Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8APL	15574	2024-02-18	2022-08-10	4.1	3.88	4.12	3.8	0.002	0.48	0.0	0.04	9.13	0.00	2.213	10.27	1.93	3.1	96.9	0.0	0.14	0.76	0.73	—	3.7	0.004	0.67	0.0	0.04	11.13	0.00	2.091	18.63	0.04	4.8	95.2	0.0	-0.30	1.52	0.77	0.74	—	21888	2694	6	0	0	0	0	logfile
✔	8E1M	27825	2024-02-13	2022-08-10	2.9	3.48	2.86	3.2	0.007	0.77	0.0	0.04	14.84	0.00	2.179	7.34	0.00	2.7	97.3	0.0	-0.83	0.69	0.86	4.21	3.3	0.003	0.64	0.0	0.04	15.18	0.00	2.236	9.04	1.29	2.9	97.1	0.0	1.87	0.60	0.65	0.85	3.20	5691	760	7	0	2	0	0	logfile
✔	7YR6	34047	2024-02-13	2022-08-09	4.8	5.13	4.65	4.7	0.004	0.88	0.0	0.05	26.03	0.00	2.291	7.11	3.30	15.1	84.9	0.0	-5.39	0.81	0.74	—	4.7	0.005	0.81	0.0	0.04	26.20	0.00	2.103	42.38	0.00	26.4	73.6	0.0	-4.97	0.78	0.83	0.81	—	4248	220	5	118	0	0	0	logfile
✔	7YRD	34053	2024-02-16	2022-08-09	3.2	3.20	3.81	3.1	0.007	0.76	2.0	0.04	26.76	0.01	2.057	13.40	0.70	5.5	94.5	0.0	-0.70	0.66	0.80	1.98	3.1	0.004	0.62	0.0	0.04	26.73	0.00	2.146	12.34	2.32	4.3	95.7	0.0	-0.09	1.07	0.65	0.81	1.41	14276	1051	12	292	2	0	0	logfile
✔	8AP8	15561	2024-02-15	2022-08-09	3.7	3.98	3.47	3.8	0.002	0.39	0.0	0.04	8.11	0.00	2.139	2.40	0.31	1.6	98.4	0.0	2.44	0.72	0.82	1.61	3.8	0.004	0.53	0.0	0.04	13.68	0.00	2.147	6.12	1.71	3.4	96.6	0.0	2.03	1.16	0.74	0.84	1.48	12083	767	5	0	0	0	6098	logfile
✔	8E14	27823	2024-02-15	2022-08-09	3.36	4.87	3.36	3.5	0.007	1.12	1.0	0.08	24.72	0.01	2.182	16.48	0.41	17.7	82.3	0.0	-2.84	0.92	0.86	0.70	3.5	0.003	0.68	0.0	0.04	24.56	0.00	2.174	13.77	4.65	16.2	83.8	0.0	-2.36	0.32	0.92	0.86	0.90	12442	1161	16	160	2	0	0	logfile
✔	8AP1	15556	2024-02-15	2022-08-09	3.47	3.19	3.47	3.4	0.005	0.76	0.0	0.05	18.36	0.00	2.023	5.94	0.27	3.9	96.1	0.0	0.17	0.66	0.82	3.13	3.4	0.004	0.55	0.0	0.04	19.40	0.00	1.980	6.12	2.28	3.9	96.1	0.0	0.70	0.28	0.67	0.84	2.83	11221	1257	6	54	3	0	0	logfile
✔	8E0Q	27822	2024-02-20	2022-08-09	2.66	2.38	—	2.1	0.004	0.54	0.0	0.04	12.18	0.00	2.205	10.25	4.74	4.2	95.7	0.1	0.46	0.78	0.80	2.83	2.1	0.003	0.67	0.0	0.04	15.20	0.00	2.106	12.37	4.64	5.3	94.6	0.2	0.57	0.42	0.78	0.81	2.48	26604	3378	4	0	6	0	0	logfile
✔	8AP7	15560	2024-02-19	2022-08-09	2.7	2.82	2.67	2.8	0.015	0.87	0.0	0.05	18.01	0.01	1.432	1.69	0.44	1.6	98.4	0.0	2.70	0.65	0.87	5.11	2.8	0.003	0.51	0.0	0.03	17.00	0.00	1.830	7.73	1.01	2.0	98.0	0.0	2.52	1.04	0.66	0.89	4.61	71476	4076	58	0	44	24	33618	logfile
✔	7YRG	34055	2024-02-16	2022-08-09	4.2	4.22	2.00	4.1	0.007	0.82	4.0	0.05	25.62	0.01	1.035	27.90	1.11	6.4	93.6	0.0	-1.23	0.67	0.63	—	4.2	0.004	0.69	0.0	0.04	25.23	0.00	2.149	17.50	0.37	6.0	94.0	0.0	-0.86	1.41	0.75	0.77	—	16377	1313	14	292	4	0	0	logfile
