Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XCW	38257	2024-02-13	2023-12-10	2.87	3.04	1.36	3.0	0.009	1.10	0.0	0.06	16.21	0.01	2.363	4.68	3.54	2.2	97.8	0.0	1.28	0.49	0.89	4.44	3.0	0.004	0.51	0.0	0.04	16.81	0.00	2.215	6.94	2.95	2.4	97.6	0.0	2.00	0.42	0.49	0.92	3.47	3347	416	2	0	2	17	0	logfile
✔	8RED	19083	2024-02-20	2023-12-10	3.9	4.13	3.86	3.8	0.005	0.68	0.0	0.04	19.76	0.01	2.088	10.12	0.41	6.4	93.5	0.0	-0.58	0.80	0.75	1.60	3.8	0.004	0.64	0.0	0.04	19.70	0.00	1.920	11.17	3.29	6.2	93.8	0.0	0.03	1.19	0.88	0.84	1.31	28878	3617	10	105	3	0	0	logfile
✔	8XCR	38252	2024-02-13	2023-12-10	2.6	2.74	—	2.7	0.006	0.77	0.0	0.05	18.07	0.00	2.405	8.56	6.45	3.6	96.4	0.0	0.58	0.46	0.89	4.47	2.7	0.004	0.56	0.0	0.04	16.21	0.00	2.256	4.21	0.88	1.7	98.3	0.0	1.49	1.16	0.49	0.93	5.30	3360	418	2	0	2	21	0	logfile
✔	8XD4	38265	2024-02-13	2023-12-10	2.87	3.04	—	3.0	0.007	0.82	0.0	0.05	17.18	0.00	2.325	5.57	3.81	3.4	96.6	0.0	1.29	0.44	0.86	4.02	3.0	0.002	0.50	0.0	0.04	17.47	0.00	2.319	6.33	0.59	2.6	97.1	0.2	2.03	1.63	0.43	0.89	3.89	3342	418	2	0	2	11	0	logfile
✔	8XCT	38254	2024-02-13	2023-12-10	2.87	3.06	—	3.0	0.009	1.09	0.0	0.06	16.21	0.01	2.278	4.37	5.00	2.2	97.8	0.0	1.25	0.45	0.88	4.06	3.0	0.004	0.54	0.0	0.04	16.84	0.00	2.175	5.27	1.76	3.6	96.1	0.2	1.37	1.56	0.43	0.89	4.05	3358	417	2	0	1	28	0	logfile
✔	8XD3	38264	2024-02-13	2023-12-10	2.87	3.06	1.34	3.0	0.007	0.82	0.0	0.05	17.44	0.00	2.325	5.57	3.81	3.4	96.6	0.0	1.29	0.48	0.88	3.57	3.0	0.004	0.55	0.0	0.04	17.41	0.00	2.185	6.48	2.05	2.9	96.9	0.2	1.48	0.44	0.46	0.90	3.34	3342	418	2	0	2	11	0	logfile
✔	8XD5	38266	2024-02-13	2023-12-10	2.75	2.93	1.08	2.9	0.005	0.73	0.0	0.05	16.88	0.00	2.447	6.29	3.80	3.4	96.6	0.0	0.89	0.49	0.90	5.03	2.8	0.003	0.50	0.0	0.04	16.49	0.00	2.242	5.09	0.88	1.7	98.3	0.0	1.68	1.00	0.48	0.93	4.85	3378	419	2	0	2	31	0	logfile
✔	8REA	19080	2024-02-20	2023-12-10	3.4	3.79	3.47	3.4	0.003	0.60	0.0	0.04	18.95	0.01	2.108	8.71	0.23	5.6	94.4	0.0	-0.46	0.79	0.76	1.73	3.4	0.005	0.66	0.0	0.04	19.08	0.00	1.954	10.40	3.56	7.1	92.8	0.0	-0.13	2.03	0.88	0.87	1.64	28821	3668	10	100	3	0	0	logfile
✔	8REE	19084	2024-02-20	2023-12-10	3.8	4.28	4.01	4.1	0.003	0.64	0.0	0.04	19.58	0.01	1.936	11.03	0.38	5.7	94.3	0.1	-0.72	0.61	0.35	-0.14	3.9	0.004	0.80	0.0	0.04	19.80	0.00	1.996	17.32	3.25	7.3	92.6	0.1	-1.09	1.48	0.88	0.83	0.99	28605	3617	10	103	3	0	0	logfile
✔	8REB	19081	2024-02-20	2023-12-10	3.4	3.95	3.51	4.1	0.005	0.71	0.0	0.04	19.20	0.01	2.006	10.84	0.38	6.7	93.3	0.0	-0.58	0.63	0.34	0.40	3.5	0.004	0.80	0.0	0.04	19.54	0.00	1.958	18.09	1.92	6.2	93.8	0.0	-0.55	5.23	0.88	0.83	1.09	28681	3638	10	101	3	0	0	logfile
