Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8E29	27829	2024-02-13	2022-08-14	3.1	3.72	3.29	3.6	0.012	1.14	0.0	0.07	17.73	0.01	2.305	6.53	0.66	1.5	98.5	0.0	-1.55	0.70	0.79	3.22	3.6	0.003	0.55	0.0	0.04	18.21	0.00	2.153	6.45	1.48	1.9	98.1	0.0	0.66	0.38	0.61	0.73	2.80	6197	692	2	33	0	0	0	logfile
✔	8E28	27828	2024-02-13	2022-08-14	3.1	3.26	3.15	3.2	0.004	0.83	0.0	0.05	17.29	0.01	2.316	3.83	0.00	1.5	98.5	0.0	-1.72	0.75	0.85	3.17	3.2	0.002	0.47	0.0	0.04	17.85	0.00	2.221	4.97	1.98	1.5	98.5	0.0	0.22	0.71	0.76	0.87	2.93	5789	690	2	15	0	0	0	logfile
✔	8E27	27827	2024-02-13	2022-08-14	3.4	3.73	3.56	3.7	0.010	1.10	0.0	0.07	14.24	0.01	2.297	2.69	0.34	1.2	98.8	0.0	-0.92	0.71	0.84	2.46	3.7	0.003	0.57	0.0	0.04	16.04	0.00	2.274	4.45	2.02	2.7	97.3	0.0	0.37	0.53	0.69	0.84	2.42	5371	676	1	0	0	0	0	logfile
✔	7YTD	34086	2024-02-18	2022-08-14	3.71	4.26	3.90	4.0	0.005	0.96	12.0	0.08	14.87	0.01	1.188	29.57	4.37	8.6	90.5	0.9	-1.91	0.77	0.76	1.47	4.0	0.006	0.84	0.0	0.05	15.90	0.00	2.030	22.11	3.92	9.8	90.2	0.0	-1.73	0.65	0.78	0.80	1.68	21693	2777	25	0	10	0	0	logfile
✔	8AQT	15589	2024-02-13	2022-08-13	4.4	4.64	4.72	4.5	0.003	0.70	1.0	0.04	14.46	0.01	2.165	9.80	0.45	5.4	93.8	0.8	-1.80	0.59	0.59	—	4.5	0.003	0.68	0.0	0.05	14.55	0.00	2.124	11.34	0.15	5.7	94.2	0.1	-1.24	1.65	0.62	0.63	—	6321	777	4	0	3	0	0	logfile
✔	7YSW	34084	2024-02-15	2022-08-13	3.03	3.51	3.06	3.4	0.007	1.01	0.0	0.20	24.63	0.00	1.948	10.59	4.77	6.4	93.6	0.0	-1.74	0.76	0.80	3.19	3.4	0.003	0.61	0.0	0.05	18.10	0.00	1.404	10.66	3.85	6.3	93.6	0.1	-1.20	0.30	0.75	0.79	3.21	12407	1517	7	0	12	0	0	logfile
✔	8AQW	15592	2024-02-13	2022-08-13	3.3	3.63	3.42	3.6	0.002	0.59	0.0	0.04	15.58	0.00	2.177	5.96	0.15	6.1	93.6	0.3	-0.74	0.61	0.76	2.62	3.6	0.003	0.63	0.0	0.04	15.56	0.00	2.126	8.09	1.60	6.2	93.5	0.3	-0.64	0.39	0.63	0.77	1.94	6457	789	4	0	3	0	0	logfile
✔	8AQS	15588	2024-02-13	2022-08-13	2.92	3.24	3.03	3.2	0.003	0.54	0.0	0.04	14.74	0.00	2.227	4.10	0.00	2.9	96.8	0.3	0.71	0.62	0.81	2.20	3.2	0.003	0.59	0.0	0.04	15.61	0.00	2.151	4.57	2.16	3.7	96.0	0.3	0.63	1.08	0.67	0.85	1.93	6493	788	4	0	7	1	0	logfile
✔	8AQU	15590	2024-02-13	2022-08-13	3.22	3.49	3.40	3.5	0.003	0.62	0.0	0.04	16.84	0.00	2.240	8.39	0.15	8.2	91.8	0.0	-1.47	0.54	0.66	1.53	3.5	0.002	0.66	0.0	0.04	16.70	0.00	2.143	8.64	2.96	7.9	92.1	0.0	-1.47	0.58	0.54	0.70	1.06	6340	777	4	0	3	0	0	logfile
✔	7YSU	34082	2024-02-15	2022-08-13	3.2	3.84	3.33	3.7	0.005	0.94	0.0	0.22	23.91	0.01	2.065	11.09	0.31	6.4	93.6	0.0	-2.08	0.73	0.76	2.52	3.7	0.004	0.64	0.0	0.05	18.66	0.00	1.969	11.63	3.52	7.1	92.9	0.0	-1.45	0.29	0.74	0.78	2.56	12430	1521	7	0	12	0	0	logfile
