Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8B0P	15791	2024-02-13	2022-09-07	2.86	3.13	2.92	3.1	0.005	0.71	2.0	0.34	10.46	0.01	2.235	5.12	0.97	3.2	96.6	0.2	-0.43	0.58	0.84	4.71	3.1	0.003	0.53	0.0	0.04	13.08	0.00	2.253	7.25	0.73	3.2	96.8	0.0	0.62	0.88	0.56	0.84	4.10	4016	510	2	0	1	0	0	logfile
✔	8EE7	28048	2024-02-17	2022-09-06	2.72	2.91	2.76	2.9	0.003	0.52	1.0	0.04	14.76	0.00	1.968	1.75	0.00	3.9	96.1	0.0	0.68	0.61	0.81	3.18	2.9	0.002	0.49	2.0	0.04	16.60	0.00	1.969	2.52	1.11	3.3	96.7	0.0	0.70	0.27	0.60	0.81	2.93	18094	1135	4	0	1	0	8906	logfile
✔	8GSo	34237	2024-02-15	2022-09-06	3.3	3.69	3.38	3.7	0.013	1.66	18.0	0.11	25.12	0.01	1.194	20.44	41.49	17.0	76.3	6.7	-5.21	0.57	0.72	1.47	3.7	0.004	0.84	0.0	0.04	17.91	0.01	2.175	14.22	4.43	13.5	86.1	0.4	-0.37	1.07	0.55	0.83	1.87	10624	1322	2	0	0	0	0	logfile
✔	8EDX	28042	2024-02-16	2022-09-06	2.81	2.99	2.70	2.9	0.006	0.60	0.0	0.05	15.44	0.00	2.378	5.42	0.71	4.7	95.3	0.0	-2.86	0.78	0.92	5.20	2.9	0.005	0.58	0.0	0.04	16.17	0.00	2.270	5.73	2.78	2.2	97.8	0.0	-0.69	0.32	0.79	0.92	5.11	16074	2088	6	0	0	0	0	logfile
✔	8EEA	28049	2024-02-19	2022-09-06	2.6	2.80	—	2.9	0.003	0.52	0.0	0.04	15.18	0.00	1.983	1.97	0.00	3.7	96.3	0.0	0.61	0.64	0.79	3.14	2.8	0.002	0.49	0.0	0.04	17.43	0.00	2.166	3.26	1.21	3.2	96.8	0.0	0.73	1.16	0.69	0.83	2.88	24480	3017	12	0	4	0	0	logfile
✔	8EE4	28045	2024-02-23	2022-09-06	2.6	2.76	2.67	2.7	0.002	0.63	0.0	0.11	15.55	0.00	2.061	3.98	0.00	4.3	95.7	0.0	-0.75	0.66	0.79	2.43	2.8	0.003	0.63	0.0	0.10	17.70	0.00	2.088	3.64	1.37	4.6	95.4	0.0	-0.74	0.34	0.66	0.81	2.38	37480	2338	10	0	4	0	18599	logfile
✔	8B01	15775	2024-02-13	2022-09-06	3.03	3.65	3.02	3.5	0.004	0.60	0.0	0.04	13.53	0.00	2.217	2.82	0.53	2.9	97.1	0.0	2.16	0.67	0.82	2.94	3.5	0.003	1.05	1.0	0.04	15.03	0.00	2.173	3.88	1.58	1.6	98.2	0.1	1.95	0.41	0.71	0.86	2.59	5478	684	5	0	15	0	0	logfile
✔	8EEB	28050	2024-02-16	2022-09-06	3.9	4.36	3.88	4.0	0.003	0.66	0.0	0.05	15.26	0.00	2.221	9.09	0.00	3.4	96.6	0.0	0.48	0.73	0.80	1.42	4.0	0.002	0.66	0.0	0.04	15.30	0.00	2.197	10.17	1.18	3.6	96.4	0.0	0.84	0.94	0.73	0.81	1.46	14672	1873	7	0	16	0	0	logfile
✔	8GSE	34233	2024-02-13	2022-09-06	3.7	3.78	3.73	3.8	0.005	0.68	0.0	0.05	13.93	0.01	2.246	5.81	0.00	5.9	94.1	0.0	-1.94	0.43	0.85	2.71	3.8	0.003	0.55	0.0	0.04	15.74	0.00	2.208	5.33	1.33	4.5	95.5	0.0	-1.47	1.39	0.42	0.82	2.39	7474	952	5	0	0	0	0	logfile
✔	8AZ3	15731	2024-02-13	2022-09-05	3.4	2.64	3.43	3.6	0.005	0.66	0.0	0.06	9.60	0.00	2.509	6.87	0.00	0.0	100.0	0.0	-2.88	0.47	0.83	5.76	3.6	0.007	0.70	0.0	0.05	12.42	0.00	2.196	5.22	1.59	9.0	91.0	0.0	-4.69	0.61	0.49	0.86	6.00	4040	540	20	0	20	0	0	logfile
