Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GVC	34290	2024-02-13	2022-09-14	2.89	3.10	2.90	3.2	0.002	0.48	0.0	0.04	14.66	0.00	1.670	13.40	1.14	2.0	97.8	0.2	2.06	0.64	0.82	2.43	3.2	0.004	0.57	0.0	0.04	15.97	0.00	2.299	4.89	1.25	3.1	96.7	0.2	1.66	0.29	0.62	0.83	2.37	8080	1022	4	0	2	0	0	logfile
✔	8EHF	28146	2024-02-19	2022-09-14	3.3	3.37	3.23	3.4	0.009	0.77	6.0	0.05	15.97	0.00	2.037	7.16	3.82	6.4	93.6	0.0	-1.52	0.71	0.84	2.42	3.4	0.003	0.57	0.0	0.04	17.21	0.00	1.997	9.53	3.56	5.2	94.8	0.0	-0.54	0.30	0.72	0.86	1.86	26110	3170	10	63	4	0	0	logfile
✔	8EHS	28151	2024-02-13	2022-09-14	3.3	2.87	3.21	3.3	0.002	0.47	0.0	0.04	14.12	0.00	2.082	3.04	0.00	1.3	98.7	0.0	1.50	0.54	0.80	3.22	3.3	0.003	0.55	0.0	0.05	15.71	0.00	2.253	5.21	4.05	1.8	98.2	0.0	0.25	0.49	0.54	0.83	2.81	7546	1015	7	0	0	0	0	logfile
✔	8GUY	34281	2024-02-16	2022-09-14	4.18	4.57	4.26	4.3	0.005	1.00	0.0	0.06	14.55	0.01	2.249	6.07	0.12	10.0	90.0	0.0	-4.23	0.83	0.80	—	4.3	0.003	0.68	0.0	0.04	13.76	0.00	2.051	11.55	0.25	8.1	91.9	0.0	-2.42	1.64	0.83	0.79	—	14222	1762	6	0	0	0	0	logfile
✔	8EHQ	28149	2024-02-19	2022-09-14	3.0	3.86	3.02	3.5	0.004	0.58	0.0	0.04	21.01	0.01	1.990	5.42	6.46	4.6	95.4	0.1	-1.44	0.88	0.86	1.90	3.5	0.004	0.58	0.0	0.04	20.21	0.00	1.975	5.93	2.78	4.6	95.4	0.0	-0.50	0.48	0.89	0.90	2.03	25828	3051	10	105	3	0	0	logfile
✔	8EHA	28145	2024-02-20	2022-09-14	3.7	3.76	3.69	3.7	0.005	0.62	0.0	0.04	15.48	0.00	1.996	7.24	3.77	6.4	93.6	0.0	-1.50	0.73	0.84	2.02	3.7	0.003	0.60	0.0	0.04	16.89	0.00	1.923	11.55	4.29	6.1	93.9	0.0	-0.81	0.32	0.74	0.85	1.61	26250	3190	11	64	4	0	0	logfile
✔	8EH9	28144	2024-02-20	2022-09-13	3.9	4.00	3.90	3.9	0.004	0.75	0.0	0.05	16.72	0.01	2.026	8.83	0.04	6.0	94.0	0.0	-1.89	0.72	0.82	1.27	3.9	0.003	0.64	0.0	0.04	18.15	0.00	1.868	11.71	2.92	5.7	94.3	0.0	-1.08	0.41	0.72	0.83	1.15	26234	3190	11	64	4	0	0	logfile
✔	8EH5	28135	2024-02-13	2022-09-13	3.36	3.60	3.32	3.6	0.023	1.81	1.0	0.09	10.68	0.01	2.236	2.69	0.50	3.9	95.5	0.6	0.43	0.69	0.76	3.22	3.6	0.003	0.65	0.0	0.04	15.50	0.00	2.197	13.73	3.68	6.7	93.2	0.1	0.25	0.92	0.67	0.76	2.54	5503	704	7	0	0	0	0	logfile
✔	8GUR	34277	2024-02-14	2022-09-13	2.84	2.28	2.92	2.0	0.002	0.50	0.0	0.04	13.74	0.00	2.131	7.78	0.00	2.1	97.9	0.0	0.31	0.75	0.75	2.85	2.0	0.003	0.57	0.0	0.04	16.37	0.00	2.209	9.87	2.16	2.9	97.1	0.0	0.58	1.51	0.77	0.79	2.12	8888	1139	6	0	1	0	0	logfile
✔	8EH8	28143	2024-02-20	2022-09-13	3.4	3.50	3.39	3.5	0.004	0.59	0.0	0.04	15.43	0.00	1.203	7.62	3.77	5.8	94.2	0.0	-1.56	0.72	0.84	2.67	3.5	0.002	0.56	0.0	0.04	16.99	0.00	1.965	9.73	3.40	5.8	94.2	0.0	-0.52	0.34	0.73	0.87	2.07	26246	3190	11	64	4	0	0	logfile
