Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EiK	28159	2024-02-15	2022-09-15	3.19	3.52	3.30	3.4	0.003	0.69	1.0	0.05	15.51	0.00	2.133	8.72	0.39	6.4	93.6	0.0	-1.62	0.66	0.68	1.48	3.4	0.002	0.57	0.0	0.04	15.97	0.00	2.153	8.95	2.32	5.2	94.8	0.0	-0.92	1.17	0.67	0.72	1.49	13487	1809	13	0	12	0	0	logfile
✔	8GVK	32099	2024-02-13	2022-09-15	2.2	2.06	2.20	2.2	0.006	1.29	0.0	0.06	15.35	0.00	2.057	5.53	4.07	3.4	94.0	2.6	-1.54	0.65	0.80	5.76	2.1	0.003	0.80	0.0	0.04	15.01	0.00	2.209	8.29	1.74	4.5	94.7	0.9	-0.85	0.81	0.74	0.85	6.54	3567	476	8	0	0	19	0	logfile
✔	8EiH	28156	2024-02-15	2022-09-15	3.04	3.30	3.11	3.2	0.004	0.62	0.0	0.04	14.90	0.00	2.234	5.51	0.27	4.8	95.2	0.0	-1.22	0.71	0.80	3.03	3.2	0.002	0.53	0.0	0.04	15.37	0.00	2.267	5.28	2.36	4.1	95.9	0.0	-0.67	0.26	0.73	0.83	2.56	11674	1564	11	0	12	0	0	logfile
✔	8EiZ	28167	2024-02-20	2022-09-15	3.13	3.35	3.19	3.3	0.007	0.77	0.0	0.05	18.06	0.01	1.963	8.74	0.00	4.2	95.8	0.0	-0.51	0.68	0.82	3.46	3.3	0.003	0.51	0.0	0.04	15.79	0.00	1.965	6.38	1.09	4.0	96.0	0.0	-0.33	1.58	0.70	0.84	3.53	26100	1575	20	0	20	10	12825	logfile
✔	8GVE	34291	2024-02-13	2022-09-15	3.17	3.38	3.19	3.4	0.003	0.62	0.0	0.04	14.33	0.01	2.113	5.93	0.00	5.7	94.3	0.0	0.31	0.64	0.80	1.68	3.4	0.003	0.56	0.0	0.04	16.02	0.00	2.229	6.17	1.71	5.5	94.5	0.0	0.93	0.27	0.64	0.82	1.13	8054	1020	2	0	0	0	0	logfile
✔	8GVF	34292	2024-02-13	2022-09-15	3.09	3.29	3.08	3.3	0.005	0.64	0.0	0.04	14.00	0.01	2.306	4.41	0.11	3.9	95.8	0.3	0.79	0.66	0.83	2.36	3.3	0.003	0.50	0.0	0.04	15.52	0.00	2.276	4.23	1.48	3.6	96.1	0.3	1.62	0.27	0.60	0.82	1.66	8072	1022	2	0	0	0	0	logfile
✔	8EiS	28163	2024-02-19	2022-09-15	2.62	2.94	2.68	2.9	0.007	0.70	0.0	0.05	14.60	0.01	2.085	10.61	0.00	3.9	96.1	0.0	0.79	0.70	0.83	4.03	2.9	0.003	0.57	0.0	0.04	13.89	0.00	2.043	9.73	0.59	2.6	97.4	0.0	1.54	0.42	0.66	0.81	4.20	24370	1460	10	0	25	0	12025	logfile
✔	8GVH	34293	2024-02-15	2022-09-15	3.32	3.55	3.33	3.6	0.003	0.66	0.0	0.12	15.16	0.00	2.235	6.44	0.07	5.6	94.3	0.1	-0.39	0.63	0.80	1.54	3.6	0.003	0.58	0.0	0.04	16.78	0.00	2.151	5.74	2.04	5.9	94.0	0.1	0.59	0.35	0.56	0.77	1.61	12602	1576	4	0	2	0	0	logfile
✔	8EiT	28164	2024-02-14	2022-09-15	2.8	2.89	2.85	3.0	0.004	0.68	0.0	0.05	13.35	0.01	2.230	3.89	0.11	1.8	98.2	0.0	1.13	0.72	0.82	2.63	2.9	0.002	0.58	0.0	0.04	15.69	0.00	2.190	7.01	1.77	1.8	98.2	0.0	1.78	0.41	0.73	0.85	2.48	8578	1123	5	0	1	0	0	logfile
✔	8EiR	28162	2024-02-13	2022-09-15	2.49	3.15	2.50	3.0	0.005	0.81	0.0	0.05	16.40	0.01	1.960	4.05	2.61	2.2	97.4	0.3	-1.27	0.86	0.84	4.26	3.0	0.003	0.59	0.0	0.04	16.35	0.01	2.339	3.32	1.87	2.1	97.9	0.0	-0.05	0.57	0.84	0.91	4.28	4870	632	4	0	0	0	0	logfile
