Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EJ5	28176	2024-02-13	2022-09-16	4.9	4.58	4.63	4.6	0.012	1.52	1.0	0.09	12.69	0.01	2.466	13.82	3.27	2.0	97.2	0.8	1.40	0.43	0.64	—	4.5	0.003	0.74	0.0	0.04	13.77	0.00	2.116	17.17	0.00	4.3	95.5	0.1	0.29	1.39	0.46	0.75	—	5818	727	4	0	0	0	0	logfile
✔	8GWB	34308	2024-02-18	2022-09-16	2.75	2.95	2.85	25.0	0.009	1.07	1.0	0.05	17.30	0.01	1.556	16.84	2.25	7.5	92.3	0.2	-2.40	0.29	0.01	0.23	25.0	0.004	0.81	0.0	0.04	17.94	0.01	1.944	21.98	3.71	9.2	90.7	0.1	-1.83	1.62	0.36	0.18	0.12	21879	2655	16	54	10	7	0	logfile
✔	8B3F	15826	2024-02-21	2022-09-16	3.1	2.81	2.76	2.8	0.011	1.69	40.0	0.10	16.15	0.01	0.542	7.35	0.08	4.4	95.6	0.0	-1.26	0.68	0.70	2.51	2.8	0.004	0.66	0.0	0.05	17.25	0.00	1.876	9.65	0.95	3.6	96.4	0.0	-0.01	1.96	0.72	0.75	3.04	92036	5626	26	102	10	0	45119	logfile
✔	8GW1	34302	2024-02-18	2022-09-16	3.31	3.92	—	3.7	0.006	0.76	1.0	0.06	18.10	0.01	1.712	15.92	0.53	5.8	94.0	0.2	-1.96	0.79	0.72	1.66	3.7	0.012	0.78	0.0	0.04	18.30	0.01	2.060	13.74	4.54	5.8	94.1	0.1	-1.30	0.44	0.81	0.80	1.62	21843	2656	14	52	10	3	0	logfile
✔	8B3D	15825	2024-02-21	2022-09-16	2.6	2.67	2.52	2.7	0.010	1.66	40.0	0.10	16.23	0.01	1.418	6.55	0.08	4.5	95.5	0.0	-1.14	0.69	0.76	3.46	2.7	0.003	0.65	0.0	0.05	17.71	0.00	1.815	9.56	1.01	4.0	96.0	0.0	0.18	0.62	0.64	0.80	3.48	95796	5876	29	102	14	0	46942	logfile
✔	8B3A	15824	2024-02-13	2022-09-16	3.8	3.66	2.91	4.1	0.009	1.88	0.0	0.10	27.06	0.09	2.613	1.89	0.00	0.0	100.0	0.0	-4.71	0.55	0.64	5.18	4.1	0.079	6.11	24.0	0.43	24.10	0.05	1.656	300.95	53.33	52.7	4.0	43.3	-10.74	2.56	0.43	0.58	3.10	2010	210	30	0	60	0	0	logfile
✔	8GW6	34303	2024-02-14	2022-09-16	3.3	3.39	3.36	3.7	0.004	0.60	0.0	0.05	12.88	0.00	2.397	20.00	0.65	2.2	97.8	0.0	0.70	0.59	0.80	2.71	3.7	0.003	0.65	0.0	0.04	15.22	0.00	2.255	5.94	0.86	3.8	96.2	0.0	0.68	0.95	0.57	0.81	2.18	8883	1101	6	0	6	0	0	logfile
✔	8GW7	34304	2024-02-13	2022-09-16	3.3	3.48	3.35	3.8	0.004	0.79	0.0	0.06	14.00	0.01	2.220	5.74	0.39	1.3	98.7	0.0	1.51	0.61	0.78	1.67	3.7	0.003	0.68	0.0	0.04	15.63	0.00	2.172	7.75	3.40	2.4	97.6	0.0	2.14	1.02	0.62	0.80	1.87	7524	945	6	0	9	0	0	logfile
✔	8EJC	28177	2024-02-14	2022-09-16	3.0	3.01	3.04	3.1	0.006	0.64	0.0	0.04	13.37	0.00	2.199	9.48	0.00	3.6	96.4	0.0	1.20	0.69	0.84	3.08	3.2	0.004	0.61	0.0	0.04	15.89	0.00	2.174	9.30	2.55	3.6	96.4	0.0	1.15	0.34	0.69	0.85	2.34	8659	1132	5	0	1	0	0	logfile
✔	8EJH	28182	2024-02-16	2022-09-16	3.71	4.24	3.87	4.0	0.021	1.83	0.0	0.15	17.28	0.01	2.321	2.57	0.00	5.7	94.3	0.0	-0.18	0.78	0.78	2.12	4.0	0.006	0.88	0.0	0.05	14.36	0.00	2.153	12.39	2.79	7.6	92.4	0.0	-0.63	1.88	0.76	0.77	2.11	15186	1761	45	0	99	0	0	logfile
