Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8V8B	43033	2024-02-25	2023-12-05	2.4	2.48	2.49	2.5	0.005	0.87	0.0	0.06	13.66	0.01	2.320	1.00	0.23	2.7	97.3	0.0	-0.78	0.77	0.85	4.46	2.5	0.003	0.71	2.0	0.04	15.79	0.00	1.849	2.85	1.42	1.6	98.4	0.0	1.49	1.63	0.75	0.85	3.19	50700	6188	13	0	0	0	0	logfile
✔	8RBX	19038	2024-02-18	2023-12-05	4.1	4.04	3.99	7.7	0.007	0.91	2.0	0.07	18.74	0.01	2.138	5.09	0.56	4.8	95.2	0.0	-0.02	0.71	0.32	—	3.0	0.010	1.06	1.0	0.05	16.40	0.01	1.822	33.06	0.00	6.7	93.1	0.2	-0.59	1.81	0.77	0.55	—	129226	16906	56	326	76	0	0	logfile
✔	8R8D	18999	2024-02-13	2023-11-29	2.6	2.88	2.59	2.9	0.003	0.67	0.0	0.05	14.75	0.01	2.232	7.33	0.00	4.3	95.7	0.0	0.10	0.70	0.81	2.80	2.9	0.005	0.73	0.0	0.05	15.12	0.01	2.151	9.07	3.03	5.1	94.9	0.0	0.15	0.31	0.68	0.82	3.22	7062	920	14	0	12	18	0	logfile
✔	8X82	38133	2024-02-15	2023-11-27	2.8	2.70	2.78	2.9	0.002	0.41	0.0	0.03	16.43	0.00	2.181	5.24	0.84	0.8	99.2	0.0	3.68	0.57	0.78	2.85	2.9	0.002	0.40	0.0	0.03	16.97	0.00	2.209	5.36	1.45	1.3	98.7	0.0	3.58	0.37	0.62	0.82	2.78	12004	1520	4	0	0	0	0	logfile
✔	8X83	38134	2024-02-19	2023-11-27	2.8	2.86	2.94	3.0	0.005	0.60	0.0	0.03	14.83	0.00	1.974	4.85	1.22	1.3	98.7	0.0	2.34	0.59	0.79	2.50	3.0	0.003	0.43	0.0	0.03	15.41	0.00	2.033	5.26	0.99	0.9	99.1	0.0	3.42	0.50	0.58	0.79	2.76	24482	1520	12	0	6	4	12424	logfile
✔	8X84	38135	2024-02-19	2023-11-27	3.1	2.99	3.18	3.2	0.004	0.53	0.0	0.03	14.45	0.00	1.976	4.19	0.30	0.8	99.2	0.0	3.21	0.57	0.78	3.16	3.2	0.002	0.41	0.0	0.03	15.07	0.00	2.042	3.38	0.38	0.3	99.7	0.0	3.56	0.49	0.60	0.80	2.63	24534	1524	12	0	6	4	12444	logfile
✔	8X7U	38111	2024-02-20	2023-11-25	3.57	3.00	—	3.5	0.003	0.66	0.0	0.04	11.87	0.00	2.050	11.43	0.31	2.5	97.4	0.1	-3.75	0.80	0.74	1.42	3.5	0.003	0.59	0.0	0.04	14.39	0.00	1.968	10.88	2.23	3.1	96.8	0.1	-0.62	1.16	0.81	0.75	1.61	28832	3840	11	0	8	0	0	logfile
✔	8X7T	38109	2024-02-20	2023-11-25	3.26	2.44	—	3.2	0.002	0.63	0.0	0.04	10.71	0.00	2.206	16.31	0.38	3.2	96.7	0.1	-3.29	0.78	0.69	1.97	3.2	0.003	0.58	0.0	0.04	14.23	0.00	2.175	11.18	1.60	2.9	97.0	0.1	-0.29	0.64	0.82	0.75	1.85	28329	3753	6	0	0	0	0	logfile
✔	8R6F	18951	2024-02-25	2023-11-22	2.34	2.53	2.46	2.5	0.009	1.00	0.0	0.04	22.48	0.02	1.805	11.86	0.95	2.7	97.3	0.0	0.10	0.79	0.82	3.93	2.5	0.006	0.87	0.0	0.04	22.55	0.01	1.681	10.28	3.29	2.8	97.2	0.0	0.32	0.37	0.80	0.86	3.92	49016	2833	39	1177	48	1067	0	logfile
✔	8X63	38078	2024-02-13	2023-11-20	3.2	4.09	3.72	4.5	0.005	0.74	1.0	0.05	15.26	0.01	2.411	9.43	0.81	8.0	92.0	0.0	-0.11	0.13	0.13	0.69	4.1	0.004	0.74	0.0	0.04	17.26	0.01	2.293	9.87	2.85	7.6	92.4	0.0	-0.32	1.25	0.29	0.45	0.26	2252	270	2	0	1	0	0	logfile
