Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DQL	27656	2024-02-13	2022-07-19	3.0	2.95	2.90	2.9	0.002	0.47	0.0	0.04	14.89	0.00	2.309	5.10	0.00	3.6	96.4	0.0	2.01	0.74	0.81	1.75	2.9	0.003	0.58	0.0	0.04	16.65	0.00	2.302	5.25	2.74	4.5	95.5	0.0	1.70	3.33	0.75	0.84	1.98	6402	771	3	0	0	0	0	logfile
✔	8AFX	15411	2024-02-13	2022-07-18	4.8	5.07	4.58	5.0	0.005	0.90	0.0	0.05	16.08	0.01	2.159	17.10	1.05	6.1	93.9	0.0	-0.47	0.60	0.65	—	5.0	0.003	0.72	0.0	0.05	12.19	0.00	1.973	12.92	0.00	5.1	94.9	0.0	-0.84	0.59	0.74	0.80	—	2498	321	1	0	0	0	0	logfile
✔	7YiX	33865	2024-02-15	2022-07-18	2.96	3.52	3.10	3.4	0.003	0.51	0.0	0.04	13.44	0.00	2.001	3.35	0.00	3.6	96.4	0.0	-0.34	0.63	0.78	3.94	3.4	0.003	0.53	0.0	0.04	15.47	0.00	2.013	4.41	1.97	3.8	96.2	0.0	-0.28	0.29	0.64	0.80	3.68	11080	1416	10	0	20	0	0	logfile
✔	7YiY	33866	2024-02-14	2022-07-18	2.7	2.84	2.66	2.8	0.008	1.00	0.0	0.06	16.20	0.01	2.205	6.16	4.77	5.2	94.2	0.6	-1.48	0.71	0.87	3.70	2.8	0.003	0.61	0.0	0.05	16.67	0.01	2.221	3.13	2.03	4.0	96.0	0.0	0.69	1.58	0.71	0.88	2.95	9257	1164	7	0	2	0	0	logfile
✔	8DPZ	27644	2024-02-13	2022-07-18	3.38	3.59	2.04	3.5	0.004	0.77	0.0	0.05	13.01	0.01	2.363	1.84	0.00	3.6	96.4	0.0	-2.09	0.74	0.80	3.86	3.5	0.003	0.64	0.0	0.04	14.86	0.00	2.121	7.53	3.61	4.9	95.1	0.0	-1.38	1.14	0.75	0.83	3.55	3326	420	4	0	2	0	0	logfile
✔	8AFM	15402	2024-02-13	2022-07-18	4.8	3.13	4.72	3.9	0.004	0.74	0.0	0.04	15.27	0.00	2.153	18.43	0.25	8.2	91.8	0.0	-3.48	0.46	0.51	—	3.0	0.003	0.73	0.0	0.04	15.59	0.00	2.101	13.44	0.00	4.0	96.0	0.0	-0.87	2.12	0.48	0.56	—	7842	1010	12	0	0	0	0	logfile
✔	8AFH	15398	2024-02-15	2022-07-18	3.9	2.50	3.75	3.1	0.006	0.70	0.0	0.04	14.17	0.00	2.160	15.04	0.00	4.9	95.1	0.0	-1.29	0.61	0.62	1.09	2.1	0.003	0.62	0.0	0.04	17.25	0.00	2.184	11.52	3.87	3.6	96.4	0.0	1.69	1.60	0.63	0.66	0.51	13570	1760	20	0	0	0	0	logfile
✔	8AFL	15401	2024-02-13	2022-07-18	4.4	3.03	4.24	2.2	0.004	0.74	0.0	0.04	15.27	0.00	2.153	18.68	0.25	8.4	91.6	0.0	-3.48	0.59	0.59	—	2.1	0.004	0.73	0.0	0.04	15.42	0.00	2.158	16.25	0.00	6.5	93.5	0.0	-1.48	0.80	0.59	0.59	—	3921	505	6	0	0	0	0	logfile
✔	7YiU	33864	2024-02-14	2022-07-18	2.9	3.02	2.83	3.0	0.007	1.08	1.0	0.07	19.63	0.01	1.932	14.64	16.13	6.5	92.3	1.2	-4.83	0.69	0.87	2.38	3.0	0.002	0.62	0.0	0.04	17.70	0.00	2.138	4.77	2.13	4.7	95.3	0.0	-0.39	1.18	0.69	0.88	2.63	9285	1166	7	0	4	0	0	logfile
✔	8DPS	27641	2024-02-15	2022-07-17	3.47	3.80	3.59	3.8	0.008	1.40	4.0	0.08	14.65	0.01	2.063	19.50	0.52	5.7	94.2	0.2	-0.57	0.68	0.72	1.72	3.8	0.003	0.75	0.0	0.04	15.28	0.00	2.140	12.66	2.78	3.5	96.5	0.0	0.14	0.49	0.69	0.74	1.18	10610	1324	12	0	14	0	0	logfile