✔	8B3J	15830	2024-02-13	2022-09-16	3.1	3.34	3.18	3.3	0.005	0.63	0.0	0.05	15.71	0.00	2.144	7.52	0.00	7.6	92.4	0.0	-2.49	0.44	0.88	3.25	3.3	0.004	0.59	0.0	0.04	16.20	0.00	2.152	6.09	3.24	7.3	92.7	0.0	-2.39	0.24	0.44	0.88	2.74	5688	718	3	0	0	0	0	logfile
✔	8EJF	28180	2024-02-14	2022-09-16	3.72	4.47	3.85	3.9	0.024	1.99	0.0	0.16	17.18	0.01	2.299	2.10	0.00	9.0	91.0	0.0	-1.87	0.85	0.78	2.04	3.9	0.004	0.90	0.0	0.05	14.15	0.00	2.154	17.65	1.45	13.1	86.4	0.5	-2.43	1.43	0.88	0.82	1.90	9801	1080	36	0	90	0	0	logfile
✔	8GVW	34300	2024-02-18	2022-09-16	3.59	3.83	3.61	3.9	0.006	0.89	0.0	0.05	15.33	0.01	2.233	3.61	0.17	2.3	97.7	0.0	0.01	0.67	0.81	1.80	3.9	0.003	0.61	0.0	0.04	16.66	0.00	2.224	10.07	1.29	3.1	96.9	0.0	2.45	0.63	0.69	0.83	2.08	22496	2684	8	0	24	0	0	logfile
✔	8EJJ	28184	2024-02-16	2022-09-16	3.22	3.73	3.20	3.6	0.024	1.80	0.0	0.15	13.95	0.01	2.394	1.97	0.00	2.8	97.2	0.0	0.28	0.83	0.84	3.51	3.6	0.005	0.71	0.0	0.04	13.18	0.00	2.123	7.97	2.47	4.6	95.4	0.0	0.03	0.71	0.85	0.87	3.61	14862	1743	46	0	87	0	0	logfile
✔	8B3Q	15833	2024-02-19	2022-09-16	2.58	3.69	2.62	3.2	0.011	1.55	0.0	0.09	14.85	0.01	2.348	13.83	0.20	0.0	100.0	0.0	-1.09	0.83	0.94	3.67	3.3	0.003	0.55	0.0	0.03	17.44	0.00	2.219	4.82	2.59	0.2	99.8	0.0	6.35	2.57	0.77	0.88	-0.19	25095	3395	75	0	0	0	0	logfile
✔	8B3i	15829	2024-02-23	2022-09-16	3.5	3.84	3.57	3.7	0.005	0.64	0.0	0.04	13.76	0.00	1.270	6.02	0.00	7.5	92.5	0.0	-2.21	0.83	0.81	3.02	3.7	0.003	0.55	0.0	0.04	15.08	0.00	1.983	9.36	0.76	6.2	93.8	0.0	-1.56	0.38	0.82	0.80	2.74	40377	2537	8	0	3	0	20180	logfile
✔	8GVX	34301	2024-02-22	2022-09-16	3.91	4.24	—	3.7	0.008	1.01	4.0	0.06	16.27	0.01	2.173	11.61	0.68	2.1	97.9	0.0	-0.99	0.79	0.69	1.27	3.7	0.003	0.59	0.0	0.04	15.88	0.00	2.164	8.67	0.56	3.1	96.9	0.0	2.52	0.63	0.84	0.81	1.07	32872	3964	16	0	24	0	0	logfile
✔	8B3P	15832	2024-02-17	2022-09-16	2.81	3.73	2.92	3.3	0.008	1.53	30.0	0.10	16.99	0.00	2.469	4.32	0.78	0.0	100.0	0.0	-0.91	0.82	0.93	1.32	3.3	0.003	0.54	0.0	0.03	18.16	0.00	2.220	4.46	2.07	0.0	100.0	0.0	5.67	1.29	0.80	0.90	0.22	17620	2370	55	0	0	0	0	logfile
✔	8EJD	28178	2024-02-14	2022-09-16	3.8	4.33	3.84	4.1	0.022	1.83	0.0	0.17	17.20	0.02	2.400	2.31	0.00	4.7	95.3	0.0	-0.17	0.83	0.78	2.34	4.1	0.005	1.06	1.0	0.05	14.20	0.00	2.243	16.64	2.80	8.4	91.5	0.1	0.25	1.90	0.83	0.78	2.18	9804	1086	36	0	87	0	0	logfile
✔	8EJG	28181	2024-02-14	2022-09-16	3.13	3.83	3.14	3.5	0.025	1.94	3.0	0.17	20.95	0.01	2.106	0.88	0.00	6.4	93.6	0.0	-1.09	0.86	0.81	3.20	3.5	0.004	0.94	0.0	0.05	14.22	0.00	2.254	10.91	2.07	8.3	91.3	0.4	-0.99	1.51	0.86	0.81	2.84	9966	1083	36	0	102	0	0	logfile

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