Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DN8	27556	2024-02-15	2022-07-10	3.7	4.03	3.79	4.0	0.003	0.61	0.0	0.04	13.76	0.00	2.157	9.82	0.00	6.0	94.0	0.0	-0.14	0.72	0.82	1.16	3.9	0.005	0.68	0.0	0.04	16.01	0.00	2.147	13.31	3.10	6.7	93.3	0.0	-0.18	0.58	0.72	0.83	1.08	10638	1300	6	0	2	0	0	logfile
✔	8DN5	27555	2024-02-16	2022-07-10	3.63	3.95	3.73	3.9	0.004	0.73	0.0	0.05	11.89	0.01	0.981	14.52	1.52	6.4	93.4	0.2	-0.87	0.67	0.83	2.14	3.9	0.003	0.65	0.0	0.04	14.68	0.00	2.176	9.33	3.38	6.0	93.8	0.2	-0.26	0.94	0.63	0.84	1.95	14081	1689	13	0	47	0	0	logfile
✔	8DN3	27553	2024-02-16	2022-07-10	3.55	3.91	3.65	3.9	0.003	0.56	0.0	0.05	11.89	0.01	2.181	12.00	1.97	3.9	96.0	0.1	0.56	0.61	0.81	2.45	3.9	0.002	0.58	0.0	0.04	13.94	0.00	2.218	9.19	2.56	3.9	96.1	0.0	0.65	0.92	0.61	0.82	1.87	14315	1699	10	0	61	0	0	logfile
✔	8DN4	27554	2024-02-16	2022-07-10	4.1	4.45	4.26	4.3	0.004	0.72	0.0	0.05	13.55	0.00	1.353	18.54	0.40	5.8	93.9	0.3	-0.28	0.63	0.81	—	4.3	0.003	0.71	0.0	0.05	13.35	0.00	2.067	16.12	0.07	6.7	93.1	0.2	-0.67	0.52	0.63	0.81	—	13817	1682	10	0	20	0	0	logfile
✔	8DN2	27552	2024-02-16	2022-07-10	3.9	4.27	4.08	4.3	0.003	0.65	0.0	0.05	12.21	0.01	1.224	14.88	2.83	5.9	94.0	0.1	0.00	0.62	0.81	2.07	4.3	0.004	0.75	0.0	0.05	14.63	0.00	2.072	13.44	4.93	6.3	93.7	0.0	-0.05	0.97	0.61	0.82	1.74	14102	1696	12	0	40	0	0	logfile
✔	7YFX	33800	2024-02-13	2022-07-09	3.4	3.66	3.48	3.6	0.006	0.79	0.0	0.05	17.05	0.01	1.969	7.14	0.45	2.4	97.6	0.0	-0.16	0.64	0.71	1.95	3.6	0.004	0.71	0.0	0.04	17.72	0.01	1.922	10.40	5.49	4.2	95.8	0.0	-0.38	0.68	0.68	0.78	2.04	6319	746	4	15	2	0	0	logfile
✔	7YG1	33804	2024-02-13	2022-07-09	3.77	4.01	3.78	3.9	0.005	1.15	1.0	0.06	14.00	0.01	2.230	42.79	1.33	14.0	86.0	0.0	-3.77	0.65	0.65	0.57	3.9	0.004	0.88	0.0	0.05	16.72	0.00	2.139	24.30	6.19	8.8	91.1	0.1	-1.76	1.43	0.67	0.68	0.13	6208	770	2	0	0	0	0	logfile
✔	7YG0	33803	2024-02-15	2022-07-09	3.75	4.38	3.91	6.5	0.005	0.93	1.0	0.05	14.36	0.00	2.222	25.32	1.19	8.0	92.0	0.0	-1.07	0.59	0.54	0.45	3.8	0.004	0.93	0.0	0.05	16.38	0.00	2.041	31.49	4.76	6.2	93.7	0.1	-0.83	2.20	0.67	0.75	0.41	13336	1708	2	0	0	0	0	logfile
✔	7YFY	33801	2024-02-13	2022-07-09	3.4	3.81	3.42	3.8	0.006	0.86	1.0	0.05	19.57	0.01	1.918	6.81	1.35	5.5	94.4	0.1	-1.34	0.70	0.69	2.33	3.8	0.004	0.74	0.0	0.04	20.11	0.01	1.905	10.75	4.80	6.3	93.7	0.0	-1.10	0.56	0.72	0.75	2.02	6770	734	4	41	2	0	0	logfile
✔	7YG2	33805	2024-02-18	2022-07-09	3.32	3.64	3.42	3.6	0.003	0.61	0.0	0.05	15.08	0.01	2.196	6.69	0.00	3.5	96.5	0.0	-0.43	0.68	0.68	1.12	3.6	0.004	0.64	0.0	0.05	15.83	0.00	2.149	14.00	2.92	3.9	96.1	0.0	-0.37	0.68	0.71	0.76	1.39	20783	2630	23	0	12	0	0	logfile
