Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EKA	28196	2024-02-13	2022-09-20	3.7	4.02	3.72	3.9	0.003	0.68	0.0	0.04	17.36	0.00	2.209	7.61	0.26	12.3	87.4	0.3	-1.98	0.78	0.85	2.25	3.9	0.003	0.69	0.0	0.04	17.49	0.00	2.205	8.70	3.99	12.1	87.7	0.1	-1.98	0.98	0.78	0.85	2.55	7023	905	7	0	0	0	0	logfile
✔	8EKC	28197	2024-02-23	2022-09-20	2.7	3.48	2.73	3.0	0.008	0.76	0.0	0.04	22.19	0.02	1.894	3.55	0.00	4.1	95.9	0.0	-1.10	0.88	0.84	3.57	3.0	0.005	0.71	0.0	0.04	22.21	0.01	1.777	7.13	2.64	4.0	96.0	0.0	-0.07	0.44	0.91	0.92	2.96	144544	5558	88	4655	719	300	0	logfile
✔	8EKE	28200	2024-02-13	2022-09-20	3.36	3.79	3.34	3.7	0.002	0.45	0.0	0.04	10.50	0.00	2.313	5.20	2.71	2.5	97.2	0.3	-0.29	0.78	0.72	2.45	3.7	0.003	0.70	0.0	0.04	14.37	0.00	2.246	12.99	5.23	3.5	96.2	0.3	-0.60	1.09	0.79	0.73	2.14	4681	610	2	0	0	0	0	logfile
✔	8B4i	15849	2024-02-14	2022-09-20	3.32	3.85	3.38	3.7	0.004	0.62	0.0	0.04	16.41	0.00	2.205	3.85	0.24	1.5	98.5	0.0	0.59	0.62	0.85	3.66	3.6	0.005	0.68	0.0	0.04	14.25	0.00	2.227	8.01	2.07	2.1	97.9	0.0	1.26	1.02	0.60	0.83	2.95	8242	1026	14	0	9	0	0	logfile
✔	8B4H	15848	2024-02-21	2022-09-20	3.35	3.33	3.32	3.4	0.004	0.71	0.0	0.04	22.55	0.01	2.084	11.08	0.00	2.7	97.3	0.0	-0.27	0.64	0.65	2.33	3.4	0.004	0.60	0.0	0.04	22.43	0.00	1.832	10.44	1.16	5.5	94.5	0.0	-0.76	1.24	0.67	0.72	2.76	31138	1440	10	224	2	0	14570	logfile
✔	8B40	15835	2024-02-14	2022-09-19	4.6	4.13	4.51	3.6	0.002	0.50	0.0	0.04	10.45	0.00	2.149	11.85	4.31	4.2	95.7	0.0	-0.38	0.77	0.69	—	3.6	0.003	0.68	0.0	0.04	10.93	0.00	2.242	15.26	0.00	5.7	94.3	0.0	-0.72	1.01	0.77	0.66	—	39466	4844	7	0	0	0	0	logfile
✔	8B41	15836	2024-02-21	2022-09-19	3.8	3.07	3.30	3.7	0.002	0.48	0.0	0.04	11.83	0.00	2.169	9.52	4.69	3.6	96.4	0.0	-0.49	0.78	0.77	1.42	3.7	0.005	0.75	2.0	0.04	14.78	0.00	2.126	15.57	4.12	4.9	95.1	0.0	-0.40	1.49	0.79	0.78	1.28	31259	3805	10	0	0	0	0	logfile
✔	8EK1	28192	2024-02-15	2022-09-19	3.6	3.91	3.66	3.8	0.004	0.74	0.0	0.05	15.72	0.00	2.185	9.39	0.53	9.2	90.3	0.5	-1.95	0.80	0.83	2.83	3.8	0.003	0.66	0.0	0.04	16.45	0.00	2.160	7.78	2.95	9.0	90.9	0.1	-1.87	1.01	0.79	0.83	2.57	8497	1102	7	0	0	0	0	logfile
✔	8GWG	34312	2024-02-18	2022-09-17	3.37	3.96	3.48	7.9	0.009	0.94	5.0	0.06	18.83	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.59	0.16	-0.05	3.5	0.005	0.92	1.0	0.05	18.74	0.01	1.641	23.79	4.08	7.9	91.9	0.2	-2.18	1.77	0.76	0.62	0.32	21955	2668	13	52	9	1	0	logfile
✔	8EJL	28186	2024-02-18	2022-09-17	3.9	4.30	3.90	4.1	0.005	0.54	0.0	0.04	11.63	0.00	0.636	9.14	3.04	2.2	97.8	0.0	1.75	0.68	0.85	1.79	4.1	0.004	0.64	0.0	0.04	14.81	0.00	2.124	10.08	2.86	2.4	97.6	0.0	2.14	0.56	0.68	0.85	1.34	22155	3095	30	0	0	0	0	logfile
