Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GUD	34273	2024-02-13	2022-09-11	2.62	2.98	2.83	3.1	0.008	0.79	0.0	0.05	14.85	0.01	2.116	20.31	0.00	6.0	94.0	0.0	-2.12	0.52	0.56	1.45	3.1	0.005	0.75	0.0	0.05	17.31	0.00	2.114	20.39	3.43	7.5	92.5	0.0	-1.77	0.35	0.49	0.57	1.52	6814	835	1	0	1	0	0	logfile
✔	8GUA	34271	2024-02-13	2022-09-11	2.77	2.80	2.65	2.9	0.007	0.69	0.0	0.04	15.04	0.01	2.224	10.99	0.13	3.8	95.9	0.2	-0.79	0.53	0.61	2.00	2.9	0.005	1.09	1.0	0.05	17.16	0.01	2.094	14.99	2.17	4.1	95.8	0.1	-0.38	1.15	0.56	0.65	1.96	7017	855	1	0	1	0	0	logfile
✔	8EG0	28108	2024-02-13	2022-09-10	3.53	4.58	3.65	4.0	0.002	0.49	0.0	0.04	17.47	0.00	2.269	7.87	0.00	0.5	99.5	0.0	1.82	0.89	0.83	1.71	4.1	0.005	0.58	0.0	0.04	18.26	0.00	2.169	12.83	1.01	1.9	98.1	0.0	1.39	0.57	0.91	0.86	2.18	6031	584	4	65	0	0	0	logfile
✔	8GU6	34270	2024-02-16	2022-09-10	3.1	3.33	3.14	3.4	0.002	0.53	0.0	0.04	18.66	0.00	2.091	13.08	0.14	5.6	94.4	0.0	-0.34	0.70	0.79	2.37	3.3	0.003	0.54	0.0	0.04	18.64	0.00	2.138	12.43	4.19	5.8	94.2	0.0	-0.16	0.26	0.70	0.79	2.24	15261	1870	5	50	4	0	0	logfile
✔	8EFY	28107	2024-02-21	2022-09-10	3.16	3.37	3.22	3.3	0.004	0.63	0.0	0.04	18.23	0.00	1.944	7.38	0.00	4.2	95.8	0.0	0.91	0.75	0.83	2.06	3.3	0.002	0.57	0.0	0.04	18.70	0.01	2.008	7.77	1.27	4.0	96.0	0.0	1.09	0.33	0.74	0.83	1.84	31274	3707	28	94	20	0	0	logfile
✔	8EFV	28101	2024-02-16	2022-09-09	2.97	3.23	3.08	3.2	0.003	0.58	0.0	0.04	17.04	0.00	2.016	7.13	0.00	4.2	95.8	0.0	0.76	0.70	0.83	1.98	3.2	0.003	0.58	0.0	0.04	18.70	0.00	2.021	8.05	1.29	3.8	96.2	0.0	0.95	0.28	0.67	0.84	1.66	15295	1821	14	42	10	0	0	logfile
✔	8GTP	34261	2024-02-21	2022-09-08	3.1	3.47	3.25	3.4	0.009	1.09	1.0	0.08	13.84	0.01	1.912	19.57	4.36	7.8	89.5	2.7	-3.18	0.69	0.71	1.46	3.4	0.003	0.68	0.0	0.05	14.74	0.00	2.116	8.41	2.56	6.7	93.2	0.1	-0.65	1.42	0.71	0.81	2.22	30249	3768	30	0	69	0	0	logfile
✔	8EFo	28086	2024-02-15	2022-09-08	2.8	2.69	2.95	3.0	0.004	0.85	0.0	0.06	9.17	0.01	2.241	5.81	0.00	1.5	98.5	0.0	-0.93	0.59	0.76	3.19	2.9	0.003	0.61	0.0	0.04	14.53	0.00	2.139	11.24	3.25	2.0	98.0	0.0	1.28	2.23	0.61	0.83	3.04	11708	1441	9	0	12	0	0	logfile
✔	8EFP	28087	2024-02-13	2022-09-08	3.8	4.73	3.90	4.0	0.006	1.46	7.0	0.09	18.61	0.01	1.908	33.65	3.07	13.3	86.7	0.0	-4.26	0.82	0.62	-0.42	4.0	0.004	0.89	0.0	0.04	18.96	0.00	2.081	25.08	4.02	11.8	88.2	0.0	-2.48	0.89	0.84	0.73	-0.30	4705	594	2	0	0	0	0	logfile
✔	8EF5	28066	2024-02-15	2022-09-08	3.3	2.72	3.17	3.3	0.004	0.88	0.0	0.07	8.23	0.01	2.284	4.02	0.00	1.3	98.7	0.0	0.02	0.73	0.76	2.15	3.4	0.003	0.67	0.0	0.04	14.31	0.00	2.129	11.22	3.49	1.5	98.5	0.0	1.30	0.80	0.76	0.81	1.92	11705	1441	9	0	12	0	0	logfile
