Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DPM	27638	2024-02-18	2022-07-15	3.0	3.51	2.99	3.3	0.002	0.50	0.0	0.04	10.75	0.00	2.221	6.59	0.62	2.7	97.3	0.0	0.12	0.81	0.80	3.81	3.2	0.004	0.73	0.0	0.04	14.38	0.00	2.181	12.34	2.58	4.0	96.0	0.0	-0.24	1.26	0.84	0.85	3.46	16992	2169	21	0	21	0	0	logfile
✔	8DPG	27634	2024-02-14	2022-07-15	3.6	2.36	3.57	2.2	0.002	0.49	0.0	0.04	9.69	0.00	2.151	4.40	0.61	0.9	99.1	0.0	1.82	0.73	0.69	1.78	2.2	0.004	0.60	0.0	0.04	13.63	0.00	2.122	6.48	2.32	3.1	96.9	0.0	0.67	1.11	0.76	0.73	1.89	8162	1093	6	0	2	0	0	logfile
✔	7Yi8	33853	2024-02-13	2022-07-15	2.7	2.97	2.76	2.9	0.003	0.61	0.0	0.04	14.73	0.00	2.179	9.92	0.00	4.0	96.0	0.0	-0.52	0.69	0.74	2.24	3.0	0.003	0.59	0.0	0.04	17.83	0.00	2.186	11.82	3.29	3.7	96.3	0.0	-0.86	0.95	0.69	0.78	1.92	5225	635	5	0	0	0	0	logfile
✔	7Yi9	33854	2024-02-13	2022-07-15	2.6	2.91	2.69	2.9	0.004	0.65	0.0	0.40	14.61	0.00	2.115	9.72	0.00	5.0	95.0	0.0	-0.81	0.63	0.75	3.34	2.9	0.003	0.57	0.0	0.04	17.61	0.00	2.121	9.82	2.95	4.0	96.0	0.0	-0.50	0.96	0.64	0.78	3.27	5226	634	5	0	1	0	0	logfile
✔	8DPF	27633	2024-02-14	2022-07-15	2.84	2.18	2.90	2.0	0.004	0.77	0.0	0.07	11.10	0.00	2.093	3.46	0.12	1.8	98.2	0.0	1.40	0.78	0.77	4.38	2.0	0.003	0.63	0.0	0.04	14.66	0.00	2.169	4.53	1.59	2.7	97.3	0.0	0.66	1.01	0.80	0.80	3.07	8160	1093	6	0	2	0	0	logfile
✔	8DPL	27637	2024-02-18	2022-07-15	2.53	3.55	2.56	3.0	0.002	0.48	0.0	0.04	9.41	0.00	2.277	3.90	0.00	2.5	97.5	0.0	1.13	0.90	0.87	4.07	3.1	0.004	0.75	0.0	0.04	13.61	0.01	2.130	8.94	2.31	3.3	96.7	0.0	0.48	1.58	0.89	0.88	4.09	16872	2163	21	0	21	0	0	logfile
✔	8DPi	27636	2024-02-14	2022-07-15	3.4	2.28	3.42	2.1	0.002	0.55	0.0	0.06	10.82	0.00	2.211	4.16	0.98	1.3	98.6	0.1	1.79	0.73	0.68	1.99	2.1	0.003	0.64	0.0	0.04	14.04	0.00	2.070	7.43	2.44	3.1	96.9	0.0	0.63	0.59	0.75	0.73	2.18	8150	1093	6	0	2	0	0	logfile
✔	8DPH	27635	2024-02-14	2022-07-15	3.2	2.17	3.15	2.0	0.005	0.59	0.0	0.05	10.99	0.00	2.162	2.82	0.73	1.4	98.6	0.0	1.66	0.76	0.73	2.48	2.0	0.005	0.68	0.0	0.05	15.46	0.00	2.178	6.08	3.79	3.8	96.2	0.0	0.65	1.06	0.78	0.78	2.45	8182	1093	6	0	3	0	0	logfile
✔	7YHS	33837	2024-02-19	2022-07-14	3.37	2.19	3.33	1.9	0.005	0.91	0.0	0.05	20.46	0.01	2.129	6.19	7.08	8.0	92.0	0.1	-4.27	0.70	0.65	1.63	1.9	0.004	0.76	2.0	0.04	20.49	0.00	2.100	11.45	5.61	8.4	91.6	0.0	-1.38	0.40	0.72	0.68	1.15	24596	2949	13	109	0	0	0	logfile
✔	8DoU	27623	2024-02-15	2022-07-14	3.54	3.80	3.52	3.8	0.003	0.63	0.0	0.04	14.70	0.00	2.233	7.01	0.34	4.7	95.3	0.0	0.61	0.70	0.76	1.40	3.8	0.003	0.65	0.0	0.04	16.29	0.00	2.227	8.14	2.84	5.4	94.6	0.0	-0.21	0.57	0.74	0.81	1.69	10666	1300	6	0	2	0	0	logfile