✔	8GS9	34226	2024-02-13	2022-09-05	2.66	2.88	2.77	2.9	0.003	0.55	0.0	0.04	11.98	0.00	2.297	3.11	0.60	5.6	93.8	0.5	-0.51	0.61	0.71	2.97	2.9	0.003	0.68	0.0	0.04	16.16	0.00	2.336	8.18	3.88	3.8	96.2	0.0	-0.58	1.15	0.63	0.75	2.83	3116	396	3	0	0	0	0	logfile
✔	8AZ1	15729	2024-02-13	2022-09-05	3.1	3.21	3.04	3.5	0.004	0.57	0.0	0.04	10.90	0.00	2.374	8.00	0.00	0.0	100.0	0.0	-1.57	0.49	0.85	5.69	3.5	0.003	0.57	0.0	0.04	13.97	0.00	2.262	5.14	0.00	1.7	98.3	0.0	-2.58	0.37	0.45	0.84	5.53	1830	250	10	0	10	0	0	logfile
✔	8EDL	28035	2024-02-13	2022-09-05	3.7	3.30	3.60	3.1	0.002	0.52	0.0	0.03	11.07	0.00	2.307	6.09	0.00	2.1	97.7	0.3	2.83	0.62	0.61	-0.09	3.1	0.002	0.56	0.0	0.03	13.85	0.00	2.336	7.26	3.08	2.1	97.9	0.0	3.82	1.11	0.68	0.73	2.47	2470	395	1	0	0	0	0	logfile
✔	8EDo	28038	2024-02-13	2022-09-05	3.4	3.18	3.36	3.1	0.004	0.61	0.0	0.04	11.35	0.00	2.288	6.16	0.00	4.3	95.5	0.1	2.05	0.68	0.76	2.87	3.1	0.003	0.55	0.0	0.04	13.44	0.00	2.287	4.42	4.02	4.7	95.3	0.0	2.78	0.32	0.68	0.77	2.23	4465	751	2	0	0	0	0	logfile
✔	8EDM	28036	2024-02-13	2022-09-05	3.6	3.02	3.55	3.0	0.002	0.44	0.0	0.04	9.61	0.00	2.271	3.02	0.00	3.2	96.8	0.0	2.82	0.64	0.66	2.16	3.0	0.003	0.50	0.0	0.04	11.58	0.00	2.192	3.02	1.49	4.6	95.4	0.0	2.47	1.83	0.68	0.74	2.65	2509	442	2	0	0	0	0	logfile
✔	8EDN	28037	2024-02-13	2022-09-05	3.8	3.47	3.75	3.3	0.002	0.58	0.0	0.04	11.31	0.00	2.205	6.81	0.46	5.7	94.1	0.2	2.77	0.65	0.60	0.13	3.3	0.002	0.58	0.0	0.03	13.70	0.00	2.177	7.12	3.23	3.7	96.1	0.2	2.99	1.03	0.70	0.71	2.12	3683	579	1	0	0	0	0	logfile
✔	8GS8	34225	2024-02-14	2022-09-05	2.86	3.07	2.83	3.1	0.032	1.67	0.0	0.52	14.96	0.01	2.168	12.06	0.67	7.9	92.1	0.1	-4.22	0.62	0.84	3.93	3.1	0.003	1.05	0.0	0.06	15.96	0.00	1.790	9.55	1.00	2.2	97.8	0.0	0.98	1.10	0.61	0.86	3.50	8637	1090	8	0	7	0	0	logfile
✔	8AZ4	15753	2024-02-13	2022-09-05	2.2	2.27	2.10	2.2	0.006	0.72	0.0	0.05	10.22	0.00	2.292	1.89	0.00	7.7	92.3	0.0	-3.94	0.57	0.88	8.31	2.2	0.004	0.69	0.0	0.05	13.32	0.00	2.281	2.83	2.92	7.7	92.3	0.0	-4.28	0.47	0.59	0.91	7.74	2280	280	20	0	10	100	0	logfile
✔	8GS6	34221	2024-02-19	2022-09-05	2.86	3.44	2.87	3.3	0.004	0.62	0.0	0.05	14.84	0.00	2.140	6.25	0.00	4.4	95.6	0.0	-0.45	0.83	0.84	2.81	3.3	0.004	0.62	0.0	0.05	15.65	0.00	2.141	6.31	1.50	5.1	94.9	0.0	-0.32	0.32	0.84	0.85	2.69	24538	3058	11	0	41	0	0	logfile
✔	8AZ6	15755	2024-02-13	2022-09-05	3.1	3.15	3.07	3.1	0.004	0.43	0.0	0.04	9.46	0.00	2.212	5.45	0.00	4.8	95.2	0.0	-4.04	0.50	0.84	6.14	3.1	0.006	0.62	0.0	0.04	13.34	0.00	2.217	5.00	4.47	6.4	93.6	0.0	-5.33	0.73	0.51	0.87	6.00	3420	460	20	0	20	0	0	logfile

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