✔	8EGS	28129	2024-02-21	2022-09-13	3.92	4.06	3.83	4.0	0.003	0.57	0.0	0.04	14.97	0.00	0.357	27.78	0.35	3.7	96.3	0.0	-0.21	0.78	0.80	1.68	4.1	0.003	0.69	0.0	0.04	16.25	0.00	2.135	13.21	3.71	5.3	94.7	0.0	-1.06	1.51	0.75	0.84	1.47	30696	3756	18	0	0	0	0	logfile
✔	8GUK	34275	2024-02-15	2022-09-12	2.51	3.12	2.54	2.9	0.004	0.60	0.0	0.04	29.88	0.00	2.202	10.18	3.15	1.7	98.3	0.0	2.28	0.85	0.85	3.27	3.0	0.004	0.61	0.0	0.04	29.74	0.00	2.216	9.44	4.73	2.1	97.9	0.0	2.52	0.21	0.83	0.86	2.96	12098	765	10	294	0	0	0	logfile
✔	8GUi	34274	2024-02-15	2022-09-12	2.81	3.24	2.87	3.1	0.004	0.58	0.0	0.04	27.52	0.00	2.109	9.47	0.13	2.6	97.4	0.0	1.95	0.86	0.86	3.13	3.1	0.005	0.63	0.0	0.04	28.35	0.00	2.191	11.49	2.87	3.3	96.7	0.0	2.26	0.33	0.87	0.88	2.98	13348	920	14	294	4	0	0	logfile
✔	8EGB	28113	2024-02-20	2022-09-12	3.8	3.42	3.83	3.8	0.006	0.62	2.0	0.04	14.58	0.01	2.001	7.16	0.11	4.7	95.3	0.0	-0.39	0.68	0.81	1.73	3.8	0.003	0.58	0.0	0.04	16.69	0.00	2.001	10.08	1.92	5.6	94.4	0.0	-0.32	1.35	0.68	0.81	1.20	26419	3197	10	69	5	0	0	logfile
✔	8B1U	15805	2024-02-19	2022-09-12	3.8	3.92	3.70	3.8	0.002	0.51	0.0	0.04	12.36	0.00	2.172	5.81	1.51	1.1	98.9	0.0	-0.66	0.77	0.78	1.88	3.8	0.004	0.64	0.0	0.04	16.41	0.00	2.118	10.51	1.96	2.6	97.4	0.0	0.95	1.37	0.79	0.82	2.14	24127	2886	6	51	2	0	0	logfile
✔	8EG8	28110	2024-02-20	2022-09-12	3.3	3.16	3.27	3.2	0.005	0.60	0.0	0.04	15.48	0.00	1.992	5.42	0.00	5.5	94.5	0.0	-0.29	0.71	0.82	2.30	3.2	0.006	0.65	0.0	0.04	16.88	0.00	1.998	8.94	1.80	6.5	93.5	0.0	-0.33	0.33	0.70	0.84	2.13	26553	3219	10	67	5	0	0	logfile
✔	8B1R	15803	2024-02-18	2022-09-12	3.2	3.47	3.13	3.3	0.004	0.63	0.0	0.05	9.18	0.00	2.210	7.58	0.34	0.7	99.3	0.0	0.06	0.84	0.87	2.66	3.3	0.006	0.60	0.0	0.04	13.28	0.00	2.209	4.75	0.90	1.9	98.1	0.0	2.00	0.65	0.87	0.91	2.98	21953	2746	6	0	1	0	0	logfile
✔	8B1T	15804	2024-02-19	2022-09-12	3.4	3.56	3.57	3.4	0.003	0.54	0.0	0.04	13.04	0.00	2.065	6.12	1.44	1.1	98.9	0.0	-0.96	0.81	0.83	2.60	3.4	0.004	0.69	1.0	0.04	16.31	0.00	1.999	8.33	1.89	1.5	98.5	0.0	1.01	1.29	0.83	0.86	2.32	23986	2869	6	51	2	0	0	logfile
✔	8EG7	28109	2024-02-19	2022-09-11	3.2	3.33	3.29	3.3	0.006	0.60	0.0	0.04	14.54	0.00	2.006	8.67	2.52	5.7	94.3	0.0	-0.92	0.71	0.83	2.52	3.3	0.005	0.59	0.0	0.04	16.40	0.00	1.961	9.27	3.26	5.7	94.3	0.0	-0.58	1.34	0.70	0.85	1.75	26200	3174	10	65	5	0	0	logfile
✔	8GUA	34271	2024-02-13	2022-09-11	2.77	2.80	2.65	2.9	0.007	0.69	0.0	0.04	15.04	0.01	2.224	10.99	0.13	3.8	95.9	0.2	-0.79	0.53	0.61	2.00	2.9	0.005	1.09	1.0	0.05	17.16	0.01	2.094	14.99	2.17	4.1	95.8	0.1	-0.38	1.15	0.56	0.65	1.96	7017	855	1	0	1	0	0	logfile

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