Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Yi1	33848	2024-02-16	2022-07-14	2.8	2.41	2.78	2.6	0.003	0.57	0.0	0.03	26.98	0.00	2.155	7.30	0.37	1.9	98.1	0.0	0.11	0.81	0.84	2.94	2.6	0.003	0.58	0.0	0.04	27.73	0.00	2.182	7.41	1.98	2.4	97.6	0.0	1.57	0.17	0.81	0.86	2.63	13926	967	12	302	0	0	0	logfile
✔	8DoU	27623	2024-02-15	2022-07-14	3.54	3.80	3.52	3.8	0.003	0.63	0.0	0.04	14.70	0.00	2.233	7.01	0.34	4.7	95.3	0.0	0.61	0.70	0.76	1.40	3.8	0.003	0.65	0.0	0.04	16.29	0.00	2.227	8.14	2.84	5.4	94.6	0.0	-0.21	0.57	0.74	0.81	1.69	10666	1300	6	0	2	0	0	logfile
✔	7YHS	33837	2024-02-19	2022-07-14	3.37	2.19	3.33	1.9	0.005	0.91	0.0	0.05	20.46	0.01	2.129	6.19	7.08	8.0	92.0	0.1	-4.27	0.70	0.65	1.63	1.9	0.004	0.76	2.0	0.04	20.49	0.00	2.100	11.45	5.61	8.4	91.6	0.0	-1.38	0.40	0.72	0.68	1.15	24596	2949	13	109	0	0	0	logfile
✔	8DoK	27596	2024-02-19	2022-07-13	3.2	3.37	3.24	3.4	0.006	0.92	7.0	0.07	17.80	0.01	2.136	12.34	0.71	3.8	96.1	0.2	-0.58	0.65	0.83	3.01	3.4	0.003	0.59	0.0	0.05	14.37	0.00	2.152	9.45	2.06	4.0	96.0	0.0	-0.30	0.90	0.67	0.85	2.52	25844	3091	46	0	122	0	0	logfile
✔	7YH7	33822	2024-02-20	2022-07-13	3.3	3.70	3.30	3.4	0.003	0.51	0.0	0.04	13.55	0.00	2.190	4.90	0.03	4.2	95.8	0.0	0.00	0.73	0.69	2.39	3.5	0.004	0.57	0.0	0.04	14.49	0.00	2.136	7.60	1.43	5.0	95.0	0.0	-0.02	0.44	0.79	0.87	2.23	28318	3574	20	0	43	0	0	logfile
✔	7YHK	33831	2024-02-16	2022-07-13	3.14	3.38	3.17	3.4	0.007	0.99	0.0	0.06	14.13	0.01	2.283	5.30	0.76	5.0	94.8	0.2	-3.95	0.54	0.74	4.42	3.4	0.005	0.85	0.0	0.04	15.47	0.01	1.967	8.00	2.16	3.6	96.3	0.1	-1.40	0.42	0.70	0.88	4.20	14502	1812	15	0	18	0	0	logfile
✔	8Do4	27590	2024-02-17	2022-07-12	3.2	3.38	3.21	3.5	0.005	0.81	0.0	0.05	16.40	0.00	2.056	12.09	1.54	3.4	96.6	0.0	-0.40	0.69	0.68	1.37	3.5	0.003	0.66	0.0	0.05	17.01	0.00	2.142	12.07	3.64	3.5	96.5	0.0	-0.31	0.73	0.71	0.72	1.36	20163	2625	6	0	0	0	0	logfile
✔	8DNX	27583	2024-02-13	2022-07-12	2.98	3.62	2.98	3.5	0.008	1.00	0.0	0.04	12.30	0.00	2.185	6.67	0.44	2.6	97.4	0.0	1.89	0.56	0.79	2.16	3.5	0.002	0.44	0.0	0.04	15.25	0.00	2.031	29.90	2.41	2.8	97.2	0.0	4.08	0.68	0.50	0.77	2.44	4291	549	4	0	1	0	20	logfile
✔	7YH6	33820	2024-02-13	2022-07-12	3.4	3.90	3.35	3.7	0.005	0.64	0.0	0.05	13.19	0.00	2.161	8.14	0.00	7.1	92.7	0.2	-0.87	0.66	0.86	3.92	3.7	0.003	0.66	0.0	0.04	14.64	0.00	2.205	8.29	1.94	6.1	93.9	0.0	-0.81	0.30	0.68	0.87	2.95	3343	430	3	0	1	0	0	logfile
✔	8DNW	27582	2024-02-13	2022-07-12	3.4	3.74	3.38	3.7	0.003	0.51	0.0	0.04	12.46	0.00	1.976	5.57	0.00	1.4	98.6	0.0	2.85	0.58	0.79	1.72	3.7	0.003	0.57	0.0	0.04	14.17	0.00	2.180	6.42	1.15	1.6	98.4	0.0	3.26	1.09	0.55	0.80	1.50	4060	528	3	0	0	0	0	logfile
