Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YR4	34045	2024-02-13	2022-08-08	4.12	4.78	5.11	4.9	0.008	1.16	0.0	0.05	14.91	0.01	2.224	7.76	0.00	6.4	93.6	0.0	-1.79	0.56	0.53	—	4.8	0.003	0.79	0.0	0.05	14.57	0.00	2.025	19.84	0.00	6.3	93.7	0.0	-0.64	3.45	0.63	0.76	—	6394	787	2	0	0	0	0	logfile
✔	8E00	27811	2024-02-19	2022-08-08	3.6	4.06	3.76	3.9	0.004	0.79	4.0	0.05	12.79	0.01	2.201	2.10	0.47	1.8	98.2	0.0	1.15	0.77	0.82	2.00	3.9	0.002	0.50	0.0	0.04	13.25	0.00	2.122	5.79	0.79	1.9	98.1	0.0	1.79	0.48	0.78	0.84	1.80	24794	3055	4	0	4	0	0	logfile
✔	8DZS	27807	2024-02-14	2022-08-08	2.65	2.07	2.73	2.0	0.006	0.78	0.0	0.05	13.94	0.01	2.253	5.63	0.12	4.2	95.8	0.0	-1.00	0.77	0.75	3.73	1.9	0.003	0.59	0.0	0.04	16.15	0.00	2.119	9.03	1.65	3.8	96.2	0.0	-0.17	0.94	0.79	0.79	3.28	8245	1100	6	0	1	0	0	logfile
✔	8DZW	27808	2024-02-25	2022-08-08	2.46	2.76	2.62	2.8	0.007	1.16	9.0	0.06	14.16	0.01	2.112	3.13	1.29	5.5	94.4	0.1	-0.58	0.71	0.81	3.50	2.7	0.004	0.64	0.0	0.05	15.61	0.00	2.000	2.86	1.34	5.3	94.7	0.0	-0.42	1.21	0.72	0.84	3.27	40250	2655	9	0	0	0	20048	logfile
✔	8DZP	27804	2024-02-14	2022-08-08	2.71	2.09	2.70	1.9	0.019	0.72	0.0	0.10	13.90	0.01	2.216	5.26	0.11	3.6	96.4	0.0	-0.46	0.78	0.78	3.63	1.9	0.005	0.64	0.0	0.04	15.66	0.00	2.112	8.18	2.35	4.5	95.5	0.0	0.44	0.33	0.81	0.82	3.70	8657	1120	6	0	1	0	0	logfile
✔	8AoX	15555	2024-02-20	2022-08-08	2.8	2.28	2.75	2.3	0.005	0.73	1.0	0.04	16.82	0.00	1.792	12.98	1.25	1.3	98.7	0.0	-1.25	0.64	0.74	2.88	2.3	0.003	0.57	0.0	0.04	16.61	0.00	2.069	12.37	2.64	2.2	97.8	0.0	-1.10	0.26	0.65	0.77	3.03	87816	10368	72	0	48	4848	0	logfile
✔	7YR3	34044	2024-02-22	2022-08-08	3.52	3.87	3.79	3.8	0.004	0.63	0.0	0.04	14.55	0.00	1.930	12.56	0.13	7.8	92.0	0.2	-0.88	0.70	0.74	1.65	3.8	0.003	0.62	0.0	0.04	15.14	0.00	2.093	12.16	1.43	7.5	92.4	0.1	-0.77	0.38	0.70	0.76	1.45	35899	4400	21	0	75	142	0	logfile
✔	7YR5	34046	2024-02-13	2022-08-08	3.63	3.97	3.62	3.9	0.005	0.81	0.0	0.05	13.92	0.00	2.250	8.97	0.00	5.5	94.5	0.0	-0.05	0.57	0.78	1.28	3.9	0.004	0.67	0.0	0.04	16.67	0.00	2.146	12.17	3.80	6.5	93.5	0.0	0.08	0.49	0.58	0.80	0.92	4828	622	2	0	0	0	0	logfile
✔	7YQV	34036	2024-02-20	2022-08-08	3.58	3.80	3.60	3.8	0.004	0.64	0.0	0.05	14.89	0.00	2.090	8.41	0.04	8.8	91.1	0.1	-1.83	0.75	0.77	1.29	3.7	0.004	0.74	1.0	0.05	15.16	0.00	1.792	8.55	2.18	7.5	92.5	0.1	-1.43	1.24	0.78	0.77	1.53	26488	3291	15	0	63	0	0	logfile
✔	7YQW	34037	2024-02-19	2022-08-08	3.51	3.86	3.56	3.8	0.004	0.64	0.0	0.05	15.07	0.00	1.820	9.01	0.18	7.7	92.2	0.0	-1.45	0.79	0.84	2.69	3.8	0.002	0.57	0.0	0.04	13.94	0.00	2.185	5.92	1.86	7.0	92.9	0.0	-1.12	0.32	0.78	0.84	2.23	25422	3126	21	0	69	0	0	logfile