✔	7YR7	34048	2024-02-13	2022-08-09	3.8	4.63	4.40	4.6	0.008	1.25	1.0	0.09	25.59	0.01	2.385	7.94	4.74	16.7	83.3	0.0	-5.36	0.64	0.60	0.33	4.6	0.004	0.80	0.0	0.04	25.52	0.00	2.109	23.71	8.39	23.0	77.0	0.0	-3.48	1.71	0.67	0.66	0.64	5102	330	7	118	0	0	0	logfile
✔	8AP4	15558	2024-02-20	2022-08-09	3.0	2.99	2.97	3.1	0.007	0.84	0.0	0.05	22.73	0.03	1.999	4.06	1.62	3.6	96.3	0.1	-0.03	0.86	0.88	2.78	3.1	0.004	0.66	0.0	0.03	22.68	0.01	2.047	10.18	2.94	3.4	96.5	0.0	-0.27	0.88	0.86	0.88	2.54	88614	3266	33	2940	0	0	0	logfile
✔	8E05	27817	2024-02-20	2022-08-08	4.6	4.86	5.04	4.7	0.004	0.73	1.0	0.05	11.91	0.01	2.169	3.78	0.00	3.6	96.4	0.0	-0.27	0.79	0.71	—	4.7	0.002	0.65	0.0	0.04	12.66	0.00	2.202	11.50	0.07	4.6	95.4	0.0	-0.80	0.74	0.80	0.74	—	27730	3498	4	2	0	0	0	logfile
✔	8DZP	27804	2024-02-14	2022-08-08	2.71	2.09	2.70	1.9	0.019	0.72	0.0	0.10	13.90	0.01	2.216	5.26	0.11	3.6	96.4	0.0	-0.46	0.78	0.78	3.63	1.9	0.005	0.64	0.0	0.04	15.66	0.00	2.112	8.18	2.35	4.5	95.5	0.0	0.44	0.33	0.81	0.82	3.70	8657	1120	6	0	1	0	0	logfile
✔	7YQM	34029	2024-02-13	2022-08-08	2.89	3.15	2.89	3.2	0.005	0.58	0.0	0.05	11.88	0.00	2.294	1.86	0.17	4.7	95.3	0.0	-0.02	0.67	0.78	4.18	3.2	0.003	0.53	0.0	0.04	15.80	0.00	2.156	7.54	1.50	3.7	96.3	0.0	0.68	1.48	0.67	0.80	3.40	5656	723	1	0	0	0	0	logfile
✔	8DZR	27806	2024-02-13	2022-08-08	2.61	2.15	2.73	2.0	0.005	0.70	0.0	0.05	13.75	0.00	2.224	4.85	0.00	3.3	96.7	0.0	-0.09	0.76	0.74	3.46	1.9	0.004	0.61	0.0	0.04	15.79	0.00	2.092	9.31	2.49	4.1	95.9	0.0	0.52	0.32	0.78	0.79	3.22	7944	1073	6	0	1	0	0	logfile
✔	8E01	27812	2024-02-21	2022-08-08	3.4	3.80	3.71	3.8	0.002	0.56	0.0	0.04	17.85	0.00	2.278	9.40	0.41	2.0	98.0	0.0	-0.28	0.63	0.61	0.23	3.8	0.003	0.65	0.0	0.05	18.21	0.00	2.132	12.73	5.13	3.2	96.8	0.0	0.01	1.03	0.73	0.79	1.13	91080	12060	60	0	0	0	0	logfile
✔	7YR2	34043	2024-02-21	2022-08-08	3.3	3.60	3.49	3.6	0.005	0.69	0.0	0.05	14.56	0.00	2.101	11.18	0.03	7.0	92.8	0.2	-1.35	0.65	0.74	1.92	3.6	0.003	0.58	0.0	0.04	15.10	0.00	2.082	9.72	1.87	7.7	92.3	0.1	-0.90	0.38	0.66	0.78	1.84	31492	3888	18	0	69	71	0	logfile
✔	7YQU	34035	2024-02-19	2022-08-08	3.19	3.43	3.24	3.4	0.005	0.72	6.0	0.05	14.04	0.00	1.425	7.13	0.14	8.5	91.5	0.0	-1.47	0.75	0.85	3.28	3.5	0.004	0.58	0.0	0.05	15.05	0.00	2.176	5.09	1.84	8.0	92.0	0.0	-1.03	0.32	0.73	0.85	3.09	25587	3189	12	0	48	0	0	logfile
✔	8AoW	15554	2024-02-24	2022-08-08	2.7	2.68	2.76	2.8	0.014	0.94	1.0	0.05	16.91	0.01	1.869	7.27	1.60	2.2	97.8	0.0	-0.28	0.74	0.85	3.41	2.7	0.004	0.62	0.0	0.05	16.80	0.00	1.889	6.05	1.41	2.2	97.8	0.0	0.04	0.44	0.77	0.90	4.46	43632	5424	36	0	48	324	0	logfile

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