	0.35	0.90	0.84	0.90	4.76	145735	5593	97	4558	354	3491	0	logfile
✔	8EMC	28244	2024-02-18	2022-09-27	3.6	4.48	3.74	3.5	0.004	0.73	0.0	0.04	13.02	0.00	1.997	13.13	0.01	4.7	95.0	0.3	0.35	0.87	0.80	1.42	3.5	0.003	0.59	0.0	0.04	14.55	0.00	2.093	13.82	0.87	4.6	95.2	0.2	0.81	1.28	0.91	0.82	1.45	73331	9328	14	0	0	0	0	logfile

• ← previous
• Page 124 of 588
• next →