✔	8X5Y	38075	2024-02-13	2023-11-20	3.0	3.88	3.52	3.9	0.013	0.90	0.0	0.05	14.80	0.01	2.346	8.21	0.40	7.5	92.5	0.0	-0.78	0.38	0.58	2.00	3.9	0.005	0.79	0.0	0.04	17.13	0.00	2.177	9.94	2.81	7.8	92.2	0.0	-0.11	0.31	0.32	0.53	1.42	2292	274	2	0	1	0	0	logfile
✔	8X64	38079	2024-02-13	2023-11-20	3.4	4.16	3.79	4.1	0.005	0.90	1.0	0.05	17.36	0.01	2.290	13.75	0.42	7.5	92.5	0.0	-0.76	0.45	0.61	2.20	4.1	0.005	0.84	0.0	0.04	18.19	0.01	2.112	13.30	5.44	8.6	91.4	0.0	-1.11	1.15	0.41	0.61	1.33	2189	263	2	0	1	0	0	logfile
✔	8X5X	38074	2024-02-13	2023-11-20	3.5	3.67	4.06	3.8	0.004	0.77	0.0	0.04	14.15	0.00	2.094	14.97	0.43	5.3	94.7	0.0	1.03	0.42	0.53	1.42	3.8	0.003	0.76	0.0	0.04	17.57	0.00	2.257	12.40	4.31	4.9	95.1	0.0	1.16	0.80	0.44	0.57	0.33	2105	256	1	0	0	0	0	logfile
✔	8R55	18901	2024-02-24	2023-11-16	3.57	3.93	3.88	3.8	0.006	1.01	9.0	0.05	24.53	0.01	1.933	10.81	1.40	6.9	92.9	0.2	-2.49	0.70	0.81	0.58	3.7	0.004	0.70	0.0	0.04	24.15	0.00	2.025	18.42	7.99	8.3	91.6	0.1	-2.00	0.52	0.72	0.83	0.57	143867	5438	53	4715	0	0	0	logfile
✔	8R57	18903	2024-02-19	2023-11-16	2.55	2.73	2.64	2.7	0.009	0.99	0.0	0.05	21.81	0.03	1.799	17.27	1.11	7.2	92.8	0.0	-1.66	0.79	0.81	2.29	2.7	0.003	0.78	0.0	0.04	21.70	0.01	1.858	12.63	2.59	5.1	94.9	0.0	-0.44	2.62	0.82	0.84	2.40	25048	1878	29	458	28	357	0	logfile
✔	8X43	38041	2024-02-21	2023-11-15	3.0	3.27	3.12	3.3	0.005	0.92	0.0	0.03	17.02	0.00	1.965	12.43	0.38	3.8	96.2	0.0	2.23	0.54	0.70	2.13	3.3	0.004	0.65	0.0	0.03	17.72	0.00	2.045	9.91	2.71	3.4	96.6	0.0	2.67	0.80	0.60	0.76	2.07	30164	1880	12	0	4	0	14984	logfile
✔	8UZ0	42829	2024-02-25	2023-11-14	2.8	3.08	2.94	3.1	0.012	1.89	40.0	0.11	15.93	0.02	1.973	0.23	3.11	3.7	96.2	0.1	-1.29	0.69	0.81	4.01	3.1	0.003	0.63	0.0	0.04	16.78	0.00	1.907	5.03	1.88	3.1	96.9	0.0	0.63	1.55	0.63	0.80	3.17	52290	3348	18	0	18	0	25857	logfile
✔	8UZ1	42830	2024-02-25	2023-11-14	3.6	3.84	3.63	3.9	0.012	1.91	30.0	0.11	15.16	0.01	1.829	0.04	1.34	4.9	94.9	0.2	-1.77	0.76	0.83	3.08	3.9	0.003	0.62	0.0	0.04	15.51	0.00	0.770	6.48	1.52	3.9	96.1	0.0	-0.24	1.52	0.70	0.81	2.01	52329	3348	18	0	27	0	25860	logfile
✔	8UYH	42806	2024-02-13	2023-11-13	2.84	2.98	2.94	3.1	0.006	0.76	0.0	0.04	13.96	0.01	2.074	3.66	1.52	1.1	98.9	0.0	-1.53	0.55	0.80	3.13	3.1	0.002	0.48	0.0	0.04	15.22	0.00	1.967	6.65	2.27	2.0	98.0	0.0	1.54	0.54	0.60	0.83	2.80	6036	745	4	0	5	0	0	logfile
✔	8UYi	42807	2024-02-13	2023-11-13	3.13	3.34	3.23	3.4	0.004	0.67	0.0	0.04	12.68	0.00	2.057	4.03	1.08	2.1	97.9	0.0	-0.84	0.52	0.74	3.12	3.4	0.003	0.61	0.0	0.04	15.34	0.00	1.939	9.32	3.85	2.7	97.3	0.0	1.25	1.90	0.66	0.82	2.58	5980	738	4	0	6	0	0	logfile

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