Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GYW	34378	2024-02-13	2022-09-24	3.9	3.93	3.77	4.0	0.008	1.46	0.0	0.08	16.78	0.02	2.008	6.48	0.30	0.8	99.2	0.0	1.24	0.46	0.73	1.92	4.0	0.003	0.65	0.0	0.04	16.56	0.00	1.211	13.52	5.29	1.9	98.1	0.0	2.96	1.23	0.49	0.76	1.05	6076	760	4	0	6	0	0	logfile
✔	8GYX	34379	2024-02-13	2022-09-24	3.7	3.91	3.72	3.9	0.007	1.36	0.0	0.07	16.07	0.01	2.208	6.07	0.30	0.8	99.2	0.0	1.06	0.50	0.76	2.38	3.9	0.004	0.69	0.0	0.04	16.56	0.00	1.440	11.09	5.59	2.4	97.6	0.0	2.76	0.64	0.52	0.79	2.15	6118	760	4	0	6	0	0	logfile
✔	8EL8	28224	2024-02-13	2022-09-23	3.2	3.53	3.33	3.5	0.007	0.70	0.0	0.04	13.20	0.00	2.403	2.38	0.00	1.7	98.3	0.0	0.75	0.66	0.85	2.31	3.5	0.002	0.43	0.0	0.04	15.09	0.00	2.354	2.04	0.90	2.3	97.7	0.0	1.36	0.25	0.67	0.85	2.05	4467	597	2	0	0	0	0	logfile
✔	8EL7	28223	2024-02-13	2022-09-23	2.8	3.11	2.95	3.1	0.006	0.61	0.0	0.04	13.13	0.00	2.295	2.43	0.00	1.7	98.3	0.0	0.97	0.57	0.80	2.31	3.1	0.002	0.44	0.0	0.04	14.87	0.00	2.312	1.55	1.95	1.7	98.3	0.0	0.91	0.27	0.59	0.81	2.32	4562	604	2	0	0	5	0	logfile
✔	8EL9	28225	2024-02-17	2022-09-23	2.27	2.39	2.29	2.4	0.003	0.65	0.0	0.05	17.09	0.01	2.197	3.40	1.23	2.5	97.5	0.0	0.05	0.75	0.85	4.95	2.4	0.003	0.80	0.0	0.05	17.02	0.00	2.142	5.00	1.93	2.9	97.1	0.0	0.30	0.21	0.75	0.86	5.14	17429	1990	12	0	8	1015	0	logfile
✔	8GYK	34372	2024-02-17	2022-09-22	3.14	3.32	3.21	3.5	0.003	0.73	0.0	0.04	15.84	0.00	2.003	13.16	0.05	6.4	92.9	0.7	-2.07	0.50	0.70	1.66	3.5	0.003	0.69	0.0	0.04	17.37	0.00	1.914	12.00	2.48	6.2	93.2	0.6	-1.78	0.76	0.53	0.78	1.63	18103	2325	16	0	16	0	0	logfile
✔	8EKY	28217	2024-02-20	2022-09-22	3.47	4.00	3.78	3.9	0.004	0.68	1.0	0.05	14.66	0.00	2.211	6.02	0.00	3.2	96.8	0.1	-0.33	0.76	0.83	3.13	3.9	0.003	0.61	0.0	0.04	16.62	0.00	2.099	9.22	2.20	3.8	96.2	0.0	0.34	1.14	0.76	0.84	2.96	14605	1815	11	0	0	0	0	logfile
✔	8GXW	34363	2024-02-21	2022-09-21	2.7	2.30	2.77	2.5	0.006	0.55	0.0	0.04	14.20	0.00	1.843	5.14	0.00	2.4	97.6	0.0	0.98	0.66	0.81	3.89	2.5	0.003	0.56	0.0	0.04	17.39	0.00	1.967	7.26	2.82	1.9	98.1	0.0	0.96	1.09	0.71	0.84	3.63	29530	3788	15	0	4	0	0	logfile
✔	8GXU	34362	2024-02-21	2022-09-21	2.5	2.02	2.54	2.3	0.007	0.57	0.0	0.05	14.57	0.01	1.855	4.64	0.00	3.2	96.8	0.0	0.82	0.64	0.79	4.52	2.2	0.004	0.61	0.0	0.04	17.49	0.01	2.094	6.42	1.62	2.5	97.5	0.0	0.92	1.36	0.71	0.83	4.09	29503	3788	15	0	3	0	0	logfile
✔	8GXY	34365	2024-02-21	2022-09-21	2.8	2.43	2.80	2.7	0.005	0.52	0.0	0.04	14.57	0.00	1.951	5.20	0.03	2.1	97.9	0.0	0.94	0.63	0.82	4.11	2.7	0.004	0.60	0.0	0.04	17.68	0.00	2.022	6.68	2.89	1.8	98.2	0.0	1.24	0.68	0.72	0.87	3.50	29472	3788	14	0	2	0	0	logfile
