Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YG4	33807	2024-02-13	2022-07-11	3.1	3.38	3.15	3.3	0.003	0.58	0.0	0.04	15.98	0.00	2.147	7.09	0.00	3.3	96.7	0.0	0.41	0.75	0.81	1.84	3.3	0.003	0.59	0.0	0.04	17.11	0.00	2.212	6.37	1.53	3.6	96.4	0.0	1.98	0.34	0.76	0.82	1.22	7510	953	3	0	0	0	0	logfile
✔	7YGC	33815	2024-02-14	2022-07-11	2.65	3.28	2.77	2.9	0.007	0.50	0.0	0.03	24.40	0.00	1.778	12.79	0.00	0.0	0.0	0.0	—	0.90	0.83	—	2.9	0.004	0.55	0.0	0.03	24.24	0.00	1.926	14.01	0.00	0.0	0.0	0.0	—	1.47	0.92	0.90	—	8690	0	3	407	6	0	0	logfile
✔	8DNH	27572	2024-02-15	2022-07-11	2.99	3.18	3.05	3.2	0.006	0.88	0.0	0.06	17.00	0.01	2.150	8.51	0.16	3.8	96.2	0.0	0.38	0.58	0.74	1.96	3.1	0.003	0.62	0.0	0.04	17.88	0.00	1.917	5.69	2.53	3.8	96.2	0.0	-0.03	1.13	0.68	0.83	2.10	11796	1496	8	0	12	0	0	logfile
✔	7YGD	33816	2024-02-14	2022-07-11	3.41	4.13	3.42	3.3	0.002	0.49	0.0	0.03	24.63	0.00	2.100	14.25	0.00	0.0	0.0	0.0	—	0.90	0.81	—	3.3	0.007	0.75	0.0	0.04	25.30	0.01	1.824	32.50	0.00	0.0	0.0	0.0	—	1.50	0.91	0.88	—	8313	0	3	389	6	0	0	logfile
✔	8DNo	27575	2024-02-16	2022-07-11	3.4	3.13	3.46	3.2	0.013	1.45	0.0	0.06	13.09	0.01	2.298	40.43	4.71	10.4	87.0	2.6	-4.22	0.63	0.74	1.54	3.2	0.004	0.72	0.0	0.05	16.83	0.00	2.131	15.50	4.09	4.2	95.8	0.0	-0.25	1.72	0.61	0.77	1.14	15160	1972	4	0	0	0	0	logfile
✔	7YG5	33808	2024-02-18	2022-07-11	3.0	3.31	3.22	3.3	0.015	1.09	2.0	0.07	17.21	0.01	2.195	16.07	0.56	10.9	88.8	0.3	-2.73	0.65	0.82	2.84	3.3	0.003	0.67	0.0	0.04	16.52	0.00	2.034	9.76	1.82	7.7	92.2	0.0	-0.54	1.13	0.62	0.81	2.46	20308	2436	8	0	37	0	0	logfile
✔	8DNP	27576	2024-02-22	2022-07-11	2.69	2.56	2.88	2.7	0.010	1.16	0.0	0.08	12.98	0.00	1.768	10.47	1.31	2.3	97.7	0.0	0.44	0.76	0.82	4.00	2.7	0.004	0.90	4.0	0.04	19.08	0.00	1.858	12.18	2.15	1.6	98.4	0.0	5.72	0.66	0.73	0.83	3.82	33936	4128	48	0	24	0	0	logfile
✔	7YG9	33812	2024-02-14	2022-07-11	2.68	3.47	2.76	2.8	0.005	0.51	0.0	0.03	24.67	0.00	1.804	13.88	0.00	0.0	0.0	0.0	—	0.86	0.81	—	2.8	0.006	0.62	0.0	0.04	24.38	0.00	1.873	17.58	0.00	0.0	0.0	0.0	—	0.39	0.92	0.92	—	8630	0	3	404	8	0	0	logfile
✔	7YGN	33817	2024-02-13	2022-07-11	3.0	3.26	3.08	3.3	0.004	0.83	0.0	0.05	15.54	0.02	1.892	3.34	0.00	2.7	97.3	0.0	0.11	0.69	0.77	2.97	3.3	0.006	0.72	0.0	0.05	16.75	0.01	1.859	6.11	1.49	4.0	96.0	0.0	-0.02	0.56	0.65	0.81	3.17	6133	739	3	9	2	0	0	logfile
✔	8DNG	27566	2024-02-14	2022-07-11	3.0	3.19	3.01	3.2	0.004	0.61	0.0	0.05	15.29	0.00	2.029	11.14	2.15	3.2	96.8	0.0	0.46	0.53	0.67	2.03	3.2	0.005	0.96	1.0	0.05	16.28	0.00	1.743	8.81	3.35	2.6	97.4	0.0	-0.20	0.51	0.65	0.77	2.12	10218	1308	6	0	12	0	0	logfile
