Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Yo3	33980	2024-02-14	2022-08-01	3.1	2.47	2.93	2.9	0.004	0.67	0.0	0.05	13.95	0.01	2.207	9.01	0.21	3.7	96.3	0.0	0.21	0.26	0.61	1.96	2.8	0.003	0.62	0.0	0.04	16.63	0.00	2.123	8.96	2.98	3.3	96.7	0.0	-0.08	0.86	0.31	0.74	2.65	8961	1144	3	0	3	0	0	logfile
✔	7YoN	33984	2024-02-14	2022-08-01	2.95	2.24	—	3.0	0.003	0.50	0.0	0.04	13.65	0.00	2.155	3.67	0.00	2.7	97.3	0.0	0.20	0.78	0.83	3.97	3.0	0.004	0.57	0.0	0.04	15.59	0.00	2.158	4.32	1.89	2.1	97.9	0.0	1.25	0.36	0.78	0.85	3.11	9161	1166	8	0	0	2	0	logfile
✔	8DWH	27754	2024-02-13	2022-08-01	3.25	2.21	3.25	2.1	0.005	0.85	0.0	0.04	13.05	0.00	2.129	7.56	0.00	3.4	96.6	0.0	-0.94	0.73	0.78	4.11	2.1	0.004	0.58	0.0	0.04	15.30	0.00	2.110	7.24	2.80	3.8	96.2	0.0	0.42	0.96	0.73	0.80	3.64	6444	858	4	0	1	0	0	logfile
✔	8DWC	27752	2024-02-14	2022-08-01	2.87	2.13	2.85	2.0	0.008	0.65	0.0	0.05	12.54	0.00	2.095	7.28	0.00	4.8	95.2	0.0	-1.14	0.76	0.81	4.35	2.0	0.003	0.55	0.0	0.04	15.03	0.00	2.191	6.11	1.53	3.4	96.6	0.0	1.48	0.35	0.77	0.83	3.14	8298	1102	6	0	0	0	0	logfile
✔	8ALY	15520	2024-02-19	2022-08-01	2.98	3.34	—	3.3	0.005	0.61	0.0	0.04	16.13	0.00	2.108	5.86	0.36	4.7	95.3	0.0	-1.52	0.75	0.86	3.87	3.3	0.007	0.65	1.0	0.04	17.32	0.00	1.892	5.90	2.03	4.1	95.9	0.0	-0.20	1.10	0.72	0.86	3.55	41300	5180	40	0	20	0	0	logfile
✔	7Yoo	33985	2024-02-14	2022-08-01	3.11	2.28	—	3.2	0.002	0.45	0.0	0.04	13.30	0.00	2.153	3.82	0.00	1.7	98.3	0.0	-0.16	0.78	0.81	3.56	3.2	0.002	0.49	0.0	0.04	15.25	0.00	2.191	4.58	1.49	2.3	97.7	0.0	0.77	0.92	0.78	0.83	3.22	9188	1169	6	0	0	0	0	logfile
✔	8DWi	27755	2024-02-13	2022-08-01	3.4	4.06	3.58	4.1	0.003	0.63	0.0	0.04	13.02	0.01	2.258	7.44	0.00	5.0	95.0	0.0	0.29	0.28	0.33	-0.40	4.0	0.003	0.75	0.0	0.04	16.44	0.01	2.119	10.92	2.23	4.5	95.5	0.0	-0.30	1.77	0.47	0.72	2.55	3192	424	1	0	0	0	0	logfile
✔	7YoJ	33983	2024-02-15	2022-08-01	3.36	3.79	3.58	3.7	0.005	0.87	0.0	0.05	24.11	0.01	2.304	7.98	2.19	5.9	93.6	0.5	-2.03	0.77	0.77	1.75	3.6	0.004	0.68	0.0	0.04	24.00	0.00	2.019	16.54	3.28	5.8	94.1	0.1	-0.18	0.98	0.78	0.83	1.86	11545	867	4	216	0	0	0	logfile
✔	7YNM	33966	2024-02-13	2022-07-31	2.9	2.93	2.40	3.1	0.012	0.99	0.0	0.05	14.59	0.00	2.219	39.00	0.00	3.6	96.4	0.0	-2.80	0.45	0.70	4.24	3.1	0.004	0.69	0.0	0.05	16.87	0.00	2.126	11.44	5.23	9.1	90.9	0.0	-2.18	1.42	0.49	0.78	3.68	3528	488	12	0	8	0	0	logfile
✔	8DW6	27751	2024-02-19	2022-07-31	3.5	2.65	3.48	3.2	0.004	0.65	0.0	0.05	12.25	0.00	1.856	11.91	2.26	5.1	94.9	0.0	0.45	0.55	0.61	1.11	2.6	0.005	0.75	0.0	0.05	17.16	0.00	1.845	16.55	2.97	7.2	92.8	0.0	-0.81	1.49	0.57	0.67	1.51	23694	2914	15	17	11	0	0	logfile
