Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DXQ	27773	2024-02-14	2022-08-02	3.8	4.02	3.81	3.9	0.002	0.52	0.0	0.04	4.66	0.00	2.301	1.14	0.00	10.1	89.9	0.0	0.26	0.65	0.71	—	3.9	0.004	0.64	0.0	0.04	5.26	0.00	2.238	1.07	0.00	12.2	87.7	0.0	0.18	0.28	0.64	0.69	—	10435	2101	7	0	0	0	0	logfile
✔	8DXN	27770	2024-02-17	2022-08-02	3.4	3.71	3.47	3.7	0.003	0.55	0.0	0.04	15.09	0.00	2.166	5.09	0.00	7.1	92.9	0.0	0.69	0.70	0.78	2.04	3.7	0.003	0.56	0.0	0.04	17.19	0.00	2.172	6.33	3.35	6.0	94.0	0.0	1.36	0.42	0.63	0.80	1.30	17499	2101	7	0	0	0	0	logfile
✔	8DXo	27771	2024-02-17	2022-08-02	3.6	3.87	3.62	3.8	0.002	0.53	0.0	0.04	14.80	0.00	2.195	4.89	0.00	6.5	93.5	0.0	0.37	0.68	0.75	1.60	3.8	0.003	0.56	0.0	0.04	17.01	0.00	2.189	6.21	2.94	6.5	93.5	0.0	0.98	1.21	0.68	0.79	1.22	17499	2101	7	0	0	0	0	logfile
✔	8DXR	27774	2024-02-14	2022-08-02	4.0	4.31	4.01	4.2	0.004	0.81	0.0	0.04	5.27	0.00	2.255	1.54	0.00	11.6	88.3	0.1	-0.80	0.67	0.71	—	4.2	0.002	0.51	0.0	0.04	3.77	0.00	2.420	0.60	0.00	8.3	91.6	0.1	1.47	0.34	0.67	0.71	—	10435	2101	7	0	0	0	0	logfile
✔	8DWV	27761	2024-02-16	2022-08-02	3.6	4.99	3.80	3.6	0.004	0.74	4.0	0.05	14.51	0.00	2.076	6.82	0.28	8.8	90.6	0.6	-1.14	0.69	0.46	1.16	3.6	0.008	0.96	0.0	0.05	16.19	0.01	1.932	36.30	2.04	11.3	88.4	0.3	-1.65	2.24	0.88	0.82	0.85	16480	2084	6	0	0	0	0	logfile
✔	7YoZ	33991	2024-02-14	2022-08-02	4.3	4.57	4.38	4.3	0.003	0.55	0.0	0.03	27.41	0.00	2.269	6.78	0.00	1.4	98.6	0.0	0.64	0.85	0.72	—	4.3	0.004	0.71	0.0	0.04	29.21	0.00	2.180	17.33	0.20	1.7	98.3	0.0	0.76	1.77	0.89	0.83	—	9752	594	10	242	0	0	0	logfile
✔	7YP7	33995	2024-02-15	2022-08-02	3.1	3.27	3.27	3.2	0.007	0.95	0.0	0.06	15.19	0.01	1.823	5.31	1.44	7.7	91.7	0.6	-4.81	0.78	0.83	3.48	3.2	0.003	0.64	0.0	0.04	16.35	0.00	2.078	7.55	3.24	5.8	94.0	0.2	-1.02	1.66	0.81	0.86	2.82	7909	1007	5	0	0	0	0	logfile
✔	7YP1	33992	2024-02-13	2022-08-02	3.54	3.78	3.54	3.8	0.010	1.05	0.0	0.06	14.05	0.01	2.275	3.74	0.24	9.9	90.1	0.0	-5.19	0.66	0.84	3.95	3.8	0.004	0.61	0.0	0.04	16.07	0.00	2.200	6.28	4.58	6.3	93.7	0.0	-2.58	0.48	0.62	0.83	2.48	3770	490	4	0	0	0	0	logfile
✔	8DWS	27758	2024-02-17	2022-08-02	3.73	4.92	3.73	3.6	0.004	0.79	4.0	0.05	14.37	0.00	2.013	6.84	0.32	8.2	91.2	0.6	-1.47	0.69	0.45	0.78	3.6	0.007	0.91	0.0	0.05	15.99	0.00	2.054	32.75	1.74	10.5	89.0	0.6	-1.42	1.99	0.90	0.83	0.66	17229	2182	7	0	0	0	0	logfile
✔	7YP2	33994	2024-02-13	2022-08-02	3.52	3.74	3.49	3.7	0.007	0.93	0.0	0.05	14.66	0.01	2.294	3.19	0.00	8.0	92.0	0.0	-4.80	0.68	0.87	2.84	3.7	0.004	0.60	0.0	0.04	15.61	0.00	2.274	5.92	1.92	7.0	93.0	0.0	-1.56	0.39	0.65	0.86	2.91	4248	546	3	0	0	0	0	logfile