✔	8GWF	34311	2024-02-18	2022-09-17	3.39	3.99	3.49	3.6	0.009	0.94	5.0	0.06	18.83	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.84	0.76	1.55	3.6	0.005	0.88	3.0	0.04	18.14	0.01	1.982	15.56	3.07	8.3	91.6	0.2	-1.50	1.44	0.86	0.83	1.68	21955	2668	13	52	9	1	0	logfile
✔	8GWo	34318	2024-02-18	2022-09-17	3.8	4.21	3.91	4.0	0.008	0.82	0.0	0.05	16.54	0.01	1.755	15.73	0.66	8.8	91.1	0.1	-2.55	0.81	0.82	1.08	4.0	0.003	0.61	0.0	0.04	16.83	0.00	2.169	12.72	2.69	7.6	92.4	0.0	-1.62	0.46	0.82	0.83	0.90	21880	2655	12	53	9	0	0	logfile
✔	8GWi	34313	2024-02-18	2022-09-17	3.18	3.41	3.21	3.4	0.009	0.94	5.0	0.06	18.83	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.59	0.52	0.32	3.4	0.003	0.65	0.0	0.04	18.03	0.00	2.099	10.75	2.46	7.8	92.1	0.1	-1.34	1.67	0.73	0.74	1.79	21955	2668	13	52	9	1	0	logfile
✔	8GWN	34317	2024-02-18	2022-09-17	3.38	3.97	3.47	3.7	0.015	1.23	0.0	0.06	19.48	0.01	1.979	38.61	14.07	23.5	75.0	1.5	-6.16	0.86	0.83	1.87	3.7	0.004	0.78	0.0	0.04	18.25	0.00	2.085	16.29	3.00	9.8	90.1	0.1	-2.19	0.54	0.87	0.85	1.61	21860	2655	12	52	9	0	0	logfile
✔	8EJK	28185	2024-02-14	2022-09-17	3.4	3.54	3.44	3.5	0.004	0.61	1.0	0.05	14.17	0.00	2.152	9.07	0.11	3.1	96.9	0.0	0.74	0.72	0.83	2.20	3.5	0.002	0.58	0.0	0.04	15.85	0.00	2.181	9.48	2.13	3.0	97.0	0.0	0.78	0.36	0.73	0.86	1.79	8594	1124	5	0	1	0	0	logfile
✔	8EJF	28180	2024-02-14	2022-09-16	3.72	4.47	3.85	3.9	0.024	1.99	0.0	0.16	17.18	0.01	2.299	2.10	0.00	9.0	91.0	0.0	-1.87	0.85	0.78	2.04	3.9	0.004	0.90	0.0	0.05	14.15	0.00	2.154	17.65	1.45	13.1	86.4	0.5	-2.43	1.43	0.88	0.82	1.90	9801	1080	36	0	90	0	0	logfile
✔	8EJ5	28176	2024-02-13	2022-09-16	4.9	4.58	4.63	4.6	0.012	1.52	1.0	0.09	12.69	0.01	2.466	13.82	3.27	2.0	97.2	0.8	1.40	0.43	0.64	—	4.5	0.003	0.74	0.0	0.04	13.77	0.00	2.116	17.17	0.00	4.3	95.5	0.1	0.29	1.39	0.46	0.75	—	5818	727	4	0	0	0	0	logfile
✔	8EJG	28181	2024-02-14	2022-09-16	3.13	3.83	3.14	3.5	0.025	1.94	3.0	0.17	20.95	0.01	2.106	0.88	0.00	6.4	93.6	0.0	-1.09	0.86	0.81	3.20	3.5	0.004	0.94	0.0	0.05	14.22	0.00	2.254	10.91	2.07	8.3	91.3	0.4	-0.99	1.51	0.86	0.81	2.84	9966	1083	36	0	102	0	0	logfile
✔	8EJE	28179	2024-02-14	2022-09-16	3.69	3.95	3.70	3.9	0.023	2.14	0.0	0.16	15.07	0.01	2.317	2.39	0.00	6.0	94.0	0.0	-0.11	0.82	0.79	2.65	3.8	0.004	0.92	0.0	0.05	15.56	0.00	2.016	14.41	3.47	9.1	90.7	0.2	-0.52	1.04	0.81	0.78	1.98	9426	1068	33	0	66	0	0	logfile
✔	8B3A	15824	2024-02-13	2022-09-16	3.8	3.66	2.91	4.1	0.009	1.88	0.0	0.10	27.06	0.09	2.613	1.89	0.00	0.0	100.0	0.0	-4.71	0.55	0.64	5.18	4.1	0.079	6.11	24.0	0.43	24.10	0.05	1.656	300.95	53.33	52.7	4.0	43.3	-10.74	2.56	0.43	0.58	3.10	2010	210	30	0	60	0	0	logfile

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