Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8B0Y	15798	2024-02-15	2022-09-08	2.79	2.95	2.78	2.9	0.003	0.48	0.0	0.04	15.80	0.00	0.376	13.70	2.29	0.4	99.6	0.0	0.80	0.77	0.87	4.09	2.9	0.003	0.53	0.0	0.04	16.69	0.00	2.035	8.81	2.34	0.8	99.2	0.0	0.68	0.37	0.74	0.86	4.17	117180	16020	360	0	0	1860	0	logfile
✔	8EF5	28066	2024-02-15	2022-09-08	3.3	2.72	3.17	3.3	0.004	0.88	0.0	0.07	8.23	0.01	2.284	4.02	0.00	1.3	98.7	0.0	0.02	0.73	0.76	2.15	3.4	0.003	0.67	0.0	0.04	14.31	0.00	2.129	11.22	3.49	1.5	98.5	0.0	1.30	0.80	0.76	0.81	1.92	11705	1441	9	0	12	0	0	logfile
✔	8EFP	28087	2024-02-13	2022-09-08	3.8	4.73	3.90	4.0	0.006	1.46	7.0	0.09	18.61	0.01	1.908	33.65	3.07	13.3	86.7	0.0	-4.26	0.82	0.62	-0.42	4.0	0.004	0.89	0.0	0.04	18.96	0.00	2.081	25.08	4.02	11.8	88.2	0.0	-2.48	0.89	0.84	0.73	-0.30	4705	594	2	0	0	0	0	logfile
✔	8EEP	28054	2024-02-13	2022-09-07	2.2	2.31	2.33	2.3	0.004	1.00	0.0	0.71	22.11	0.00	0.286	7.98	1.59	0.0	100.0	0.0	1.98	0.74	0.81	4.21	2.3	0.033	1.72	0.0	0.12	19.42	0.01	1.841	9.30	1.61	0.4	99.6	0.0	1.86	1.38	0.74	0.81	3.63	108060	13260	60	0	120	0	0	logfile
✔	8B0K	15786	2024-02-13	2022-09-07	3.0	3.23	3.08	3.2	0.002	0.52	0.0	0.04	9.63	0.00	2.276	7.40	0.50	3.1	96.9	0.0	0.56	0.57	0.83	5.07	3.2	0.003	0.58	0.0	0.04	13.42	0.00	2.242	7.92	2.51	3.5	96.5	0.0	0.92	0.88	0.59	0.85	4.48	3830	492	1	0	0	0	0	logfile
✔	8B0L	15787	2024-02-13	2022-09-07	3.13	3.53	3.20	3.4	0.003	0.67	0.0	0.04	10.82	0.00	2.270	7.86	0.48	4.5	95.5	0.0	1.39	0.56	0.84	4.51	3.4	0.003	0.56	0.0	0.04	13.59	0.00	2.233	8.11	1.20	3.7	96.3	0.0	1.08	0.93	0.55	0.85	3.84	4033	510	1	0	1	0	0	logfile
✔	8B0J	15785	2024-02-20	2022-09-07	3.99	4.45	4.02	4.1	0.009	1.30	0.0	0.08	22.58	0.01	1.945	11.42	0.00	9.7	90.3	0.0	-2.43	0.73	0.68	1.71	4.1	0.003	0.61	0.0	0.04	22.20	0.00	1.939	14.71	3.19	5.5	94.5	0.0	-0.09	1.40	0.75	0.74	1.59	28636	1931	7	160	0	0	12434	logfile
✔	8B0A	15777	2024-02-16	2022-09-07	3.0	4.03	3.06	3.3	0.008	0.96	0.0	0.07	23.86	0.01	2.331	0.99	0.58	2.7	96.9	0.4	-0.03	0.91	0.88	3.22	3.2	0.003	0.64	0.0	0.03	25.48	0.00	2.095	8.61	1.64	2.0	97.8	0.2	2.42	2.04	0.91	0.89	1.52	15843	1222	11	298	0	0	0	logfile
✔	8GT6	34245	2024-02-13	2022-09-07	3.47	3.69	3.52	3.6	0.010	1.53	0.0	0.06	17.48	0.01	2.322	9.92	0.77	5.1	94.9	0.0	-4.60	0.63	0.82	2.34	3.6	0.003	0.82	0.0	0.04	17.76	0.00	2.294	9.92	2.70	3.7	96.3	0.0	0.05	0.67	0.63	0.82	1.94	4922	618	3	0	1	0	0	logfile
✔	8B0P	15791	2024-02-13	2022-09-07	2.86	3.13	2.92	3.1	0.005	0.71	2.0	0.34	10.46	0.01	2.235	5.12	0.97	3.2	96.6	0.2	-0.43	0.58	0.84	4.71	3.1	0.003	0.53	0.0	0.04	13.08	0.00	2.253	7.25	0.73	3.2	96.8	0.0	0.62	0.88	0.56	0.84	4.10	4016	510	2	0	1	0	0	logfile