✔	7YQZ	34040	2024-02-20	2022-08-08	3.84	4.12	3.90	3.9	0.005	0.80	2.0	0.05	14.51	0.01	1.625	6.53	0.07	6.8	92.9	0.3	-2.84	0.80	0.80	1.56	3.9	0.002	0.61	0.0	0.04	14.86	0.00	2.141	10.26	1.34	6.6	93.4	0.0	-1.53	1.17	0.80	0.81	1.31	28266	3531	12	0	53	0	0	logfile
✔	7YQY	34039	2024-02-21	2022-08-08	3.74	4.03	3.84	3.9	0.004	0.65	0.0	0.06	15.47	0.01	1.925	10.62	0.18	9.0	90.9	0.1	-2.25	0.80	0.81	1.73	3.9	0.003	0.64	0.0	0.05	15.09	0.00	2.132	11.85	1.93	9.3	90.6	0.1	-1.91	1.16	0.80	0.81	1.49	31983	3984	25	0	75	0	0	logfile
✔	7YQX	34038	2024-02-21	2022-08-08	3.72	4.05	3.92	3.9	0.004	0.67	0.0	0.05	15.31	0.00	2.151	11.97	0.06	8.8	91.1	0.1	-2.10	0.81	0.80	1.61	3.9	0.003	0.61	0.0	0.05	15.20	0.00	2.181	10.16	1.70	8.5	91.5	0.0	-1.65	1.12	0.78	0.76	1.13	30168	3753	22	0	71	0	0	logfile
✔	7YR0	34041	2024-02-13	2022-08-08	3.98	4.16	3.84	4.1	0.003	0.68	0.0	0.05	15.97	0.00	2.164	11.64	0.00	8.3	91.4	0.2	-1.76	0.64	0.77	2.12	4.1	0.003	0.67	0.0	0.04	15.39	0.00	2.232	12.69	3.65	8.8	91.0	0.2	-1.73	0.41	0.64	0.78	1.70	3383	427	4	0	4	0	0	logfile
✔	7YQM	34029	2024-02-13	2022-08-08	2.89	3.15	2.89	3.2	0.005	0.58	0.0	0.05	11.88	0.00	2.294	1.86	0.17	4.7	95.3	0.0	-0.02	0.67	0.78	4.18	3.2	0.003	0.53	0.0	0.04	15.80	0.00	2.156	7.54	1.50	3.7	96.3	0.0	0.68	1.48	0.67	0.80	3.40	5656	723	1	0	0	0	0	logfile
✔	8AoV	15553	2024-02-24	2022-08-08	2.48	2.62	2.54	2.6	0.003	0.57	0.0	0.04	16.27	0.00	2.044	8.08	2.01	3.0	97.0	0.0	-0.35	0.74	0.84	3.85	2.6	0.003	0.53	0.0	0.04	16.35	0.00	2.062	7.25	2.45	2.7	97.3	0.0	-0.03	0.16	0.73	0.82	3.81	42900	5352	36	0	24	228	0	logfile
✔	8E05	27817	2024-02-20	2022-08-08	4.6	4.86	5.04	4.7	0.004	0.73	1.0	0.05	11.91	0.01	2.169	3.78	0.00	3.6	96.4	0.0	-0.27	0.79	0.71	—	4.7	0.002	0.65	0.0	0.04	12.66	0.00	2.202	11.50	0.07	4.6	95.4	0.0	-0.80	0.74	0.80	0.74	—	27730	3498	4	2	0	0	0	logfile
✔	8DZH	27798	2024-02-21	2022-08-07	3.2	4.76	3.29	2.8	0.010	0.90	1.0	0.06	21.51	0.01	1.642	18.50	0.26	5.3	94.5	0.2	-0.03	0.86	0.86	1.74	2.5	0.010	0.86	0.0	0.05	18.03	0.00	1.642	19.07	5.16	5.6	94.1	0.3	-0.08	0.36	0.87	0.88	1.77	31956	3966	39	0	73	0	0	logfile
✔	8DZJ	27801	2024-02-14	2022-08-07	2.9	3.60	2.84	3.0	0.004	0.60	0.0	0.04	21.35	0.00	2.209	12.65	0.38	1.5	98.5	0.0	0.94	0.77	0.71	3.07	3.0	0.004	0.64	0.0	0.04	21.55	0.00	2.125	14.63	1.51	2.3	97.7	0.0	1.11	0.58	0.85	0.81	2.80	9030	613	6	190	1	0	0	logfile
✔	8DZG	27797	2024-02-17	2022-08-07	3.1	3.44	3.21	3.5	0.008	0.73	0.0	0.04	16.80	0.00	2.076	2.92	0.29	4.8	95.0	0.2	-0.15	0.67	0.79	3.03	3.5	0.003	0.60	0.0	0.04	16.90	0.00	2.156	5.46	1.87	5.9	93.7	0.4	0.36	1.14	0.70	0.84	3.57	19758	2520	12	0	18	0	0	logfile

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