✔	7YNP	33968	2024-02-13	2022-07-31	2.8	2.38	2.15	3.4	0.012	0.97	0.0	0.06	13.69	0.00	2.265	10.48	0.00	6.5	93.5	0.0	-3.88	0.39	0.78	4.28	3.5	0.006	0.61	0.0	0.05	15.54	0.00	2.173	7.81	5.04	6.8	93.2	0.0	-2.51	1.78	0.34	0.80	4.03	2568	366	8	0	2	0	0	logfile
✔	7YNR	33969	2024-02-13	2022-07-31	2.9	2.79	1.55	3.2	0.003	0.46	0.0	0.05	10.05	0.00	2.424	7.49	0.00	1.7	98.3	0.0	-3.30	0.41	0.87	6.76	3.2	0.004	0.48	0.0	0.05	12.92	0.00	2.401	4.42	0.00	4.2	95.8	0.0	-1.94	0.22	0.42	0.88	6.14	2526	366	6	0	0	0	0	logfile
✔	7YNT	33971	2024-02-13	2022-07-31	3.1	2.98	2.27	4.1	0.004	0.59	0.0	0.06	11.35	0.00	2.275	13.34	0.00	8.9	91.1	0.0	-5.55	0.42	0.70	4.17	4.1	0.004	0.67	0.0	0.06	13.80	0.00	2.244	11.90	1.25	14.9	85.1	0.0	-4.55	0.45	0.36	0.64	3.22	2364	348	6	0	0	0	0	logfile
✔	7YNo	33967	2024-02-13	2022-07-31	2.8	2.92	2.23	3.1	0.008	0.79	0.0	0.05	12.19	0.00	2.252	22.12	0.00	7.3	92.7	0.0	-3.47	0.41	0.77	5.69	3.1	0.003	0.67	0.0	0.05	14.57	0.00	2.263	8.01	1.94	2.5	97.5	0.0	-2.04	0.36	0.42	0.79	4.68	2562	366	8	0	2	0	0	logfile
✔	7YNi	33962	2024-02-13	2022-07-31	3.26	3.56	3.00	3.6	0.004	0.66	0.0	0.04	10.92	0.01	2.206	19.26	0.00	5.0	94.5	0.5	0.78	0.44	0.69	1.96	3.6	0.003	0.64	0.0	0.04	13.68	0.01	2.270	12.15	2.09	4.0	95.7	0.3	1.60	0.93	0.49	0.72	1.79	4387	594	3	0	1	0	0	logfile
✔	7YNJ	33963	2024-02-13	2022-07-31	3.33	3.63	3.37	3.7	0.004	0.68	0.0	0.04	12.78	0.01	2.249	13.26	0.00	3.8	96.2	0.0	1.41	0.55	0.72	1.45	3.7	0.003	0.66	0.0	0.04	15.13	0.00	2.188	14.07	2.83	5.0	95.0	0.0	1.26	0.40	0.53	0.74	1.33	4371	592	3	0	1	0	0	logfile
✔	7YNS	33970	2024-02-13	2022-07-31	3.0	2.79	2.25	3.1	0.009	0.66	0.0	0.06	11.51	0.00	2.233	10.18	0.00	5.1	94.9	0.0	-3.28	0.51	0.87	6.08	3.1	0.006	0.63	0.0	0.05	14.07	0.00	2.219	6.72	2.71	4.8	95.2	0.0	-2.09	0.90	0.49	0.88	4.99	2526	366	6	0	0	0	0	logfile
✔	7YN9	33955	2024-02-15	2022-07-30	3.53	3.69	3.50	3.6	0.007	0.83	0.0	0.05	16.33	0.01	2.151	9.81	0.38	15.4	84.4	0.2	-5.33	0.81	0.86	2.74	3.6	0.005	0.70	0.0	0.05	17.46	0.01	2.125	9.65	2.57	12.1	87.7	0.2	-3.23	0.36	0.80	0.86	2.42	13068	1514	2	38	0	0	0	logfile
✔	8AKN	15488	2024-02-25	2022-07-30	2.3	1.94	2.20	2.2	0.013	1.78	0.0	0.17	22.66	0.02	1.528	3.25	2.19	5.9	93.2	0.9	-3.31	0.61	0.80	5.18	2.1	0.006	0.83	0.0	0.04	22.94	0.01	1.754	6.96	3.95	2.9	97.0	0.1	-0.18	1.19	0.72	0.85	4.94	146513	5960	103	4552	309	1754	0	logfile
✔	7YNA	33956	2024-02-16	2022-07-30	3.64	3.83	3.70	3.7	0.007	0.73	0.0	0.05	16.96	0.01	2.143	10.32	0.60	16.1	83.8	0.1	-4.75	0.84	0.88	2.34	3.7	0.002	0.58	0.0	0.04	17.60	0.00	2.143	7.07	1.71	10.2	89.8	0.0	-2.04	0.38	0.84	0.86	2.07	13784	1536	3	63	0	0	0	logfile

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