✔	8EEX	28064	2024-02-17	2022-09-07	2.95	2.88	2.94	3.0	0.006	0.89	0.0	0.05	17.00	0.01	2.173	0.66	0.51	1.8	98.2	0.0	-0.43	0.69	0.83	3.81	3.0	0.003	0.62	0.0	0.04	18.62	0.00	2.146	5.84	2.06	3.1	96.9	0.0	0.61	1.50	0.73	0.88	3.20	17082	2008	4	36	4	0	0	logfile
✔	8B0M	15788	2024-02-13	2022-09-07	3.01	3.39	3.03	3.3	0.003	0.66	0.0	0.04	11.18	0.00	2.258	5.92	0.48	5.7	94.3	0.0	-0.18	0.57	0.84	5.07	3.3	0.002	0.53	0.0	0.04	13.40	0.00	2.219	6.05	2.16	5.5	94.5	0.0	0.78	1.69	0.57	0.85	3.77	4015	508	1	0	1	0	0	logfile
✔	8EEV	28060	2024-02-18	2022-09-07	3.6	2.41	3.45	2.0	0.009	0.95	0.0	0.05	9.16	0.01	1.996	4.75	0.00	11.6	88.1	0.3	-4.66	0.70	0.73	3.35	2.1	0.004	0.79	0.0	0.05	14.45	0.00	2.125	12.46	4.78	8.4	91.5	0.1	-1.99	0.61	0.71	0.75	3.00	20640	2713	12	0	0	0	0	logfile
✔	8B0H	15781	2024-02-18	2022-09-07	3.3	3.48	3.37	3.4	0.004	0.87	2.0	0.05	15.38	0.01	1.853	8.69	0.56	5.1	94.9	0.0	-0.65	0.67	0.79	2.70	3.4	0.003	0.61	0.0	0.04	15.54	0.00	1.903	8.64	1.60	4.1	95.9	0.0	0.02	0.54	0.69	0.83	2.45	72850	4703	9	0	0	0	35735	logfile
✔	8EET	28057	2024-02-13	2022-09-07	3.1	3.36	3.21	3.4	0.007	0.92	0.0	0.06	12.42	0.00	0.312	9.93	1.07	0.5	99.5	0.0	1.87	0.72	0.82	3.55	3.4	0.036	2.63	0.0	0.28	22.74	0.00	0.540	13.15	1.66	1.3	98.7	0.0	2.02	1.33	0.68	0.83	3.02	107640	13260	60	0	120	0	0	logfile
✔	8B0N	15789	2024-02-13	2022-09-07	2.67	2.99	2.76	3.0	0.004	0.66	0.0	0.04	10.56	0.00	2.267	5.50	0.00	3.4	96.6	0.0	0.75	0.57	0.86	5.58	3.0	0.003	0.53	0.0	0.04	13.33	0.00	2.227	5.87	1.23	2.8	97.2	0.0	0.90	0.28	0.56	0.87	4.28	4004	510	1	0	1	0	0	logfile
✔	8B0F	15779	2024-02-14	2022-09-07	3.0	3.33	3.08	3.1	0.004	0.75	0.0	0.05	14.81	0.01	2.067	4.43	1.40	7.8	92.2	0.0	-1.39	0.81	0.81	3.23	3.1	0.006	0.66	0.0	0.04	14.93	0.00	1.942	6.27	0.85	5.0	95.0	0.0	-0.14	1.36	0.81	0.81	3.05	60654	3910	12	0	9	0	29718	logfile
✔	8B0i	15784	2024-02-17	2022-09-07	4.28	5.23	4.35	4.5	0.012	1.98	1.0	0.11	24.77	0.01	1.911	8.92	0.14	5.1	94.9	0.0	-1.62	0.77	0.61	—	4.5	0.002	0.60	0.0	0.04	22.78	0.00	1.983	13.77	0.00	5.0	95.0	0.0	0.27	1.44	0.80	0.73	—	17636	1075	5	103	0	0	7831	logfile
✔	8EEY	28065	2024-02-18	2022-09-07	2.53	2.25	2.57	2.5	0.006	0.88	0.0	0.05	16.42	0.01	1.937	0.37	0.14	1.8	98.1	0.0	0.01	0.60	0.80	4.57	2.5	0.005	0.69	0.0	0.05	18.41	0.01	2.142	4.46	3.10	2.6	97.3	0.0	0.68	0.64	0.64	0.87	3.90	20886	2393	6	66	4	0	0	logfile
✔	8B0G	15780	2024-02-19	2022-09-07	3.3	3.50	3.22	3.1	0.009	0.80	0.0	0.07	14.55	0.01	1.687	5.69	0.34	5.2	94.8	0.0	-0.94	0.84	0.81	2.69	3.1	0.004	0.69	0.0	0.05	14.53	0.00	1.960	7.37	1.23	4.6	95.4	0.0	-0.44	0.47	0.86	0.85	2.48	79270	5113	15	0	10	0	38789	logfile

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