✔	8DNR	27577	2024-02-14	2022-07-11	2.8	3.02	2.87	3.0	0.003	0.52	0.0	0.05	15.27	0.00	1.992	5.07	1.47	2.4	97.5	0.1	0.42	0.66	0.84	3.88	3.0	0.002	0.46	0.0	0.04	15.39	0.00	2.190	4.05	2.08	2.6	97.4	0.0	1.01	0.22	0.68	0.85	3.72	10191	1314	6	0	12	0	0	logfile
✔	7YG6	33809	2024-02-13	2022-07-11	3.2	3.42	3.21	3.5	0.006	0.90	0.0	0.05	16.20	0.01	1.938	9.23	0.77	4.3	94.7	1.0	-0.86	0.59	0.63	1.61	3.5	0.004	0.67	0.0	0.04	16.91	0.01	1.926	11.98	3.09	4.7	95.0	0.3	-1.09	1.24	0.60	0.70	1.58	6025	727	3	9	2	0	0	logfile
✔	8DNS	27579	2024-02-14	2022-07-11	3.22	3.05	3.26	3.1	0.006	1.46	0.0	0.09	11.07	0.01	2.425	5.60	3.33	2.4	97.6	0.0	-0.08	0.66	0.78	2.68	3.1	0.004	0.64	0.0	0.05	14.89	0.00	2.121	11.10	2.50	2.4	97.6	0.0	0.03	1.61	0.68	0.82	3.68	10092	1332	4	0	0	0	0	logfile
✔	8ADS	15369	2024-02-13	2022-07-11	3.05	2.91	2.80	3.2	0.004	0.49	0.0	0.06	13.38	0.00	2.218	11.86	0.00	1.4	98.6	0.0	-3.19	0.48	0.79	5.21	3.2	0.005	0.65	0.0	0.05	16.29	0.00	2.125	11.86	4.62	2.5	97.5	0.0	-3.55	0.55	0.50	0.82	5.94	5170	750	10	0	0	0	0	logfile
✔	7YG8	33811	2024-02-14	2022-07-11	2.97	3.59	3.04	3.0	0.002	0.48	0.0	0.03	24.52	0.00	2.042	13.48	0.00	0.0	0.0	0.0	—	0.89	0.82	—	3.0	0.006	0.65	0.0	0.04	24.62	0.00	1.829	19.71	0.00	0.0	0.0	0.0	—	0.38	0.91	0.89	—	8440	0	3	395	5	0	0	logfile
✔	8DN9	27558	2024-02-16	2022-07-11	2.9	3.17	3.07	3.2	0.003	0.65	0.0	0.04	14.88	0.00	2.218	6.34	0.45	4.1	95.9	0.0	-0.18	0.79	0.84	2.93	3.2	0.004	0.59	0.0	0.04	16.51	0.00	2.241	4.73	0.86	3.7	96.3	0.0	0.78	0.40	0.81	0.86	3.20	121080	15840	60	0	0	0	0	logfile
✔	8DNE	27564	2024-02-14	2022-07-11	3.5	3.77	3.53	3.8	0.004	0.65	0.0	0.04	14.83	0.00	1.785	9.38	0.00	4.9	95.1	0.0	-0.37	0.71	0.78	2.45	3.8	0.002	0.59	0.0	0.04	16.54	0.00	1.923	9.38	2.41	4.1	95.9	0.0	-0.20	1.22	0.69	0.77	1.46	10281	1251	6	0	4	0	0	logfile
✔	7YGB	33814	2024-02-14	2022-07-11	2.62	3.15	2.70	2.9	0.007	0.52	0.0	0.03	24.24	0.00	2.079	13.50	0.00	0.0	0.0	0.0	—	0.88	0.84	—	2.9	0.007	0.64	0.0	0.04	23.99	0.00	1.834	13.50	0.00	0.0	0.0	0.0	—	0.87	0.92	0.92	—	8738	0	5	407	54	0	0	logfile
✔	8DNF	27565	2024-02-15	2022-07-11	3.38	3.71	3.49	3.9	0.004	0.69	0.0	0.04	15.96	0.01	2.266	4.74	0.79	2.8	97.2	0.0	-0.81	0.56	0.81	1.68	3.9	0.004	0.64	0.0	0.04	16.56	0.00	1.877	4.70	2.93	4.8	95.2	0.0	-1.03	1.07	0.66	0.88	1.78	11812	1496	8	0	12	0	0	logfile
✔	8DNA	27560	2024-02-16	2022-07-11	2.77	3.01	2.93	3.0	0.002	0.54	0.0	0.04	13.25	0.00	2.269	6.05	0.00	2.7	97.3	0.0	1.26	0.77	0.83	3.87	3.0	0.005	0.66	0.0	0.05	16.59	0.00	2.305	4.31	0.94	3.2	96.7	0.1	0.43	0.34	0.79	0.87	4.44	120420	15840	60	0	0	0	0	logfile

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