✔	8Do6	27593	2024-02-15	2022-07-12	3.1	3.31	3.16	3.3	0.005	0.68	0.0	0.04	18.00	0.00	2.146	16.58	0.62	6.3	93.2	0.4	-1.21	0.69	0.77	1.74	3.2	0.006	0.73	0.0	0.05	18.91	0.00	2.050	20.22	2.73	8.7	90.9	0.4	-1.24	0.42	0.69	0.78	1.66	12980	1450	9	61	0	0	0	logfile
✔	8DNY	27584	2024-02-13	2022-07-12	2.85	3.15	2.84	3.1	0.009	0.68	0.0	0.04	13.55	0.01	2.287	8.04	0.00	2.2	97.8	0.0	2.03	0.61	0.81	3.14	3.1	0.002	0.43	0.0	0.04	15.34	0.00	2.103	22.32	1.09	3.3	96.7	0.0	3.04	1.12	0.62	0.84	2.66	4336	558	4	0	1	0	5	logfile
✔	8DNV	27581	2024-02-13	2022-07-12	3.03	3.41	3.04	3.4	0.004	0.59	0.0	0.04	11.81	0.01	2.276	7.53	0.00	2.5	97.5	0.0	1.82	0.49	0.76	3.80	3.3	0.003	0.52	0.0	0.04	13.82	0.00	2.282	5.53	0.67	2.5	97.5	0.0	2.50	0.35	0.56	0.82	3.16	4157	535	3	0	0	0	0	logfile
✔	8Do2	27588	2024-02-13	2022-07-12	2.95	3.24	2.95	3.2	0.005	1.14	0.0	0.04	15.15	0.00	2.254	7.21	0.22	1.7	98.3	0.0	2.17	0.58	0.80	2.71	3.2	0.004	0.79	0.0	0.04	17.09	0.00	2.233	7.68	1.33	2.3	97.7	0.0	2.34	0.33	0.59	0.83	2.17	4226	541	3	0	1	0	0	logfile
✔	8AE1	15378	2024-02-18	2022-07-12	3.25	3.42	3.19	3.3	0.002	0.47	0.0	0.04	12.79	0.00	2.165	3.58	0.00	2.7	97.3	0.0	-1.01	0.77	0.87	4.39	3.3	0.003	0.53	0.0	0.04	14.00	0.00	2.186	4.11	1.14	3.2	96.8	0.0	-0.31	0.27	0.77	0.88	3.64	21504	2859	6	0	18	0	0	logfile
✔	7YGD	33816	2024-02-14	2022-07-11	3.41	4.13	3.42	3.3	0.002	0.49	0.0	0.03	24.63	0.00	2.100	14.25	0.00	0.0	0.0	0.0	—	0.90	0.81	—	3.3	0.007	0.75	0.0	0.04	25.30	0.01	1.824	32.50	0.00	0.0	0.0	0.0	—	1.50	0.91	0.88	—	8313	0	3	389	6	0	0	logfile
✔	8DNH	27572	2024-02-15	2022-07-11	2.99	3.18	3.05	3.2	0.006	0.88	0.0	0.06	17.00	0.01	2.150	8.51	0.16	3.8	96.2	0.0	0.38	0.58	0.74	1.96	3.1	0.003	0.62	0.0	0.04	17.88	0.00	1.917	5.69	2.53	3.8	96.2	0.0	-0.03	1.13	0.68	0.83	2.10	11796	1496	8	0	12	0	0	logfile
✔	8DNM	27574	2024-02-16	2022-07-11	2.76	3.58	2.88	3.4	0.006	0.85	4.0	0.05	12.93	0.01	2.217	8.35	0.86	3.6	96.4	0.0	-1.12	0.83	0.80	3.99	3.4	0.004	0.57	0.0	0.04	14.76	0.00	2.230	6.43	0.80	2.9	97.1	0.0	0.69	0.56	0.83	0.87	3.28	14880	1932	4	0	0	0	0	logfile
✔	7YGC	33815	2024-02-14	2022-07-11	2.65	3.28	2.77	2.9	0.007	0.50	0.0	0.03	24.40	0.00	1.778	12.79	0.00	0.0	0.0	0.0	—	0.90	0.83	—	2.9	0.004	0.55	0.0	0.03	24.24	0.00	1.926	14.01	0.00	0.0	0.0	0.0	—	1.47	0.92	0.90	—	8690	0	3	407	6	0	0	logfile
✔	7YG9	33812	2024-02-14	2022-07-11	2.68	3.47	2.76	2.8	0.005	0.51	0.0	0.03	24.67	0.00	1.804	13.88	0.00	0.0	0.0	0.0	—	0.86	0.81	—	2.8	0.006	0.62	0.0	0.04	24.38	0.00	1.873	17.58	0.00	0.0	0.0	0.0	—	0.39	0.92	0.92	—	8630	0	3	404	8	0	0	logfile

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