✔	8AQV	15591	2024-02-13	2022-08-13	2.96	3.40	3.09	3.4	0.003	0.71	0.0	0.04	12.96	0.00	2.164	4.53	0.00	4.8	94.5	0.6	-1.32	0.64	0.80	2.89	3.4	0.002	0.56	0.0	0.04	15.81	0.00	2.204	5.48	1.75	4.6	94.9	0.5	0.27	0.55	0.63	0.81	2.21	6447	789	4	0	3	0	0	logfile
✔	7YSH	34075	2024-02-15	2022-08-12	2.74	3.04	2.84	3.1	0.010	1.21	1.0	0.08	20.56	0.01	1.859	7.31	1.06	8.0	91.6	0.5	-3.55	0.66	0.79	4.03	3.1	0.005	0.72	0.0	0.05	17.05	0.00	1.932	10.74	1.89	8.4	91.4	0.2	-1.17	1.94	0.65	0.80	3.89	12480	1525	7	0	11	0	0	logfile
✔	7YSN	34077	2024-02-13	2022-08-12	3.5	4.04	3.45	3.7	0.006	0.69	0.0	0.04	14.72	0.00	2.131	15.18	0.00	3.6	96.4	0.0	0.33	0.81	0.79	1.89	3.7	0.003	0.73	0.0	0.05	16.78	0.00	2.149	20.53	1.90	4.9	95.1	0.0	-0.55	0.98	0.82	0.80	1.67	6844	864	4	0	2	0	0	logfile
✔	8E20	27826	2024-02-21	2022-08-12	3.6	3.78	3.50	3.1	0.004	0.76	0.0	0.04	12.32	0.01	2.228	10.57	0.82	5.4	94.4	0.2	0.52	0.74	0.67	1.11	3.1	0.002	0.54	0.0	0.04	13.50	0.00	2.184	7.41	0.71	4.7	95.2	0.1	1.97	0.40	0.82	0.75	0.70	29341	4515	2	0	0	0	0	logfile
✔	7YSG	34074	2024-02-19	2022-08-12	3.18	3.59	3.37	3.5	0.017	1.73	86.0	0.11	18.11	0.01	1.189	44.73	11.57	9.9	86.8	3.3	-2.31	0.74	0.79	1.95	3.5	0.005	0.76	0.0	0.05	16.96	0.01	2.103	16.50	4.82	8.1	91.7	0.2	-1.72	0.60	0.72	0.78	1.93	25676	3290	27	0	12	0	0	logfile
✔	7YSR	34081	2024-02-15	2022-08-12	4.3	4.43	4.10	4.3	0.003	0.59	0.0	0.04	14.91	0.00	2.142	14.24	0.00	4.0	96.0	0.0	0.51	0.60	0.82	—	4.3	0.002	0.57	0.0	0.04	14.76	0.00	2.142	13.64	0.00	3.9	96.1	0.0	0.77	1.13	0.60	0.83	—	13456	1696	8	0	4	0	0	logfile
✔	7YRY	34066	2024-02-19	2022-08-11	3.0	2.80	2.85	2.9	0.002	0.54	0.0	0.04	17.93	0.00	2.041	5.87	3.35	2.5	97.5	0.0	0.38	0.86	0.88	2.67	2.9	0.003	0.57	0.0	0.04	17.71	0.00	1.956	6.25	3.05	3.3	96.7	0.0	0.45	0.21	0.86	0.89	2.59	25056	3282	13	0	9	0	0	logfile
✔	8APX	15578	2024-02-24	2022-08-10	3.2	2.59	3.40	3.2	0.011	1.24	4.0	0.05	18.04	0.01	2.086	15.86	0.66	6.7	93.3	0.0	-1.55	0.75	0.80	2.01	3.2	0.003	0.66	0.0	0.04	18.28	0.00	2.056	15.62	5.00	5.3	94.7	0.0	-1.21	0.39	0.75	0.80	2.12	41616	5292	24	0	12	0	0	logfile
✔	8APL	15574	2024-02-18	2022-08-10	4.1	3.88	4.12	3.8	0.002	0.48	0.0	0.04	9.13	0.00	2.213	10.27	1.93	3.1	96.9	0.0	0.14	0.76	0.73	—	3.7	0.004	0.67	0.0	0.04	11.13	0.00	2.091	18.63	0.04	4.8	95.2	0.0	-0.30	1.52	0.77	0.74	—	21888	2694	6	0	0	0	0	logfile
✔	8E1M	27825	2024-02-13	2022-08-10	2.9	3.48	2.86	3.2	0.007	0.77	0.0	0.04	14.84	0.00	2.179	7.34	0.00	2.7	97.3	0.0	-0.83	0.69	0.86	4.21	3.3	0.003	0.64	0.0	0.04	15.18	0.00	2.236	9.04	1.29	2.9	97.1	0.0	1.87	0.60	0.65	0.85	3.20	5691	760	7	0	2	0	0	logfile

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