✔	8DP1	27628	2024-02-19	2022-07-14	3.46	4.08	3.46	3.5	0.014	1.85	9.0	0.12	15.88	0.02	2.519	0.08	1.61	4.4	95.0	0.6	-0.92	0.84	0.83	3.01	3.5	0.004	0.65	0.0	0.04	14.12	0.00	2.119	7.54	0.97	3.2	96.8	0.0	-0.06	1.25	0.85	0.87	2.21	25000	3045	33	0	95	0	0	logfile
✔	8DoW	27624	2024-02-19	2022-07-14	3.69	4.37	3.72	3.7	0.014	1.91	15.0	0.13	15.27	0.02	2.498	0.14	1.03	7.6	91.0	1.3	-1.25	0.84	0.82	2.02	3.6	0.002	0.66	0.0	0.04	14.37	0.00	2.121	8.77	0.85	5.3	94.4	0.3	-0.27	0.56	0.84	0.83	1.80	25053	3108	31	0	69	0	0	logfile
✔	7Yi2	33849	2024-02-15	2022-07-14	3.4	2.75	3.37	2.7	0.003	0.59	0.0	0.04	18.25	0.01	2.062	9.71	0.23	6.9	93.1	0.0	-0.99	0.75	0.77	2.10	2.7	0.002	0.54	0.0	0.04	19.03	0.00	2.077	9.55	3.13	6.2	93.8	0.0	-0.07	0.31	0.75	0.76	1.80	12140	1397	9	33	5	0	0	logfile
✔	7Yi0	33845	2024-02-15	2022-07-14	3.2	3.31	3.15	3.3	0.003	0.57	0.0	0.04	15.67	0.00	2.105	8.46	0.93	5.7	94.3	0.0	-0.27	0.62	0.62	1.43	3.3	0.002	0.57	0.0	0.04	17.42	0.00	2.110	9.85	2.39	5.4	94.6	0.0	0.81	2.09	0.68	0.75	1.64	13430	1638	9	0	7	0	0	logfile
✔	8DP5	27630	2024-02-17	2022-07-14	3.1	3.61	3.19	3.5	0.013	1.78	2.0	0.09	12.28	0.02	2.317	0.79	0.00	1.1	98.9	0.0	-0.51	0.80	0.85	4.09	3.5	0.003	0.51	0.0	0.03	14.24	0.00	2.062	2.87	0.22	1.8	98.2	0.0	2.78	2.87	0.74	0.82	2.67	17772	1145	6	0	0	0	8908	logfile
✔	8AEX	15388	2024-02-13	2022-07-14	2.76	2.87	2.67	2.8	0.009	1.16	0.0	0.06	16.57	0.00	2.313	12.81	3.19	8.5	91.5	0.0	-3.01	0.49	0.85	5.31	2.8	0.008	0.87	0.0	0.06	17.79	0.00	2.269	11.67	4.68	10.0	90.0	0.0	-2.49	0.36	0.49	0.87	4.73	4665	680	10	0	0	0	0	logfile
✔	7YHP	33835	2024-02-13	2022-07-14	3.1	3.03	3.01	3.1	0.008	0.55	0.0	0.04	19.25	0.00	2.216	6.19	1.81	4.1	95.9	0.0	0.44	0.68	0.76	3.14	3.1	0.004	0.55	0.0	0.04	21.67	0.00	2.232	9.49	1.81	4.1	95.9	0.0	0.04	0.74	0.68	0.79	3.55	3815	374	4	38	1	0	0	logfile
✔	7YHo	33832	2024-02-13	2022-07-14	3.3	3.49	3.34	3.3	0.005	0.74	1.0	0.07	23.57	0.00	2.273	11.12	8.78	4.0	96.0	0.0	0.44	0.74	0.72	1.30	3.3	0.005	0.65	0.0	0.04	23.78	0.00	2.197	13.57	4.70	4.9	95.1	0.0	-0.52	0.54	0.75	0.75	1.36	3923	361	4	49	1	0	0	logfile
✔	8DP0	27627	2024-02-14	2022-07-14	2.96	3.56	—	3.4	0.002	0.50	0.0	0.04	13.31	0.00	2.213	5.91	0.00	2.5	97.5	0.0	1.09	0.77	0.70	0.99	3.4	0.003	0.58	0.0	0.04	15.77	0.00	2.139	6.59	1.74	2.8	97.2	0.0	1.20	0.97	0.83	0.87	2.05	8894	1104	2	0	0	0	0	logfile
✔	7Yi4	33851	2024-02-19	2022-07-14	3.96	8.09	3.85	2.7	0.004	0.61	0.0	0.04	23.49	0.00	2.041	12.68	0.10	3.9	96.1	0.0	1.12	0.85	0.82	0.23	2.7	0.004	0.59	0.0	0.04	23.83	0.00	2.059	15.70	1.39	4.0	96.0	0.0	1.42	1.60	0.85	0.83	0.23	25351	2359	18	302	5	0	0	logfile

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