✔	8XCU	38255	2024-02-13	2023-12-10	2.83	3.05	1.05	3.0	0.009	1.11	0.0	0.06	16.31	0.01	2.476	4.65	5.00	2.2	97.8	0.0	1.25	0.45	0.87	4.12	3.0	0.003	0.54	0.0	0.04	16.45	0.00	2.242	7.50	0.29	3.9	95.9	0.2	1.64	0.62	0.46	0.91	4.05	3370	417	2	0	3	20	0	logfile
✔	8XCX	38258	2024-02-13	2023-12-10	2.83	3.04	1.04	3.0	0.008	0.84	0.0	0.05	16.53	0.01	2.405	6.53	2.96	2.9	97.1	0.0	1.08	0.44	0.88	4.21	3.0	0.003	0.49	0.0	0.04	16.75	0.00	2.260	6.37	1.18	2.7	97.3	0.0	1.68	1.13	0.41	0.89	3.60	3329	416	2	0	2	25	0	logfile
✔	8XCZ	38260	2024-02-13	2023-12-10	2.83	3.03	1.04	3.0	0.007	0.74	0.0	0.05	17.16	0.01	2.428	5.92	3.85	3.6	96.4	0.0	1.41	0.43	0.88	4.78	3.0	0.004	0.51	0.0	0.04	17.29	0.00	2.214	5.16	1.78	2.7	97.3	0.0	1.62	0.35	0.43	0.91	3.87	3324	416	2	0	2	17	0	logfile
✔	8XD2	38263	2024-02-13	2023-12-10	2.64	3.04	—	3.0	0.009	0.88	0.0	0.05	17.62	0.00	2.449	4.72	3.56	3.9	96.1	0.0	0.83	0.45	0.88	4.08	3.0	0.004	0.57	0.0	0.04	17.04	0.00	2.273	5.33	0.89	2.7	97.3	0.0	1.85	0.55	0.43	0.89	3.77	3305	416	2	0	2	9	0	logfile
✔	8RE4	19079	2024-02-21	2023-12-10	2.8	3.82	2.89	3.0	0.006	0.84	0.0	0.06	18.84	0.01	1.931	14.53	1.66	6.1	93.7	0.2	-0.49	0.86	0.81	2.10	3.1	0.004	0.65	0.0	0.04	18.91	0.00	1.969	8.69	2.55	6.3	93.7	0.0	0.21	2.26	0.92	0.88	2.17	29165	3667	10	102	3	0	0	logfile
✔	8XD0	38261	2024-02-13	2023-12-10	2.83	3.06	1.35	3.0	0.009	1.13	0.0	0.07	16.46	0.01	2.449	4.66	2.35	3.1	96.9	0.0	1.32	0.46	0.88	3.52	3.0	0.004	0.54	0.0	0.04	17.71	0.00	2.198	5.71	2.35	2.9	96.9	0.2	1.84	0.36	0.46	0.91	3.35	3357	417	2	0	2	14	0	logfile
✔	8XBH	38218	2024-02-14	2023-12-06	2.83	2.95	2.88	3.0	0.004	0.70	0.0	0.04	13.23	0.00	2.151	10.57	0.00	3.8	96.1	0.1	0.30	0.49	0.70	2.33	3.1	0.003	0.68	0.0	0.04	16.57	0.00	2.174	11.87	2.36	3.7	96.2	0.1	0.38	0.51	0.52	0.74	1.75	8947	1137	6	0	1	0	0	logfile
✔	8RC4	19047	2024-02-19	2023-12-06	3.1	4.01	2.99	7.5	0.005	0.80	0.0	0.05	15.58	0.01	2.017	2.88	0.10	3.9	96.0	0.0	0.73	0.69	0.31	-0.03	2.5	0.004	0.80	0.0	0.05	16.44	0.00	1.436	21.80	1.52	4.4	95.6	0.0	-0.06	1.35	0.82	0.64	0.61	78273	11105	18	0	4	0	0	logfile
✔	8XBi	38219	2024-02-13	2023-12-06	3.06	2.87	3.01	3.0	0.013	1.26	0.0	0.07	13.63	0.01	2.221	7.35	0.00	1.7	98.3	0.0	1.92	0.37	0.67	0.71	3.0	0.002	0.51	0.0	0.04	16.58	0.00	2.210	9.13	2.18	2.0	98.0	0.0	2.23	0.43	0.48	0.72	0.93	2467	298	2	0	1	0	0	logfile
✔	8V8B	43033	2024-02-25	2023-12-05	2.4	2.48	2.49	2.5	0.005	0.87	0.0	0.06	13.66	0.01	2.320	1.00	0.23	2.7	97.3	0.0	-0.78	0.77	0.85	4.46	2.5	0.003	0.71	2.0	0.04	15.79	0.00	1.849	2.85	1.42	1.6	98.4	0.0	1.49	1.63	0.75	0.85	3.19	50700	6188	13	0	0	0	0	logfile

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