✔	8EF6	28069	2024-02-15	2022-09-08	3.2	2.91	3.02	3.1	0.005	0.87	0.0	0.07	8.21	0.01	2.267	4.03	0.00	1.3	98.7	0.0	0.00	0.59	0.75	2.50	3.1	0.003	0.56	0.0	0.04	12.78	0.00	2.112	8.48	2.23	1.5	98.5	0.0	1.85	1.29	0.60	0.82	2.90	11686	1439	9	0	12	0	0	logfile
✔	8EFH	28082	2024-02-19	2022-09-08	3.3	3.57	3.34	3.5	0.002	0.54	0.0	0.04	15.52	0.00	2.060	6.97	0.04	3.6	96.4	0.0	1.18	0.60	0.85	2.15	3.5	0.003	0.58	0.0	0.04	16.39	0.00	1.992	7.21	1.44	3.8	96.2	0.0	0.61	0.38	0.61	0.87	1.61	23228	2921	14	0	12	0	0	logfile
✔	8EFi	28083	2024-02-19	2022-09-08	3.4	3.88	3.42	3.5	0.003	0.57	0.0	0.04	14.29	0.00	2.065	7.54	0.04	3.0	97.0	0.0	1.40	0.62	0.87	2.08	3.6	0.002	0.54	0.0	0.04	15.48	0.00	2.043	8.06	0.96	2.8	97.2	0.0	1.65	0.36	0.63	0.89	1.76	23256	2929	13	0	10	0	0	logfile
✔	8EFD	28080	2024-02-13	2022-09-08	3.8	4.67	3.83	3.9	0.002	0.49	0.0	0.04	14.10	0.00	2.048	8.46	0.13	3.8	96.2	0.0	0.81	0.88	0.79	0.38	3.9	0.002	0.62	0.0	0.04	15.94	0.00	2.188	11.56	1.43	4.0	96.0	0.0	0.61	0.57	0.88	0.79	0.54	7107	886	2	0	0	0	0	logfile
✔	8GTB	34248	2024-02-17	2022-09-08	3.43	3.83	2.04	5.0	0.007	0.71	0.0	0.04	12.85	0.00	2.213	7.43	0.00	3.1	96.9	0.0	-3.27	0.48	0.25	0.01	3.9	0.004	0.69	0.0	0.04	16.15	0.00	2.121	8.21	2.75	3.0	97.0	0.0	-1.01	2.87	0.75	0.87	1.72	17136	2340	18	0	0	0	0	logfile
✔	8GTo	34259	2024-02-21	2022-09-08	3.2	3.54	3.32	3.5	0.009	1.08	1.0	0.08	14.25	0.01	1.865	20.24	4.19	8.7	88.9	2.4	-3.26	0.70	0.69	1.52	3.4	0.005	0.72	0.0	0.05	15.22	0.00	2.078	8.97	2.13	7.0	92.8	0.2	-1.10	1.37	0.73	0.79	2.12	30234	3759	30	0	69	0	0	logfile
✔	8GTQ	34263	2024-02-21	2022-09-08	3.1	3.59	3.36	3.5	0.009	1.05	5.0	0.08	13.56	0.01	1.900	14.36	3.06	7.3	90.8	1.9	-3.05	0.70	0.69	1.82	3.5	0.005	0.79	0.0	0.05	14.89	0.00	1.966	9.28	2.48	6.6	93.3	0.1	-0.86	0.86	0.69	0.75	2.29	30519	3759	33	0	75	0	0	logfile
✔	8GTD	34250	2024-02-21	2022-09-08	4.7	4.27	4.25	4.2	0.014	2.16	0.0	0.00	5.49	0.01	2.285	3.73	0.00	8.4	90.0	1.6	0.41	0.50	0.44	—	4.2	0.004	0.93	0.0	0.00	6.20	0.00	2.228	4.76	0.00	19.1	80.2	0.7	-2.63	1.26	0.52	0.51	—	29580	7392	24	0	0	0	0	logfile
✔	8EFQ	28088	2024-02-13	2022-09-08	3.3	3.58	3.24	3.6	0.004	0.81	0.0	0.05	8.64	0.01	2.298	3.12	0.00	1.4	98.6	0.0	-1.52	0.60	0.72	1.55	3.6	0.003	0.59	0.0	0.04	14.37	0.00	2.131	10.08	3.36	1.9	98.1	0.0	0.64	2.72	0.63	0.78	1.52	7046	892	6	0	2	0	0	logfile
✔	8GTN	34258	2024-02-25	2022-09-08	3.17	3.63	3.40	3.5	0.003	0.54	0.0	0.04	11.93	0.00	2.208	15.34	1.50	0.9	99.1	0.0	-1.98	0.72	0.73	1.09	3.5	0.003	0.59	0.0	0.04	14.89	0.00	2.124	12.07	1.70	2.0	98.0	0.0	-0.94	1.36	0.73	0.75	0.98	48303	5859	27	0	0	0	0	logfile

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