✔	8GY2	34368	2024-02-14	2022-09-21	2.5	3.19	2.59	3.0	0.007	0.67	0.0	0.04	17.18	0.00	1.759	7.33	2.88	6.8	93.2	0.0	-0.26	0.80	0.89	4.02	3.0	0.003	0.62	0.0	0.04	16.95	0.00	2.174	5.88	1.89	5.6	94.4	0.0	-0.12	0.21	0.81	0.89	4.26	9943	1264	5	0	7	0	0	logfile
✔	8EKM	28207	2024-02-17	2022-09-21	3.56	3.84	3.63	3.8	0.002	0.59	0.0	0.04	17.68	0.00	2.199	8.94	0.37	9.6	90.4	0.0	-2.09	0.68	0.84	1.80	3.8	0.005	0.65	0.0	0.05	17.94	0.00	2.178	8.47	6.15	10.9	89.1	0.0	-2.05	0.26	0.70	0.86	2.07	19772	2590	14	0	14	0	0	logfile
✔	8GXX	34364	2024-02-21	2022-09-21	3.0	2.61	3.12	2.9	0.006	0.56	0.0	0.04	11.84	0.00	1.758	5.57	0.06	3.0	96.9	0.0	0.65	0.67	0.82	3.77	2.8	0.003	0.62	0.0	0.04	16.97	0.00	1.951	7.81	2.85	2.2	97.8	0.0	0.68	1.09	0.73	0.85	3.30	29553	3788	15	0	5	0	0	logfile
✔	8GXZ	34366	2024-02-21	2022-09-21	3.1	2.45	3.10	3.0	0.006	0.54	0.0	0.04	13.92	0.00	1.826	6.59	0.00	4.2	95.8	0.0	0.46	0.54	0.74	3.39	3.0	0.004	0.61	0.0	0.04	16.76	0.01	1.889	7.74	3.47	2.9	97.1	0.0	0.00	1.95	0.68	0.83	3.00	29499	3788	14	0	3	0	0	logfile
✔	8EKL	28206	2024-02-17	2022-09-21	3.06	3.28	3.26	3.3	0.003	0.47	0.0	0.04	18.45	0.00	2.117	5.10	0.18	3.4	96.6	0.0	-0.87	0.72	0.90	4.06	3.3	0.005	0.73	2.0	0.05	18.67	0.01	1.843	5.47	2.95	3.5	96.5	0.0	-0.68	0.16	0.71	0.90	4.08	19334	2485	14	0	14	0	0	logfile
✔	8EKK	28205	2024-02-21	2022-09-21	3.28	3.66	3.37	3.6	0.002	0.48	0.0	0.04	17.36	0.00	2.191	5.91	0.15	4.5	95.5	0.0	-1.12	0.79	0.88	3.00	3.6	0.002	0.49	0.0	0.04	17.84	0.00	2.230	5.94	2.66	4.7	95.3	0.0	-0.39	0.24	0.79	0.87	2.79	29624	3731	14	0	14	0	0	logfile
✔	8EKP	28209	2024-02-18	2022-09-21	2.75	2.30	2.90	2.8	0.004	0.87	0.0	0.04	14.70	0.01	2.269	3.50	0.00	1.3	98.7	0.0	-2.94	0.53	0.84	3.56	2.8	0.004	0.59	0.0	0.04	16.71	0.00	2.272	6.17	1.97	1.9	98.1	0.0	0.95	1.09	0.53	0.85	3.32	20448	2488	8	0	8	0	0	logfile
✔	8GY7	34371	2024-02-13	2022-09-21	3.3	2.37	3.34	2.2	0.004	0.76	2.0	0.05	15.85	0.01	2.006	10.67	0.96	4.7	95.3	0.0	0.27	0.76	0.77	2.61	2.2	0.004	0.68	0.0	0.04	16.93	0.00	2.159	13.16	4.20	4.8	95.2	0.0	0.77	0.44	0.77	0.79	2.55	7661	968	6	0	1	0	0	logfile
✔	8EKS	28212	2024-02-18	2022-09-21	3.1	3.47	3.18	3.5	0.003	0.62	0.0	0.04	13.55	0.00	2.215	3.64	0.00	1.9	98.1	0.0	-2.29	0.72	0.84	3.39	3.5	0.002	0.44	0.0	0.03	14.78	0.00	2.115	5.52	0.77	1.9	98.1	0.0	2.06	0.38	0.66	0.83	3.60	20484	2504	8	0	4	0	0	logfile
✔	8EKR	28211	2024-02-17	2022-09-21	3.0	2.81	3.16	3.0	0.004	0.80	0.0	0.04	14.01	0.01	2.292	5.46	0.38	3.6	96.4	0.0	-1.13	0.51	0.83	3.05	3.0	0.003	0.57	0.0	0.04	16.96	0.00	2.167	7.10	2.83	2.7	97.3	0.0	1.25	0.48	0.53	0.85	2.67	19712	2452	8	0	4	0	0	logfile

• ← previous
• Page 126 of 588
• next →