✔	7YFZ	33802	2024-02-17	2022-07-09	3.19	2.87	2.92	2.9	0.006	0.86	3.0	0.05	12.31	0.01	1.749	18.46	0.20	6.2	93.6	0.2	-0.92	0.62	0.79	3.45	2.9	0.003	0.57	1.0	0.04	14.53	0.00	1.866	12.22	0.94	4.8	95.2	0.1	0.60	1.25	0.61	0.81	3.04	128850	8814	42	0	0	0	61470	logfile
✔	8DMY	27549	2024-02-15	2022-07-09	3.07	3.43	3.15	3.4	0.004	0.62	0.0	0.05	18.68	0.00	2.379	4.32	0.63	3.3	96.7	0.0	-1.24	0.57	0.84	2.69	3.4	0.003	0.63	0.0	0.05	17.36	0.00	2.231	2.74	2.85	4.3	95.7	0.0	-0.60	1.01	0.64	0.89	2.37	11796	1494	8	0	8	0	0	logfile
✔	8DM8	27530	2024-02-13	2022-07-08	2.68	3.21	2.72	3.1	0.006	0.89	0.0	0.06	13.50	0.01	2.306	3.39	0.72	1.8	98.2	0.0	-0.72	0.78	0.85	3.05	3.1	0.003	0.61	0.0	0.04	16.01	0.00	2.189	7.42	2.60	2.5	97.5	0.0	1.35	1.21	0.79	0.87	2.89	6479	794	4	0	3	0	0	logfile
✔	8DM9	27531	2024-02-21	2022-07-08	2.56	3.10	2.68	2.8	0.005	0.88	0.0	0.06	13.28	0.01	2.264	3.60	0.15	2.0	97.9	0.1	-0.21	0.78	0.81	2.41	2.9	0.003	0.61	0.0	0.04	14.70	0.00	2.140	9.24	1.27	2.3	97.7	0.0	0.54	2.11	0.79	0.83	2.50	30004	3689	26	0	62	0	0	logfile
✔	8DM6	27528	2024-02-13	2022-07-08	2.77	3.36	2.83	3.3	0.006	0.94	0.0	0.06	14.08	0.01	2.282	3.28	0.57	1.6	98.4	0.0	-0.08	0.77	0.83	2.73	3.2	0.004	0.65	0.0	0.04	16.20	0.00	2.208	9.52	2.15	2.1	97.9	0.0	1.45	1.59	0.76	0.83	2.84	6559	796	4	0	7	0	0	logfile
✔	8DLX	27519	2024-02-19	2022-07-08	2.45	3.38	2.62	2.7	0.005	0.83	0.0	0.06	13.11	0.01	2.279	3.50	0.08	2.2	97.8	0.0	-0.13	0.83	0.84	2.90	2.7	0.003	0.53	0.0	0.04	13.65	0.00	2.154	6.74	0.61	2.1	97.9	0.0	0.79	1.50	0.84	0.87	2.90	24293	3005	25	0	59	0	0	logfile
✔	8DM5	27527	2024-02-22	2022-07-08	2.51	3.08	2.62	2.7	0.005	0.85	0.0	0.06	13.49	0.01	2.287	3.44	0.50	1.7	98.3	0.0	0.27	0.77	0.77	2.74	2.8	0.003	0.62	0.0	0.04	15.03	0.00	2.124	9.54	1.05	2.2	97.8	0.0	0.54	0.74	0.77	0.81	2.68	35279	4328	28	0	69	0	0	logfile
✔	8DM7	27529	2024-02-22	2022-07-08	2.49	3.10	2.62	2.7	0.005	0.84	0.0	0.06	13.32	0.01	2.296	3.28	0.58	1.6	98.4	0.0	0.44	0.79	0.78	2.55	2.8	0.006	0.70	0.0	0.05	15.07	0.00	2.140	11.41	1.77	3.0	97.0	0.0	0.16	1.33	0.80	0.83	2.72	35165	4330	28	0	61	0	0	logfile
✔	8DLK	27504	2024-02-13	2022-07-08	3.04	3.80	3.14	3.5	0.005	0.86	0.0	0.06	13.42	0.01	2.319	2.66	0.29	1.9	98.1	0.0	0.00	0.82	0.85	2.78	3.5	0.003	0.60	0.0	0.04	14.88	0.00	2.242	9.14	0.71	2.9	97.1	0.0	1.88	1.16	0.82	0.86	2.61	6554	797	4	0	7	0	0	logfile
✔	8DM2	27524	2024-02-13	2022-07-08	2.91	3.71	2.85	3.6	0.007	1.02	0.0	0.07	13.37	0.01	2.362	4.12	0.44	2.5	97.5	0.0	-0.51	0.57	0.66	2.14	3.6	0.003	0.69	0.0	0.05	15.77	0.00	2.285	7.99	4.44	5.9	94.1	0.0	-0.77	1.72	0.62	0.75	3.29	2104	249	3	0	6	0	0	logfile

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