✔	8Eii	28157	2024-02-14	2022-09-15	3.12	3.48	3.13	3.4	0.004	0.72	0.0	0.04	15.07	0.01	2.205	9.34	0.10	5.8	94.2	0.0	-2.07	0.70	0.75	2.75	3.4	0.003	0.57	0.0	0.04	15.89	0.00	2.236	8.06	2.76	6.2	93.8	0.0	-1.50	1.13	0.69	0.76	2.75	10451	1366	9	0	9	0	0	logfile
✔	8EiJ	28158	2024-02-13	2022-09-15	3.34	3.70	3.35	3.7	0.003	0.73	1.0	0.04	15.17	0.00	2.172	9.51	0.38	5.6	94.4	0.0	-1.92	0.64	0.68	1.97	3.6	0.002	0.56	0.0	0.04	16.25	0.00	2.209	8.72	2.43	5.9	94.1	0.0	-1.41	0.31	0.64	0.69	1.77	7813	1017	7	0	6	0	0	logfile
✔	8EHS	28151	2024-02-13	2022-09-14	3.3	2.87	3.21	3.3	0.002	0.47	0.0	0.04	14.12	0.00	2.082	3.04	0.00	1.3	98.7	0.0	1.50	0.54	0.80	3.22	3.3	0.003	0.55	0.0	0.05	15.71	0.00	2.253	5.21	4.05	1.8	98.2	0.0	0.25	0.49	0.54	0.83	2.81	7546	1015	7	0	0	0	0	logfile
✔	8EHF	28146	2024-02-19	2022-09-14	3.3	3.37	3.23	3.4	0.009	0.77	6.0	0.05	15.97	0.00	2.037	7.16	3.82	6.4	93.6	0.0	-1.52	0.71	0.84	2.42	3.4	0.003	0.57	0.0	0.04	17.21	0.00	1.997	9.53	3.56	5.2	94.8	0.0	-0.54	0.30	0.72	0.86	1.86	26110	3170	10	63	4	0	0	logfile
✔	8GV9	34288	2024-02-15	2022-09-14	3.06	3.27	3.06	3.3	0.004	0.69	0.0	0.05	16.24	0.01	2.028	6.06	0.23	5.0	94.8	0.2	-0.09	0.65	0.82	1.61	3.3	0.004	0.57	0.0	0.04	17.21	0.00	2.052	5.17	3.31	5.2	94.6	0.2	0.38	0.25	0.63	0.81	1.54	12170	1532	4	0	2	0	0	logfile
✔	8EHA	28145	2024-02-20	2022-09-14	3.7	3.76	3.69	3.7	0.005	0.62	0.0	0.04	15.48	0.00	1.996	7.24	3.77	6.4	93.6	0.0	-1.50	0.73	0.84	2.02	3.7	0.003	0.60	0.0	0.04	16.89	0.00	1.923	11.55	4.29	6.1	93.9	0.0	-0.81	0.32	0.74	0.85	1.61	26250	3190	11	64	4	0	0	logfile
✔	8GVA	34289	2024-02-13	2022-09-14	3.25	3.43	3.24	3.4	0.004	0.68	0.0	0.04	14.13	0.00	2.259	5.49	0.00	5.6	94.4	0.0	-0.61	0.64	0.81	2.22	3.4	0.003	0.62	0.0	0.04	16.27	0.00	2.199	6.34	1.71	4.8	95.2	0.0	0.99	0.38	0.62	0.82	1.44	8072	1022	2	0	0	0	0	logfile
✔	8GV8	34287	2024-02-14	2022-09-14	3.08	3.29	3.09	3.3	0.019	1.93	51.0	0.09	14.99	0.01	1.614	6.04	3.97	5.6	93.7	0.7	-0.32	0.63	0.82	2.59	3.3	0.003	0.62	0.0	0.04	15.33	0.01	2.286	3.47	2.04	2.6	97.4	0.0	0.86	2.28	0.61	0.83	2.45	8161	1027	4	0	2	0	0	logfile
✔	8EHQ	28149	2024-02-19	2022-09-14	3.0	3.86	3.02	3.5	0.004	0.58	0.0	0.04	21.01	0.01	1.990	5.42	6.46	4.6	95.4	0.1	-1.44	0.88	0.86	1.90	3.5	0.004	0.58	0.0	0.04	20.21	0.00	1.975	5.93	2.78	4.6	95.4	0.0	-0.50	0.48	0.89	0.90	2.03	25828	3051	10	105	3	0	0	logfile
✔	8EHT	28152	2024-02-14	2022-09-14	3.4	3.23	3.26	3.4	0.006	0.64	0.0	0.05	12.61	0.00	2.007	2.58	0.21	3.5	96.5	0.0	-1.03	0.57	0.85	4.27	3.3	0.007	0.63	0.0	0.05	14.70	0.00	2.193	3.75	2.45	1.9	98.1	0.0	-0.17	0.49	0.55	0.87	3.66	8554	1204	7	0	0	0	0	logfile

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