✔	8DWW	27763	2024-02-23	2022-08-02	3.13	2.40	3.26	2.2	0.003	0.64	0.0	0.05	13.53	0.00	2.062	2.35	0.26	1.4	98.5	0.1	0.92	0.55	0.79	3.10	2.1	0.005	0.75	0.0	0.05	14.88	0.01	2.096	3.73	2.11	4.8	95.2	0.0	-0.89	0.46	0.55	0.80	2.85	37900	4916	28	0	12	0	0	logfile
✔	7YoX	33989	2024-02-16	2022-08-02	3.95	4.33	4.09	4.1	0.006	1.31	8.0	0.10	27.06	0.01	0.786	33.58	46.70	1.0	98.8	0.2	2.84	0.82	0.70	0.48	4.1	0.005	0.98	1.0	0.05	19.34	0.00	1.843	28.27	7.91	3.3	96.7	0.0	0.08	1.36	0.85	0.78	0.49	13878	1749	6	0	0	0	0	logfile
✔	8DXP	27772	2024-02-17	2022-08-02	3.7	3.99	3.78	3.9	0.003	0.55	0.0	0.04	14.49	0.00	2.258	6.19	0.00	6.4	93.6	0.0	0.53	0.67	0.74	1.45	3.9	0.003	0.60	0.0	0.04	17.06	0.00	2.190	7.51	2.74	5.9	94.0	0.0	0.71	0.51	0.68	0.77	0.98	17465	2097	7	0	0	0	0	logfile
✔	7YoV	33988	2024-02-15	2022-08-02	3.25	3.39	3.20	3.3	0.011	1.17	0.0	0.06	11.20	0.01	2.102	6.46	1.14	7.6	92.4	0.0	-3.95	0.72	0.76	2.51	3.3	0.003	0.64	0.0	0.04	15.26	0.00	2.099	10.59	2.41	4.2	95.8	0.0	0.02	1.27	0.74	0.79	1.57	13232	1683	5	0	0	0	0	logfile
✔	7YoT	33986	2024-02-15	2022-08-02	3.0	3.12	2.07	3.1	0.009	1.03	0.0	0.06	10.47	0.01	2.279	4.54	0.66	4.2	95.8	0.0	-3.64	0.71	0.85	3.78	3.1	0.002	0.55	0.0	0.04	15.13	0.00	2.153	8.22	1.61	3.0	97.0	0.0	0.88	0.60	0.70	0.85	2.54	12182	1551	5	0	0	0	0	logfile
✔	8DWY	27767	2024-02-23	2022-08-02	3.18	2.41	3.26	2.2	0.003	0.57	1.0	0.05	13.06	0.01	2.126	3.37	0.48	3.0	97.0	0.0	-0.55	0.53	0.80	3.21	2.1	0.003	0.73	1.0	0.05	14.34	0.01	2.100	3.38	2.74	4.1	95.9	0.0	-1.01	0.39	0.53	0.80	2.93	38048	4920	28	0	12	0	0	logfile
✔	8DWX	27765	2024-02-23	2022-08-02	3.27	2.42	3.39	2.2	0.003	0.62	1.0	0.05	13.24	0.01	2.116	3.79	0.10	2.1	97.9	0.0	-0.27	0.56	0.79	3.27	2.2	0.002	0.61	0.0	0.04	14.48	0.01	2.134	3.59	2.16	3.7	96.3	0.0	-0.66	0.38	0.54	0.78	2.95	38228	4956	28	0	12	0	0	logfile
✔	7YoY	33990	2024-02-13	2022-08-02	3.64	4.09	3.73	4.0	0.008	1.11	0.0	0.07	13.20	0.01	2.303	3.96	0.20	9.6	90.4	0.0	-3.78	0.66	0.80	3.17	4.0	0.006	1.50	2.0	0.05	15.53	0.01	1.920	12.47	4.90	7.0	92.8	0.2	-2.06	0.54	0.68	0.82	3.07	4517	593	5	0	0	0	0	logfile
✔	8ALY	15520	2024-02-19	2022-08-01	2.98	3.34	—	3.3	0.005	0.61	0.0	0.04	16.13	0.00	2.108	5.86	0.36	4.7	95.3	0.0	-1.52	0.75	0.86	3.87	3.3	0.007	0.65	1.0	0.04	17.32	0.00	1.892	5.90	2.03	4.1	95.9	0.0	-0.20	1.10	0.72	0.86	3.55	41300	5180	40	0	20	0	0	logfile
✔	7Yo3	33980	2024-02-14	2022-08-01	3.1	2.47	2.93	2.9	0.004	0.67	0.0	0.05	13.95	0.01	2.207	9.01	0.21	3.7	96.3	0.0	0.21	0.26	0.61	1.96	2.8	0.003	0.62	0.0	0.04	16.63	0.00	2.123	8.96	2.98	3.3	96.7	0.0	-0.08	0.86	0.31	0.74	2.65	8961	1144	3	0	3	0	0	logfile

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