✔	8DPT	27642	2024-02-16	2022-07-17	4.0	4.13	3.96	4.1	0.004	1.20	2.0	0.06	14.57	0.01	2.093	16.97	0.41	5.5	93.9	0.6	-0.83	0.64	0.68	—	4.1	0.004	0.78	0.0	0.04	15.31	0.01	2.143	12.36	2.66	4.0	96.0	0.0	0.28	1.45	0.69	0.74	—	13550	1714	12	0	14	0	0	logfile
✔	7YiM	33861	2024-02-13	2022-07-17	2.6	2.93	2.77	2.9	0.013	1.14	0.0	0.07	15.89	0.01	2.272	6.72	0.78	4.9	95.1	0.0	-4.17	0.67	0.68	1.25	2.9	0.003	0.63	0.0	0.04	17.66	0.00	2.234	8.89	1.55	2.9	97.1	0.0	1.30	1.24	0.64	0.66	1.37	4657	592	1	0	0	0	0	logfile
✔	8AFE	15395	2024-02-13	2022-07-17	3.3	2.35	3.31	2.0	0.006	0.70	0.0	0.04	14.17	0.00	2.161	14.08	0.00	4.9	95.1	0.0	-1.30	0.59	0.64	1.83	2.0	0.005	0.62	0.0	0.04	16.24	0.00	2.218	12.00	3.44	4.1	95.9	0.0	0.68	0.37	0.62	0.69	1.07	6785	880	10	0	0	0	0	logfile
✔	7YiE	33856	2024-02-18	2022-07-16	3.4	3.73	3.51	3.7	0.003	0.55	0.0	0.04	14.09	0.00	2.239	6.57	0.00	6.8	92.7	0.5	-0.45	0.66	0.76	2.38	3.7	0.003	0.53	0.0	0.04	15.84	0.00	2.231	6.31	1.81	7.4	92.3	0.3	0.23	0.36	0.65	0.84	1.99	21326	2640	8	0	6	8	0	logfile
✔	8AFA	15393	2024-02-14	2022-07-16	3.16	3.52	3.20	3.5	0.003	0.48	0.0	0.04	14.99	0.00	2.223	6.23	0.53	1.8	98.2	0.0	0.26	0.63	0.83	2.67	3.5	0.003	0.51	0.0	0.04	15.34	0.00	2.211	8.76	2.32	1.8	98.2	0.0	2.70	0.89	0.61	0.83	2.02	9008	1208	6	0	0	0	0	logfile
✔	7YiF	33857	2024-02-18	2022-07-16	3.5	3.75	3.52	3.7	0.002	0.58	0.0	0.04	14.02	0.00	2.259	6.69	0.00	7.5	92.4	0.2	-1.85	0.68	0.80	2.49	3.7	0.003	0.55	0.0	0.04	15.91	0.00	2.220	6.27	1.43	7.3	92.5	0.2	-0.88	0.37	0.67	0.84	2.40	21322	2640	8	0	6	4	0	logfile
✔	7YiG	33858	2024-02-18	2022-07-16	3.6	3.86	3.62	3.8	0.003	0.57	0.0	0.04	14.21	0.00	2.152	7.15	0.00	7.8	91.9	0.3	-2.00	0.67	0.80	2.11	3.8	0.003	0.56	0.0	0.04	15.92	0.00	2.206	6.90	1.76	8.6	91.2	0.2	-1.00	0.38	0.68	0.80	2.17	21320	2640	8	0	4	4	0	logfile
✔	7YiJ	33860	2024-02-18	2022-07-16	3.8	4.24	3.93	4.1	0.004	0.92	0.0	0.05	14.45	0.01	2.135	19.50	0.00	13.3	85.3	1.4	-2.71	0.57	0.71	1.54	4.1	0.006	0.91	0.0	0.05	17.42	0.01	2.189	21.04	2.94	16.5	82.6	0.9	-2.55	1.52	0.58	0.72	1.61	21313	2640	5	0	1	0	0	logfile
✔	7YiD	33855	2024-02-18	2022-07-16	3.4	3.71	3.49	3.7	0.003	0.56	0.0	0.04	13.96	0.00	2.216	7.32	0.00	6.6	93.1	0.3	-0.75	0.65	0.81	3.12	3.7	0.002	0.50	0.0	0.04	15.58	0.00	2.211	6.41	1.76	6.1	93.6	0.3	-0.05	0.28	0.66	0.84	2.51	21326	2640	8	0	6	8	0	logfile
✔	7YiH	33859	2024-02-18	2022-07-16	3.5	3.85	3.58	3.8	0.004	0.78	0.0	0.05	14.23	0.01	2.066	16.72	0.00	13.9	85.0	1.1	-2.65	0.61	0.68	1.55	3.8	0.003	0.70	0.0	0.04	16.33	0.00	2.048	14.31	2.06	13.0	86.0	0.9	-1.86	0.93	0.62	0.71	1.49	21321	2640	8	0	5	4	0	logfile

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